genome.fa.s24.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  136  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42279004--42279054	25	2.0	25	84	0	66	60	1	7	29	1.36
42279086--42279131	24	2.0	23	86	4	65	28	4	6	60	1.40
42280339--42280394	16	3.3	17	82	5	69	35	1	0	62	1.06
42280344--42280392	25	1.9	26	88	12	75	38	2	0	59	1.09
42285213--42285258	23	2.0	23	100	0	92	56	13	8	21	1.63
42288585--42288664	32	2.5	32	95	2	144	41	28	2	27	1.69
42291379--42291408	15	2.0	15	93	0	51	13	36	0	50	1.42
42295112--42295197	27	3.2	27	85	3	111	22	18	18	40	1.91
42295439--42295526	44	2.0	44	93	0	149	34	39	6	19	1.78
42298157--42298297	56	2.7	53	90	6	207	21	29	21	26	1.99
42301647--42301673	8	3.4	8	100	0	54	59	0	11	29	1.32
42304147--42304196	3	16.7	3	87	0	73	32	34	0	34	1.58
42305399--42305441	14	3.0	14	93	3	68	65	25	2	6	1.30
42306489--42306554	30	2.2	30	83	2	89	50	1	1	46	1.20
42306787--42306850	32	2.0	32	87	0	92	12	9	9	68	1.39
42306794--42306861	32	2.1	32	83	0	82	17	7	5	69	1.33
42306794--42306870	11	7.2	11	76	4	50	16	6	7	68	1.35
42306812--42306870	21	2.8	21	73	2	55	18	8	6	66	1.41
42307014--42307052	14	2.9	14	82	17	55	71	0	0	28	0.86
42309378--42309540	84	1.9	84	83	9	208	41	13	25	19	1.88
42315568--42315605	19	2.0	19	89	0	58	50	7	2	39	1.46
42325194--42325244	6	8.3	6	75	12	50	78	0	5	15	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42326343--42326394	25	2.1	25	89	7	79	5	3	42	48	1.45
42326448--42326490	21	2.0	21	86	4	59	16	2	9	72	1.21
42326724--42326955	98	2.4	98	86	0	302	28	20	21	28	1.98
42326809--42327180	143	2.6	143	92	0	609	26	22	22	28	1.99
42335855--42336483	322	2.0	321	90	2	1003	37	17	18	26	1.93
42341885--42341928	21	2.1	21	100	0	88	40	18	9	31	1.81
42345465--42345489	9	2.8	9	100	0	50	0	8	44	48	1.32
42348219--42348481	39	6.7	40	87	7	328	24	27	22	25	2.00
42353865--42354127	39	6.6	39	85	6	302	25	27	22	25	2.00
42359224--42359267	22	2.0	22	90	0	70	34	2	36	27	1.70
42361564--42361596	11	3.1	11	91	4	50	72	6	6	15	1.24
42361578--42361609	12	2.8	12	90	9	50	75	0	0	25	0.81
42365886--42365927	10	4.0	11	78	12	52	73	7	7	11	1.23
42365889--42365926	20	1.9	20	94	0	67	78	5	5	10	1.06
42373418--42373490	31	2.6	28	78	16	78	9	13	6	69	1.34
42373471--42373539	12	5.5	12	76	18	61	15	7	2	73	1.17
42377442--42377512	30	2.6	26	77	16	79	9	14	7	69	1.37
42377494--42377555	13	4.5	13	77	15	61	16	6	3	74	1.16
42379980--42380026	12	3.8	13	88	8	71	78	2	4	14	0.99
42387412--42387550	68	2.0	68	98	0	269	33	9	17	39	1.82
42389569--42389643	33	2.2	34	90	2	116	42	12	6	38	1.68
42390866--42390904	18	2.2	17	82	13	51	5	17	2	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42393689--42393797	54	2.0	54	98	0	209	32	10	27	30	1.89
42398904--42398928	12	2.1	12	100	0	50	32	16	8	44	1.76
42405280--42405328	10	4.9	10	78	9	55	26	16	30	26	1.97
42405282--42405328	20	2.3	20	89	7	69	25	17	31	25	1.97
42407546--42407589	22	2.0	22	95	0	79	25	36	4	34	1.76
42408601--42408630	11	2.7	11	100	0	60	56	16	0	26	1.40
42412552--42412614	23	2.7	23	85	0	81	38	26	6	28	1.81
42415106--42415181	19	3.8	18	80	16	64	75	2	14	7	1.14
42415126--42415181	19	2.8	20	83	8	69	76	1	12	8	1.08
42419321--42419383	23	2.7	23	80	9	74	38	26	4	30	1.77
42423104--42423139	17	2.1	18	89	5	56	8	22	5	63	1.43
42428997--42429071	33	2.2	34	90	2	116	42	12	6	38	1.68
42429694--42429724	12	2.6	12	94	0	53	80	3	6	9	0.99
42429688--42429726	11	3.5	11	82	6	51	71	5	5	17	1.23
42437602--42437641	18	2.2	18	86	4	53	12	27	0	60	1.33
42438698--42438735	14	2.7	14	95	0	67	15	13	5	65	1.43
