genome.fa.s24.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  30  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10534786--10534846	32	1.9	32	83	12	81	44	4	1	49	1.33
10535195--10535244	13	3.8	13	78	0	64	32	6	26	36	1.81
10537789--10537857	22	3.1	22	81	8	86	42	15	23	18	1.89
10546020--10546055	2	18.0	2	100	0	72	0	50	0	50	1.00
10554984--10555016	16	2.1	16	88	5	50	63	0	3	33	1.10
10564382--10564438	28	2.0	29	89	3	89	29	0	0	70	0.88
10564387--10564445	28	2.1	28	87	0	82	28	1	0	69	0.98
10564415--10564464	26	1.9	26	87	0	73	34	2	2	62	1.18
10567448--10567492	9	5.0	9	88	0	72	42	22	11	24	1.86
10567602--10567645	18	2.4	18	88	0	61	13	2	43	40	1.57
10569216--10569277	23	2.6	24	76	5	72	32	22	27	17	1.97
10569264--10569332	26	2.7	26	82	6	79	39	24	18	17	1.92
10569289--10569339	26	2.0	26	84	7	68	37	23	21	17	1.94
10573005--10573031	2	13.5	2	100	0	54	51	48	0	0	1.00
10573048--10573218	77	2.2	77	83	5	213	47	21	10	21	1.80
10575078--10575123	23	2.0	24	82	4	58	32	26	0	41	1.56
10575268--10575306	3	13.3	3	86	5	53	66	0	2	30	1.05
10576283--10576339	28	2.2	25	81	9	60	26	14	15	43	1.85
10576578--10576853	126	2.2	126	86	5	373	30	15	21	32	1.94
10580021--10580491	29	16.1	29	83	12	574	30	0	24	44	1.57
10580043--10580486	148	3.0	145	85	10	573	30	0	24	44	1.56
10580313--10580352	20	2.0	20	100	0	80	30	0	30	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10582589--10582630	22	1.9	22	85	0	57	64	7	0	28	1.20
10582615--10582648	15	2.3	15	90	5	52	67	5	0	26	1.13
10582605--10582648	14	3.1	15	80	9	56	63	6	0	29	1.20
10582746--10582800	28	2.0	28	89	10	87	58	1	0	40	1.09
10582837--10582885	22	2.2	21	80	16	55	30	0	32	36	1.58
10582840--10582939	52	1.9	52	89	0	155	36	0	31	33	1.58
10582892--10582960	22	3.1	22	91	0	111	40	0	27	31	1.57
10583455--10583497	21	2.0	21	81	0	50	58	6	0	34	1.25
10583585--10583645	24	2.5	23	80	15	61	49	4	0	45	1.23
10583593--10583672	35	2.3	35	83	8	94	50	3	0	46	1.19
10585447--10585491	23	2.0	23	90	0	72	57	17	2	22	1.50
10585949--10585988	21	1.9	21	94	0	71	30	27	17	25	1.97
10586032--10586092	30	2.0	30	81	9	70	22	9	18	49	1.77
10586792--10586899	15	7.2	15	64	12	60	44	7	22	25	1.79
10586788--10586899	30	3.7	30	93	0	188	45	7	22	25	1.77
10591442--10591549	15	7.2	15	65	12	69	45	7	21	25	1.78
10591438--10591549	30	3.7	30	95	0	197	46	7	21	25	1.76
10598964--10599008	24	1.9	23	86	13	65	37	0	2	60	1.09
10601354--10601390	3	12.3	3	100	0	74	32	0	0	67	0.91
10610916--10610958	13	3.3	13	84	9	52	34	4	27	32	1.78
10620117--10620179	32	2.0	32	93	0	108	20	15	15	47	1.82
10621045--10621899	300	2.9	293	78	9	836	40	10	14	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10629212--10629278	22	3.1	21	81	10	82	38	22	25	13	1.90
10636186--10636210	3	8.3	3	100	0	50	68	0	32	0	0.90
10644471--10644501	11	2.8	11	95	0	53	19	48	3	29	1.64
10645044--10645136	18	5.2	18	89	0	123	27	23	17	31	1.97
10645044--10645136	36	2.6	36	92	0	150	27	23	17	31	1.97
10649190--10649220	11	2.8	11	95	0	53	19	48	3	29	1.64
10654243--10654487	124	2.0	125	86	4	352	30	14	22	33	1.94
10657718--10658412	23	26.3	29	77	16	573	29	0	24	45	1.58
10657775--10658392	51	12.0	52	78	14	501	28	0	24	46	1.55
10660551--10660584	15	2.3	15	90	5	52	67	5	0	26	1.13
10660779--10660820	22	1.9	22	90	0	66	33	0	33	33	1.58
10660792--10660850	30	2.0	30	93	0	100	33	0	35	30	1.58
10660770--10660872	52	2.0	51	85	9	138	34	0	33	32	1.58
10660822--10660913	22	4.2	22	83	10	125	40	0	29	30	1.57
10660822--10660913	44	2.1	44	89	4	141	40	0	29	30	1.57
10671681--10671740	30	1.9	32	83	6	79	46	1	3	48	1.28
