genome.fa.s24.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  166  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51794336--51794382	20	2.3	20	85	0	67	29	36	12	21	1.91
51795775--51795885	30	3.4	33	80	14	108	27	19	7	45	1.76
51795794--51795887	30	3.1	30	92	1	143	27	22	6	43	1.77
51795797--51795850	15	3.7	15	73	11	58	27	20	7	44	1.78
51795809--51795889	15	5.3	16	72	11	71	27	20	6	45	1.75
51800467--51800558	29	3.1	29	88	4	121	28	22	6	42	1.78
51801534--51801648	43	2.7	42	90	1	176	25	19	20	34	1.96
51801621--51801681	32	1.9	32	96	0	113	19	16	19	44	1.87
51807550--51807746	9	21.8	9	83	1	250	31	0	17	50	1.50
51807550--51807746	36	5.7	36	86	11	295	31	0	17	50	1.50
51807768--51807872	32	3.4	31	81	12	119	33	0	13	52	1.47
51807851--51807913	9	6.7	9	71	10	54	34	4	17	42	1.70
51808073--51808105	16	2.1	16	100	0	66	54	6	0	39	1.25
51808725--51808844	56	2.1	56	98	0	231	45	9	23	22	1.81
51809974--51810198	40	5.7	40	85	5	278	24	21	28	25	1.99
51816499--51816528	15	1.9	16	93	6	53	43	0	0	56	0.99
51817397--51817433	18	2.1	18	90	5	58	37	2	10	48	1.52
51823188--51823262	39	1.9	39	83	0	96	34	18	24	22	1.96
51823299--51823526	86	2.7	82	83	8	282	17	21	28	32	1.96
51823298--51823532	41	5.6	41	81	7	285	19	20	28	31	1.97
51824061--51824104	21	2.1	21	82	0	52	15	0	45	38	1.47
51824777--51824809	16	2.1	16	100	0	66	60	6	6	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51824887--51824922	15	2.3	16	90	4	56	61	0	2	36	1.11
51832867--51832900	15	2.3	15	100	0	68	41	5	5	47	1.52
51833201--51833353	66	2.3	66	98	0	297	47	12	3	36	1.58
51833321--51833431	20	5.8	20	75	12	115	47	6	4	41	1.49
51833380--51833431	21	2.5	21	87	3	70	48	5	1	44	1.38
51833332--51833449	55	2.2	53	84	9	148	45	8	3	42	1.51
51833464--51833517	25	2.2	25	83	6	65	50	22	3	24	1.65
51833549--51833743	9	23.5	8	69	17	66	46	20	4	28	1.69
51833556--51833645	25	3.6	25	76	8	85	44	22	5	27	1.75
51833549--51833727	16	10.8	16	67	16	80	46	21	4	27	1.70
51833549--51833743	66	2.9	65	82	7	205	46	20	4	28	1.69
51833605--51833685	25	3.2	25	77	6	76	48	19	4	27	1.69
51833649--51833727	41	1.9	41	92	0	131	49	18	3	27	1.65
51833674--51833736	25	2.5	26	75	15	69	49	17	3	30	1.62
51833692--51833739	25	1.9	25	91	0	78	43	18	4	33	1.69
51839097--51839258	66	2.5	66	84	2	200	39	16	28	16	1.89
51839235--51839284	21	2.4	21	89	0	82	32	14	46	8	1.73
51839621--51839824	43	4.7	43	81	2	214	25	18	28	26	1.98
51843394--51843435	19	2.2	19	87	8	59	59	11	4	23	1.51
51844143--51844200	28	2.1	28	83	6	73	27	20	0	51	1.47
51844718--51844767	26	1.9	26	84	8	66	24	0	10	66	1.22
51845208--51845262	21	2.6	21	79	0	65	21	7	40	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51849242--51849305	23	2.7	23	86	11	78	53	20	0	26	1.46
51853153--51853184	14	2.3	14	100	0	64	50	6	6	37	1.53
51853996--51854061	31	2.1	31	82	0	78	27	36	16	19	1.93
51867212--51867256	17	2.6	17	82	10	56	2	33	0	64	1.06
51868955--51869109	63	2.5	63	80	2	150	28	25	21	25	1.99
51876077--51876114	20	1.9	20	88	0	58	36	18	18	26	1.94
51876116--51876173	29	2.0	29	93	0	98	44	24	10	20	1.82
51876742--51876795	25	2.2	25	89	0	81	24	12	46	16	1.82
51877687--51878017	27	12.3	27	81	1	358	43	16	17	22	1.88
