genome.fa.s24.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  124  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38626101--38626352	54	4.5	54	77	11	227	40	18	19	21	1.92
38626237--38626351	27	4.3	27	82	0	140	40	15	20	23	1.90
38626172--38626297	65	1.9	65	90	0	198	42	15	19	22	1.88
38626154--38626323	92	1.8	92	87	2	252	41	16	19	22	1.90
38626127--38626354	119	1.9	119	90	0	366	39	17	20	21	1.92
38632948--38633001	18	3.1	18	71	17	51	33	0	12	53	1.39
38635992--38636054	19	3.3	19	75	0	63	31	22	22	23	1.98
38636019--38636121	53	1.9	53	94	3	181	30	28	22	19	1.98
38647739--38647875	32	4.3	32	89	0	195	37	21	21	19	1.94
38648047--38648128	24	3.4	24	89	0	128	47	24	7	20	1.75
38648153--38648427	27	10.2	26	75	7	117	23	17	18	40	1.91
38648127--38648282	55	2.9	54	78	5	129	21	17	21	39	1.92
38648138--38648443	81	3.8	81	78	7	230	23	17	19	39	1.92
38648301--38648534	54	4.3	54	76	7	179	23	16	18	40	1.91
38648326--38648534	27	7.7	27	84	1	213	22	16	19	41	1.90
38654506--38654629	32	3.9	32	80	4	124	39	17	19	23	1.92
38658424--38658750	50	6.6	50	83	2	340	22	28	21	27	1.99
38658424--38658703	150	1.9	148	86	3	400	22	28	21	27	1.99
38666014--38666080	34	2.0	34	96	0	125	25	2	29	41	1.70
38671855--38671904	12	4.0	13	75	15	52	36	0	40	24	1.55
38672568--38672977	27	15.3	27	81	2	430	42	20	17	19	1.89
38673342--38673430	28	3.2	28	90	1	135	22	21	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38677574--38677608	18	1.9	18	88	11	54	22	20	0	57	1.41
38678521--38678567	20	2.4	19	85	3	58	12	4	4	78	1.04
38687719--38687747	8	3.6	8	100	0	58	75	0	0	24	0.80
38690896--38690947	27	2.0	27	84	3	70	44	21	15	19	1.87
38691054--38691166	27	4.2	27	82	4	138	22	21	17	38	1.93
38693429--38693490	28	2.2	28	91	2	99	30	24	24	20	1.99
38693832--38693890	27	2.2	27	90	0	91	18	18	20	42	1.90
38696141--38696214	28	2.4	32	75	25	86	28	24	22	24	2.00
38696146--38696211	28	2.4	28	87	12	100	25	24	24	25	2.00
38696477--38696518	16	2.7	16	96	3	77	45	14	11	28	1.80
38696565--38696691	54	2.4	54	84	7	152	16	18	20	44	1.86
38696565--38696704	27	5.2	27	80	5	124	17	17	19	45	1.85
38699057--38699122	28	2.4	28	82	7	73	30	21	22	25	1.99
38699434--38699585	27	5.6	27	78	6	139	17	15	21	44	1.86
38699432--38699575	54	2.7	53	78	7	155	17	16	22	43	1.88
38699433--38699585	81	1.9	81	84	2	209	17	15	22	44	1.86
38712266--38712605	51	6.7	51	79	6	350	30	15	25	29	1.96
38712262--38712605	102	3.4	101	88	2	469	29	15	25	29	1.96
38713670--38713706	19	1.9	19	89	10	58	43	5	5	45	1.49
38714135--38714212	39	2.0	39	94	0	138	43	14	6	35	1.71
38715136--38715176	15	2.7	15	96	0	73	7	4	46	41	1.53
38715634--38715938	142	2.2	142	91	0	486	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38739259--38739293	16	2.2	16	89	0	52	0	34	0	65	0.93
38739521--38739582	19	3.0	21	79	15	67	59	0	1	38	1.07
38739521--38739582	17	3.5	17	83	14	72	59	0	1	38	1.07
38739526--38739562	5	7.6	5	93	6	67	59	0	0	40	0.97
38746745--38746775	15	2.0	16	93	6	55	77	6	0	16	0.97
38747333--38747374	9	4.7	9	80	11	50	16	0	0	83	0.65
38747333--38747375	14	3.0	14	86	10	52	18	0	0	81	0.69
38756027--38756111	41	2.1	41	93	0	143	27	23	23	25	2.00
38756726--38756760	14	2.4	15	90	4	54	57	0	14	28	1.38
38756815--38756850	18	2.0	19	89	10	58	16	5	5	72	1.23
38761177--38761264	20	4.4	20	72	11	63	35	22	17	25	1.95
38763759--38763803	17	2.6	17	82	0	54	24	26	26	22	2.00
38772335--38772486	43	3.5	43	86	3	198	30	25	17	25	1.97
38789394--38789452	31	2.0	29	83	6	73	62	11	11	13	1.54
38790852--38790882	7	4.4	7	91	0	53	3	22	0	74	0.96
38795353--38795528	50	3.5	50	84	5	221	35	14	14	36	1.86
