genome.fa.s24.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  168  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52274028--52274064	19	1.9	19	89	10	58	0	13	2	83	0.74
52279286--52279333	18	2.6	18	86	3	60	33	4	8	54	1.50
52279300--52279338	18	2.2	18	95	0	69	28	2	10	58	1.44
52280803--52280850	17	2.7	18	83	9	62	64	2	6	27	1.28
52283314--52283492	50	3.6	50	77	6	168	28	21	26	23	1.99
52286118--52286147	16	1.9	16	93	6	53	46	0	13	40	1.43
52286310--52286376	28	2.4	29	85	5	84	23	14	13	47	1.80
52286593--52286870	123	2.2	125	96	2	508	29	15	21	34	1.93
52287109--52287145	16	2.3	16	100	0	74	45	13	18	21	1.84
52290023--52290193	29	5.9	29	95	3	308	28	0	26	45	1.54
52290023--52290193	59	2.9	59	97	1	319	28	0	26	45	1.54
52292507--52292550	22	2.2	20	88	12	63	63	0	0	36	0.95
52292500--52292564	32	2.1	30	91	5	103	61	0	0	38	0.96
52292599--52292670	22	3.3	22	96	3	128	36	0	34	29	1.58
52296459--52296526	25	2.8	24	76	10	57	45	1	5	47	1.36
52299159--52299281	64	1.9	64	80	3	140	24	19	20	35	1.95
52301004--52301047	23	1.9	23	85	0	61	43	6	11	38	1.67
52305042--52305098	28	2.0	28	93	0	96	24	12	17	45	1.83
52305870--52305895	13	2.0	13	100	0	52	30	23	0	46	1.53
52307618--52307686	35	1.9	36	91	2	113	26	4	18	50	1.65
52309003--52309069	34	1.9	35	90	3	109	46	13	8	31	1.74
52310388--52310425	3	12.7	3	94	0	67	31	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52314937--52314990	27	2.1	27	82	6	67	11	31	1	55	1.45
52318705--52319177	47	9.9	47	93	2	775	32	8	29	29	1.87
52318705--52319177	96	5.0	96	93	2	778	32	8	29	29	1.87
52318705--52319175	143	3.3	143	93	2	797	32	8	29	29	1.87
52319299--52319371	37	2.0	37	83	5	94	24	19	27	28	1.98
52321281--52321354	29	2.6	29	89	4	105	25	16	32	25	1.96
52321669--52321891	40	5.6	40	90	2	322	25	21	26	26	1.99
52325600--52325976	47	7.9	47	91	1	583	32	8	29	29	1.87
52325600--52325976	143	2.7	143	94	0	641	32	8	29	29	1.87
52326095--52326173	37	2.1	37	88	4	115	25	18	30	25	1.98
52327601--52327639	13	2.9	14	96	3	71	23	15	0	61	1.33
52327678--52327721	12	3.6	12	78	6	52	13	9	9	68	1.40
52327906--52327939	16	2.1	16	88	0	50	73	5	8	11	1.24
52333800--52333866	34	1.9	35	87	3	100	31	8	14	44	1.76
52336381--52336429	25	2.1	24	88	11	75	36	12	24	26	1.91
52337071--52337132	30	2.1	30	90	0	97	25	4	12	56	1.56
52347738--52347786	20	2.5	20	86	6	64	61	2	4	32	1.26
52349006--52349174	63	2.7	62	80	5	196	25	26	20	28	1.99
52350163--52350220	10	6.1	9	80	11	71	60	0	0	39	0.97
52350161--52350215	19	2.9	18	81	7	65	60	0	0	40	0.97
52350165--52350222	29	2.0	29	87	9	84	60	0	0	39	0.97
52351943--52351981	20	1.9	20	84	5	51	48	2	5	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52355927--52355952	13	2.0	13	100	0	52	38	15	7	38	1.76
52364588--52364613	13	2.0	13	100	0	52	38	15	7	38	1.76
52366355--52366392	15	2.4	16	82	8	51	23	31	0	44	1.54
52367791--52367821	16	1.9	16	93	0	53	67	3	0	29	1.06
52369124--52369158	18	1.9	18	88	0	52	62	0	0	37	0.95
52369108--52369158	10	5.3	10	77	13	54	60	0	1	37	1.08
52369425--52369486	9	6.6	9	73	15	54	27	3	1	67	1.15
52369426--52369514	10	9.2	10	74	12	71	29	3	1	66	1.15
52369426--52369507	19	4.2	19	75	14	69	28	3	1	67	1.15
52369582--52369789	93	2.3	89	78	11	237	33	10	18	37	1.85
52369878--52369938	10	6.2	10	74	11	54	22	11	3	62	1.43
52369883--52369941	29	2.0	29	100	0	118	23	10	3	62	1.42
52378314--52378426	44	2.7	41	72	14	95	30	23	16	30	1.96
52378403--52378661	44	5.7	44	73	13	218	28	21	18	31	1.97
52378347--52378629	142	2.0	142	94	0	494	27	20	18	33	1.96
52396938--52396967	7	4.4	7	91	8	53	26	0	0	73	0.84