42438778--42438810	13	2.6	13	90	4	50	18	3	3	75	1.06
42442359--42442536	27	6.6	27	83	3	205	26	15	28	29	1.96
42442360--42442515	82	1.9	81	88	3	233	26	15	28	29	1.96
42442356--42442536	82	2.2	81	83	2	229	27	15	27	29	1.96
42442441--42442547	27	3.9	27	85	1	70	26	14	28	30	1.95
42445451--42445498	18	2.6	18	78	15	53	6	16	4	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446422--42446457	14	2.6	14	100	0	72	13	13	5	66	1.41
42446498--42446533	12	2.9	12	87	4	54	22	2	8	66	1.31
42450362--42450400	18	2.2	18	86	9	53	5	20	2	71	1.17
42457691--42457736	20	2.3	20	84	0	56	23	19	17	39	1.92
42457683--42457756	30	2.5	30	84	8	80	22	20	18	37	1.94
42459377--42459411	13	2.7	13	90	0	52	82	2	5	8	0.91
42460495--42460547	18	3.0	18	78	13	65	69	5	18	5	1.28
42460553--42460613	12	4.9	12	73	13	52	63	1	21	13	1.37
42460592--42460654	33	1.9	33	84	12	85	53	6	26	12	1.62
42462485--42462545	30	2.0	30	100	0	122	22	19	19	37	1.94
42482974--42483193	109	2.0	109	97	0	413	28	20	11	40	1.87
42492038--42492099	32	2.0	32	84	12	85	16	12	9	61	1.56
42495053--42495227	27	6.4	27	84	3	208	27	14	27	30	1.95
42495054--42495209	82	1.9	81	89	3	242	26	14	28	30	1.95
42495050--42495227	82	2.2	81	83	3	232	27	14	26	30	1.95
42503130--42503307	27	6.6	27	85	3	214	26	14	28	30	1.95
42503131--42503286	82	1.9	81	89	3	242	26	14	28	30	1.95
42503127--42503307	82	2.2	81	84	2	238	27	14	27	30	1.95
42518245--42518307	21	3.0	21	90	2	90	31	34	4	28	1.78
42526674--42526703	11	2.7	11	100	0	60	76	6	6	10	1.15
42537222--42537481	79	3.3	79	80	6	244	25	21	26	26	1.99
42537222--42537446	40	5.7	40	83	5	269	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42545029--42545286	79	3.3	79	84	5	256	25	20	27	25	1.99
42545029--42545253	40	5.7	40	84	5	278	24	21	27	26	1.99
42547965--42548043	37	2.1	37	88	0	113	26	30	18	24	1.98
42548162--42548681	47	11.1	47	95	0	844	28	30	9	32	1.88
42561332--42561396	22	2.9	22	90	2	94	33	33	4	27	1.78
42562401--42562438	20	2.0	20	94	5	69	23	28	15	31	1.96
42566059--42566098	11	3.7	11	96	3	73	70	7	0	22	1.12
42569222--42569444	79	2.8	81	82	9	264	25	21	27	25	1.99
42569222--42569444	39	5.7	40	85	6	253	25	21	27	25	1.99
42569222--42569477	79	3.3	79	80	10	199	26	21	27	25	1.99
42571371--42571413	14	3.0	14	89	3	59	79	0	18	2	0.85
42571375--42571425	15	3.5	14	84	7	57	78	0	19	1	0.85
42574030--42574072	11	4.0	11	77	17	54	74	6	0	18	1.04
42574034--42574075	21	2.0	21	95	0	75	78	4	0	16	0.91
42574116--42574170	16	3.5	15	88	9	83	63	5	12	18	1.47
42586962--42587068	56	1.9	56	86	3	153	25	20	13	41	1.88
42587692--42587746	20	2.8	20	94	0	92	27	16	29	27	1.97
42589660--42589687	13	2.2	13	100	0	56	14	21	21	42	1.88
42590208--42590237	16	1.9	15	93	6	51	43	33	3	20	1.68
42591536--42591598	21	3.0	21	88	2	90	30	3	33	33	1.74
42592677--42592718	10	4.3	10	78	6	50	28	11	23	35	1.91
42598491--42598535	19	2.4	18	85	3	54	20	8	2	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42598621--42598645	9	2.8	9	100	0	50	8	0	0	92	0.40
42613078--42613238	81	2.0	80	86	3	223	26	25	14	33	1.95
42617472--42617539	29	2.3	29	82	5	84	27	29	13	29	1.94
42617646--42617713	29	2.3	29	82	5	84	27	29	13	29	1.94
42617822--42617890	29	2.4	28	85	9	86	30	27	13	28	1.94
42617361--42617862	174	2.9	174	98	0	959	31	24	14	30	1.94
42626722--42626768	20	2.3	20	81	0	58	29	34	12	23	1.92
42632352--42632404	23	2.4	22	76	20	56	9	18	1	69	1.25
42636127--42636179	23	2.4	22	76	20	56	9	18	1	69	1.25
42649354--42649407	23	2.2	25	78	15	60	62	3	22	11	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240