10671667--10671740	35	2.2	33	77	15	80	48	1	2	47	1.24
10674981--10675079	44	2.2	44	96	0	180	28	15	25	31	1.95
10675013--10675202	57	3.3	57	92	0	308	33	12	24	30	1.91
10675114--10675150	7	5.3	7	90	0	56	37	2	29	29	1.71
10676798--10676931	40	3.4	39	71	11	112	26	14	24	35	1.93
10678480--10678598	60	2.0	60	86	3	168	42	3	9	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10678564--10678619	21	2.6	21	78	13	60	51	5	3	39	1.42
10684855--10684915	29	2.1	28	85	8	79	26	14	16	42	1.87
10687621--10687971	181	2.0	174	85	6	472	30	18	12	37	1.89
10697365--10697539	81	2.2	82	86	5	257	38	5	13	42	1.67
10698184--10698254	31	2.3	31	83	7	83	32	11	11	45	1.75
10707945--10707999	4	13.8	4	100	0	110	50	23	0	25	1.49
10710053--10710146	45	2.1	45	87	0	134	32	23	17	26	1.96
10710148--10710288	51	2.8	51	84	4	194	31	28	17	22	1.96
10712862--10712903	14	2.8	15	82	7	50	59	4	0	35	1.19
10713346--10713451	49	2.2	48	86	9	146	26	19	16	36	1.94
10717467--10717502	2	18.0	2	100	0	72	0	0	50	50	1.00
10719857--10719996	42	3.3	42	85	7	176	32	25	17	25	1.97
10719838--10719996	43	3.7	42	83	4	185	32	25	17	24	1.97
10721071--10721095	13	1.9	13	100	0	50	40	24	4	32	1.73
10721527--10721578	20	2.8	18	76	21	54	50	3	3	42	1.39
10721494--10721638	68	2.1	71	80	7	163	49	4	4	42	1.41
10723815--10723901	25	3.5	25	82	6	113	31	21	28	18	1.97
10734171--10734340	47	3.5	48	74	13	150	27	10	27	35	1.88
10734179--10734286	53	2.0	53	84	7	139	27	8	25	37	1.85
10734353--10734489	33	4.1	32	68	9	94	30	15	24	29	1.95
10734509--10734559	24	2.1	24	85	7	68	50	5	21	21	1.69
10742650--10742758	57	1.9	57	90	3	175	32	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10742882--10743016	67	2.0	67	91	0	216	24	17	29	28	1.97
10760051--10760089	18	2.2	18	100	0	78	56	10	0	33	1.33
10761631--10761905	41	6.7	41	95	0	487	24	27	19	28	1.99
10771692--10771735	23	2.0	22	86	4	61	29	40	4	25	1.75
10790851--10790893	19	2.2	19	91	4	68	32	0	0	67	0.91
10802021--10802067	22	2.2	21	77	7	51	31	10	4	53	1.55
10806584--10806649	30	2.2	30	83	5	80	63	1	3	31	1.19
10806791--10806846	29	2.0	29	86	10	80	60	0	1	37	1.07
10836389--10836431	19	2.2	19	91	4	68	32	0	0	67	0.91
10847550--10847596	22	2.2	21	77	7	51	31	10	4	53	1.55
10848558--10848591	18	1.9	18	88	5	52	64	2	0	32	1.08
10868810--10869072	40	6.6	40	86	3	309	27	28	20	23	1.99
10876087--10876224	43	3.2	43	86	4	188	28	34	16	20	1.94
10878971--10879001	10	3.1	10	95	0	53	51	12	19	16	1.76
10882028--10882074	24	1.9	24	83	12	60	40	8	4	46	1.54
10882093--10882248	75	2.1	77	87	4	228	30	10	14	44	1.79
10883040--10883154	21	5.5	21	77	4	88	31	39	0	28	1.63
10883040--10883143	7	14.9	7	70	0	64	28	41	0	28	1.63
10883040--10883143	14	7.4	14	76	4	84	28	41	0	28	1.63
10883143--10883172	14	2.1	14	93	0	51	46	26	0	26	1.53
10885034--10885081	14	3.5	13	86	8	60	27	2	4	66	1.21
10885138--10885184	20	2.3	20	88	0	67	29	8	4	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10888970--10889246	125	2.2	125	90	0	439	30	16	22	30	1.96
10899289--10899329	21	2.0	21	85	9	57	46	24	14	14	1.82
10909170--10909202	12	3.0	11	91	8	50	36	0	3	60	1.12
10910969--10911131	49	3.4	48	86	1	202	22	14	38	23	1.92
10912203--10912252	6	7.5	6	81	18	55	78	2	0	20	0.86
10912200--10912266	28	2.3	28	87	5	98	73	4	0	22	1.01
10912564--10912623	3	19.7	3	74	16	52	61	3	1	33	1.22
10912564--10912609	14	3.4	14	83	16	53	65	2	0	32	1.05
10912566--10912608	11	4.1	10	83	16	52	67	2	0	30	1.03
10919261--10919351	25	3.6	25	71	11	62	21	20	24	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240