genome.fa.s24.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  172  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53466282--53466464	40	4.6	40	78	9	194	25	25	24	24	2.00
53480166--53480466	39	7.8	40	85	6	388	25	28	20	24	1.99
53480170--53480466	113	2.6	116	85	4	386	26	28	20	24	1.99
53481726--53481864	37	3.8	37	96	0	233	25	30	19	24	1.98
53481981--53482529	47	11.6	47	89	3	807	29	28	8	33	1.86
53482509--53482552	23	1.9	23	100	0	88	38	18	0	43	1.50
53482460--53482601	72	2.0	72	98	0	275	33	24	5	36	1.79
53482320--53482748	214	2.0	218	97	2	812	31	27	6	34	1.84
53482511--53482560	23	2.2	23	89	7	75	38	20	0	42	1.52
53482414--53482648	121	2.0	118	91	2	380	31	27	6	34	1.83
53482532--53482798	49	5.5	49	91	4	434	31	28	6	33	1.83
53482224--53482798	310	1.8	313	93	3	1007	30	28	7	33	1.84
53482530--53482798	147	1.8	147	95	0	493	31	27	6	33	1.83
53486355--53486819	235	2.0	233	92	1	770	38	17	15	29	1.90
53488123--53488289	42	3.9	42	74	4	120	35	20	17	26	1.95
53491931--53492011	42	1.9	43	89	2	128	34	27	17	20	1.95
53491930--53492022	42	2.2	43	84	1	125	33	27	16	22	1.95
53493334--53493431	24	4.0	24	88	4	135	35	5	37	21	1.76
53495958--53496008	22	2.3	22	96	0	93	41	7	17	33	1.79
53497675--53497721	24	1.9	25	82	4	60	36	2	31	29	1.70
53501095--53501192	24	4.0	24	89	1	142	35	5	38	20	1.75
53502889--53503151	40	6.6	40	87	3	307	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53502925--53503186	80	3.3	80	84	3	253	25	20	27	27	1.99
53510871--53511077	40	5.2	40	92	0	308	24	20	28	27	1.99
53510871--53511112	80	3.0	80	85	2	247	25	20	28	26	1.99
53517319--53517362	23	1.9	23	86	9	63	13	20	0	65	1.26
53521396--53521576	45	4.2	44	80	13	198	27	27	18	27	1.98
53521418--53521576	45	3.6	45	85	5	220	28	27	18	25	1.98
53523922--53524028	49	2.3	47	82	7	130	46	8	17	27	1.77
53526921--53526954	16	2.1	16	88	0	50	76	0	0	23	0.79
53533546--53533596	25	2.0	26	92	3	86	35	21	3	39	1.72
53536078--53536129	24	2.2	24	96	0	95	32	9	13	44	1.76
53538507--53538561	17	3.1	18	86	7	67	38	0	0	61	0.96
53538482--53538561	9	8.8	9	78	13	65	40	1	0	58	1.06
53538530--53538561	10	3.3	10	91	8	57	37	0	0	62	0.95
53538522--53538561	19	2.1	19	95	0	71	37	0	0	62	0.95
53541702--53542057	27	13.3	26	84	6	365	41	20	16	21	1.90
53541725--53542030	81	3.8	81	87	4	417	42	19	16	20	1.90
53542263--53542339	26	3.0	26	82	3	93	16	22	25	35	1.95
53542445--53542567	28	4.4	28	78	5	133	22	20	22	34	1.97
53545864--53546131	40	6.7	40	95	0	473	30	20	26	21	1.98
53552983--53553011	3	9.7	3	100	0	58	31	0	0	68	0.89
53553135--53553168	16	2.1	16	94	0	59	44	11	2	41	1.56
53553283--53553354	24	3.1	23	78	7	74	36	6	2	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53557594--53557633	14	2.9	14	82	14	55	82	0	17	0	0.67
53557600--53557633	16	2.1	17	88	5	52	82	0	17	0	0.67
53558251--53558311	27	2.3	26	75	13	61	49	1	3	45	1.28
53562208--53562233	13	2.0	13	100	0	52	46	7	7	38	1.61
53564458--53564640	69	2.7	69	82	2	208	35	22	19	22	1.96
53564653--53564874	58	3.8	59	80	4	229	27	22	14	35	1.93
53568995--53569140	37	3.9	37	95	0	238	26	30	18	23	1.98
53569352--53569691	47	7.1	47	87	4	437	26	29	12	31	1.93
53574924--53575010	43	2.0	43	97	0	165	43	8	33	14	1.75
53577055--53577088	17	2.0	17	94	0	59	23	14	8	52	1.69
53577613--53577798	73	2.5	73	95	0	345	29	6	23	40	1.79
53580098--53580144	21	2.2	21	77	7	51	68	4	0	27	1.08
53586424--53586454	15	2.1	15	93	0	53	54	6	0	38	1.26
53586563--53586616	23	2.3	23	75	12	56	46	0	1	51	1.11
53586784--53586813	7	4.3	7	100	0	60	13	13	0	73	1.10
53587280--53587313	13	2.6	13	85	0	50	38	5	5	50	1.51