38795351--38795568	100	2.2	99	77	9	221	33	13	12	39	1.83
38799406--38799432	12	2.2	12	100	0	54	29	0	14	55	1.40
38807362--38807409	20	2.3	22	89	7	73	14	25	18	41	1.88
38820475--38820507	17	1.9	17	93	0	57	0	21	6	72	1.05
38824265--38824394	41	3.2	41	86	1	190	22	28	16	33	1.95
38824297--38824356	20	2.9	22	68	14	63	25	30	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38828941--38828984	19	2.3	19	84	0	61	61	2	11	25	1.41
38829936--38830003	16	4.2	16	92	0	100	29	0	33	36	1.58
38829984--38830074	45	2.0	45	87	2	130	32	5	27	34	1.80
38829984--38830093	45	2.6	43	80	9	129	34	5	28	31	1.80
38830215--38830269	25	2.2	25	84	9	69	52	1	0	45	1.11
38830537--38830587	25	2.0	26	88	3	77	43	0	0	56	0.99
38830537--38830586	26	1.9	26	84	8	66	42	0	0	58	0.98
38835565--38835609	24	1.9	24	86	4	65	37	2	11	48	1.51
38835690--38835899	106	2.0	106	90	1	332	29	20	7	42	1.78
38836258--38836306	21	2.4	20	83	16	57	44	0	4	51	1.20
38837411--38837496	19	4.3	19	78	16	84	38	0	4	56	1.20
38838641--38838688	18	2.6	19	83	12	64	25	2	0	72	0.95
38839300--38839459	43	3.7	43	78	7	155	26	25	18	28	1.98
38839300--38839459	87	1.8	86	81	4	196	26	25	18	28	1.98
38839335--38839460	44	2.9	43	82	6	155	25	25	17	31	1.97
38839828--38839963	66	2.1	66	90	0	209	11	26	18	43	1.84
38845357--38845574	9	25.3	9	68	21	112	33	2	20	43	1.65
38845361--38845432	25	2.9	25	82	0	90	31	2	22	43	1.68
38845478--38845541	25	2.5	25	79	2	74	39	0	18	42	1.51
38845490--38845574	37	2.4	37	88	5	131	34	0	20	45	1.51
38845497--38845565	16	4.0	16	74	17	66	33	0	18	47	1.49
38845647--38845738	30	3.1	30	93	0	157	43	1	10	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38845739--38845839	20	5.2	20	79	11	129	38	3	6	50	1.48
38845585--38845892	57	5.4	56	82	9	301	40	3	9	46	1.52
38845854--38845885	15	2.1	15	94	0	55	40	9	0	50	1.35
38846161--38846193	15	2.3	15	94	5	59	48	6	6	39	1.53
38846674--38846717	19	2.2	20	84	4	54	29	2	40	27	1.68
38847165--38847202	20	1.9	20	88	0	58	57	10	0	31	1.32
38848746--38848784	21	1.9	21	94	5	71	25	7	10	56	1.59
38848799--38848862	29	2.1	31	85	5	87	29	3	3	64	1.24
38850240--38850545	96	3.0	96	82	11	344	30	20	22	26	1.98
38850136--38850763	210	2.9	212	84	6	791	30	18	22	28	1.98
38850336--38850763	114	3.7	114	88	1	615	30	19	22	28	1.98
38850336--38850763	229	1.9	229	88	2	646	30	19	22	28	1.98
38851251--38851291	21	2.0	21	85	9	57	24	0	41	34	1.55
38851272--38851336	14	4.6	14	72	14	53	23	0	44	32	1.53
38851535--38851565	14	2.1	15	94	5	55	29	0	32	38	1.57
38851628--38851666	17	2.4	16	84	12	53	30	0	33	35	1.58
38851635--38851667	17	1.9	17	93	0	57	27	0	36	36	1.57
38852001--38852030	6	4.8	6	95	4	51	70	0	0	30	0.88
38851998--38852049	18	2.8	18	81	13	61	71	1	1	25	1.07
38852008--38852060	19	2.6	20	82	11	63	66	5	1	26	1.25
38852352--38852629	84	3.3	83	80	5	254	26	17	23	32	1.97
38852893--38852950	16	3.6	16	80	0	62	12	43	18	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38852879--38852951	32	2.4	30	76	15	76	12	41	20	26	1.87
38854144--38854170	14	1.9	14	100	0	54	14	25	14	44	1.84
38855105--38855387	9	29.8	9	68	25	72	47	12	1	39	1.48
38855114--38855475	56	6.2	56	81	10	415	46	11	1	40	1.50
38855182--38855419	34	6.7	34	71	21	152	47	12	0	40	1.44
38855231--38855263	16	2.1	16	100	0	66	45	24	0	30	1.53
38855396--38855441	22	2.1	22	91	0	74	45	10	0	43	1.39
38855316--38855480	90	1.8	90	87	5	244	46	10	1	40	1.49
38855462--38855608	9	17.2	9	71	13	96	40	18	2	38	1.62
38855467--38855499	16	2.1	16	100	0	66	45	24	0	30	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240