52396992--52397050	32	1.9	31	86	13	86	42	11	1	44	1.51
52397139--52397173	17	2.1	17	88	0	52	37	8	0	54	1.31
52398344--52398369	13	2.0	13	100	0	52	30	7	7	53	1.57
52399160--52399184	8	3.1	8	100	0	50	64	0	0	36	0.94
52401273--52401298	9	2.9	9	100	0	52	53	0	23	23	1.46
52403881--52403906	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52429093--52429537	220	2.0	219	88	2	651	30	12	19	37	1.88
52437414--52437446	13	2.4	14	90	5	50	33	3	18	45	1.65
52439424--52439486	24	2.9	21	71	15	56	58	11	0	30	1.32
52439673--52439719	3	15.7	3	82	8	60	65	2	2	29	1.15
52440838--52441109	44	6.2	44	88	4	329	25	26	19	28	1.98
52440838--52441109	88	3.1	88	86	5	372	25	26	19	28	1.98
52440838--52441107	132	2.0	132	86	5	377	25	26	18	28	1.98
52440867--52441126	44	5.9	44	90	2	362	25	26	19	28	1.99
52441177--52441278	44	2.3	44	78	6	118	25	23	17	33	1.96
52441211--52441404	88	2.2	88	79	2	192	24	24	22	28	1.99
52447745--52447821	31	2.5	31	80	0	91	36	5	22	36	1.76
52449486--52449539	25	2.2	25	100	0	108	35	18	16	29	1.93
52450661--52450762	46	2.2	45	84	1	123	48	17	6	27	1.73
52453768--52454103	84	4.0	84	93	0	564	16	19	27	35	1.94
52454133--52454300	84	2.0	84	96	0	309	16	19	29	35	1.94
52453936--52454798	198	4.4	198	93	1	1410	20	18	26	33	1.96
52454329--52454496	84	2.0	84	92	0	282	17	18	28	35	1.93
52454527--52454694	84	2.0	84	95	0	300	16	20	28	34	1.94
52454611--52454967	104	3.2	113	83	9	443	24	17	26	31	1.97
52455560--52456480	391	2.4	385	90	4	1453	30	4	22	42	1.74
52460565--52460635	21	3.4	21	82	7	90	32	16	46	4	1.67
52462087--52462120	2	17.0	2	100	0	68	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52465027--52465076	17	2.9	17	77	11	57	54	6	4	36	1.44
52465300--52465346	22	2.1	22	92	7	78	25	10	8	55	1.62
52469062--52469113	27	1.9	27	84	7	70	38	15	21	25	1.92
52473467--52473601	68	2.0	68	86	7	193	48	5	3	42	1.43
52475222--52475252	16	1.9	16	93	0	53	70	9	9	9	1.33
52486186--52486281	48	2.0	48	100	0	192	20	16	25	37	1.93
52487243--52487326	19	4.3	18	75	18	69	52	5	0	41	1.26
52487388--52487464	35	2.2	35	95	2	136	45	6	5	42	1.52
52487687--52487938	125	2.0	123	88	3	371	29	15	13	41	1.85
52491873--52491923	24	2.2	24	89	3	77	58	7	3	29	1.44
52492713--52492764	27	1.9	27	84	7	70	26	1	3	67	1.18
52493157--52493212	23	2.4	23	100	0	112	32	14	10	42	1.80
52497634--52497701	3	22.3	3	73	8	57	61	5	1	30	1.28
52498280--52498318	16	2.4	16	87	8	53	15	2	2	79	0.95
52499532--52499682	71	2.1	73	86	7	211	37	22	16	23	1.93
52499558--52499783	119	1.9	122	89	4	359	35	22	16	25	1.94
52499748--52500025	143	1.9	144	80	5	321	33	21	15	29	1.95
52499892--52500123	88	2.6	87	83	2	284	35	22	15	26	1.94
52500032--52500177	74	2.0	74	91	0	238	31	20	19	28	1.97
52500068--52500305	122	1.9	125	85	4	329	34	21	15	28	1.93
52500195--52500367	68	2.5	70	85	4	210	32	21	14	30	1.93
52501210--52501251	12	3.5	12	90	0	66	0	11	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52512303--52512355	24	2.2	24	78	21	58	56	7	11	24	1.60
52512735--52512817	27	3.2	26	76	23	77	51	6	6	36	1.51
52512946--52513006	22	2.8	22	87	7	81	57	8	1	32	1.38
52512949--52513017	3	23.3	3	74	14	63	60	5	1	31	1.29
52513595--52513630	16	2.3	16	90	4	56	13	2	2	80	0.93
52514623--52514658	18	2.1	17	89	5	54	55	0	2	41	1.14
52514739--52514784	23	2.1	22	84	11	60	41	0	0	58	0.98
52528781--52528814	15	2.3	15	90	5	52	29	5	0	64	1.17
52528823--52528863	3	13.7	3	100	0	82	34	0	0	65	0.93
52529631--52529664	8	4.5	8	96	3	54	64	5	0	29	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240