53591125--53591232	25	4.4	25	76	19	111	32	20	24	23	1.98
53593796--53593828	16	2.1	16	100	0	66	45	6	18	30	1.73
53602036--53602099	27	2.4	26	82	5	83	35	12	9	42	1.75
53602243--53602267	12	2.1	12	100	0	50	16	24	0	60	1.36
53604624--53604672	25	1.9	26	87	4	73	38	10	6	44	1.63
53606012--53606043	13	2.4	14	89	10	57	59	25	0	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53608053--53608090	20	1.9	20	94	0	67	13	36	21	28	1.91
53609278--53609398	41	3.0	41	83	2	154	33	14	29	23	1.93
53609317--53609383	20	3.3	20	64	4	53	35	13	31	19	1.90
53611875--53611916	9	4.6	9	86	13	59	54	21	2	21	1.56
53611884--53611917	14	2.4	15	90	9	54	55	20	2	20	1.56
53615816--53615892	37	2.1	37	79	16	88	54	3	0	41	1.19
53617442--53617473	15	2.1	15	94	0	55	65	6	15	12	1.44
53617861--53618021	29	5.6	29	67	16	93	19	14	29	36	1.92
53617924--53618043	58	2.1	58	81	6	136	19	16	27	36	1.93
53621299--53621340	21	2.0	21	81	9	50	45	7	4	42	1.52
53622753--53622930	27	6.6	27	80	3	160	28	29	15	26	1.96
53622774--53622929	82	1.9	81	85	3	215	27	29	16	26	1.96
53629940--53629985	20	2.5	19	83	13	60	63	6	8	21	1.46
53634515--53634575	30	2.0	30	84	12	81	34	3	1	60	1.23
53644052--53644088	6	6.0	6	87	6	56	78	2	2	16	0.98
53648353--53648394	21	2.0	21	95	0	75	21	14	16	47	1.82
53650493--53650543	21	2.4	21	86	0	75	27	7	33	31	1.85
53664355--53664392	16	2.3	17	86	9	60	60	0	2	36	1.11
53664387--53664469	31	2.7	31	80	12	91	37	4	2	55	1.34
53675494--53675526	16	2.1	16	88	5	50	45	3	0	51	1.16
53675833--53675859	10	2.7	10	100	0	54	22	33	11	33	1.89
53681595--53681691	25	3.9	24	75	18	92	19	23	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53681588--53681697	50	2.2	48	84	10	134	20	22	24	32	1.97
53682848--53682877	12	2.5	12	94	0	51	23	43	26	6	1.78
53685746--53685790	6	7.2	6	80	9	54	73	0	0	26	0.84
53685742--53685801	20	3.0	20	85	4	77	70	1	1	26	1.07
53695401--53695469	27	2.5	28	90	6	106	39	10	1	49	1.46
53695537--53695613	27	2.9	27	92	0	118	25	28	28	16	1.97
53695538--53695629	27	3.4	26	81	14	98	25	27	29	18	1.98
53695756--53695794	19	2.0	21	85	10	55	23	0	10	66	1.22
53695867--53695910	3	14.7	3	100	0	88	0	0	31	68	0.90
53695913--53695957	19	2.2	21	88	7	67	44	2	8	44	1.47
53699006--53699073	33	2.1	33	88	5	102	38	10	11	39	1.76
53702033--53702103	30	2.4	31	75	15	80	0	29	0	70	0.88
53702098--53702224	4	31.0	4	71	20	77	0	31	0	68	0.90
53702064--53702212	79	1.9	77	90	8	239	0	31	0	68	0.90
53702064--53702212	40	3.8	40	82	15	172	0	31	0	68	0.90
53702044--53702225	18	10.1	18	68	22	89	0	32	0	67	0.91
53702149--53702235	22	4.4	18	73	19	57	0	34	0	65	0.93
53702368--53702425	29	2.0	28	93	3	98	56	0	5	37	1.21
53702372--53702437	28	2.3	29	89	5	100	53	1	7	37	1.39
53705857--53705914	22	2.6	22	81	7	64	41	17	5	36	1.72
53707551--53707586	17	2.1	17	89	0	54	61	0	36	2	1.11
53708191--53708236	23	2.0	24	91	4	76	26	23	4	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53709456--53709504	25	1.9	25	83	4	62	44	14	12	28	1.81
53709475--53709801	76	4.2	77	90	3	444	49	25	6	18	1.71
53709475--53709801	153	2.1	157	86	5	450	49	25	6	18	1.71
53711801--53711984	41	4.5	41	91	5	300	28	19	20	32	1.96
53711801--53712028	123	1.9	120	81	12	275	28	20	20	31	1.97
53711801--53712015	82	2.6	82	87	2	254	27	20	20	32	1.97
53712529--53713518	493	2.0	493	99	0	1946	27	12	13	45	1.80
53716455--53716540	28	3.2	27	77	11	77	58	17	3	20	1.54
53716510--53716546	16	2.2	17	95	4	67	59	24	0	16	1.37
53716946--53716986	21	2.0	21	90	0	64	29	29	19	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240