51877687--51878020	54	6.2	54	84	0	398	43	17	17	22	1.88
51878886--51878943	30	1.9	31	85	3	82	32	18	8	39	1.82
51895220--51895272	26	2.0	26	100	0	106	39	22	15	22	1.91
51895269--51895643	176	2.1	178	82	5	458	42	9	14	33	1.79
51897517--51897594	22	3.4	23	76	15	72	42	20	20	16	1.89
51899248--51899310	13	4.8	13	84	0	72	33	4	23	38	1.76
51904620--51904783	43	3.9	42	78	4	145	29	26	15	28	1.96
51905146--51905280	68	2.0	68	91	0	216	43	17	11	28	1.82
51908779--51908826	24	2.0	24	100	0	96	50	20	4	25	1.66
51915565--51915733	27	6.2	27	85	7	182	23	16	19	40	1.91
51916909--51916962	25	2.2	25	86	0	72	18	46	11	24	1.81
51921860--51921899	19	2.0	19	85	9	53	42	22	2	32	1.67
51922707--51922771	27	2.4	27	80	9	71	35	20	24	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51922879--51923117	27	8.8	27	77	10	193	25	17	18	38	1.93
51922893--51923117	54	4.1	54	84	0	252	24	16	19	38	1.92
51924293--51924346	25	2.2	25	86	0	72	18	46	11	24	1.81
51928934--51928986	3	17.7	3	92	0	61	33	7	0	58	1.26
51929064--51929103	17	2.4	17	82	0	53	20	2	2	75	1.04
51931841--51931881	14	2.9	14	85	3	55	85	4	2	7	0.81
51932277--51932319	5	8.8	5	80	14	54	83	0	16	0	0.64
51932273--51932320	20	2.3	20	86	13	71	83	0	16	0	0.65
51932277--51932320	16	2.6	16	89	7	61	84	0	15	0	0.63
51933208--51934099	44	19.5	44	71	11	224	31	18	20	29	1.97
51933167--51933368	92	2.2	91	90	2	323	26	17	25	30	1.98
51933167--51933426	92	2.9	92	84	5	300	28	18	24	28	1.98
51933714--51934059	93	3.8	91	75	13	257	32	17	20	29	1.96
51933714--51934070	137	2.6	135	82	5	421	32	17	20	29	1.96
51934031--51934144	44	2.6	44	81	2	113	30	21	20	27	1.98
51934464--51934628	45	3.7	45	76	9	176	33	18	20	26	1.96
51934463--51934628	89	1.9	89	89	5	264	33	19	20	26	1.96
51934822--51934865	23	2.0	23	90	4	72	63	20	0	15	1.31
51936112--51936152	3	13.7	3	89	0	55	31	7	0	60	1.24
51939178--51939210	18	1.9	17	88	11	50	42	18	15	24	1.88
51942094--51942191	28	3.6	26	81	9	115	31	16	25	26	1.96
51948075--51948163	10	9.3	10	68	24	50	38	1	2	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51948082--51948132	19	2.7	19	78	9	59	41	1	1	54	1.22
51948077--51948150	29	2.6	28	83	10	87	37	1	1	59	1.14
51948104--51948146	19	2.3	19	84	8	52	41	0	0	58	0.98
51948077--51948161	29	3.0	27	79	8	80	38	1	2	57	1.19
51956985--51957472	47	10.5	47	95	1	795	32	8	29	29	1.87
51956985--51957472	140	3.5	140	93	2	793	32	8	29	29	1.87
51957297--51957375	25	3.3	25	61	10	65	32	5	29	32	1.79
51957591--51957669	37	2.1	37	83	4	97	26	17	29	26	1.98
51963967--51964001	15	2.3	15	90	5	52	34	2	5	57	1.37
51964313--51964356	20	2.1	21	91	4	72	43	6	6	43	1.57
51972288--51972312	8	3.1	8	100	0	50	40	0	0	60	0.97
51973579--51973630	24	2.2	24	82	0	59	7	19	44	28	1.78
51981852--51981889	20	2.0	20	89	5	60	55	10	7	26	1.61
51984088--51984157	35	2.0	35	100	0	140	54	22	2	20	1.58
51995675--51996085	39	10.5	39	80	3	459	30	17	31	20	1.96
52001745--52002006	40	6.6	40	87	3	255	25	20	27	26	1.99
52001797--52002006	80	2.6	80	87	0	296	24	20	28	26	1.99
52001797--52002041	80	3.1	80	84	2	235	25	20	28	25	1.99
52005319--52005463	41	3.6	41	81	1	202	28	27	22	21	1.99
52009860--52009892	10	3.4	10	87	8	50	45	0	0	54	0.99
52027155--52027272	28	4.2	28	90	1	157	28	20	24	26	1.99
52027122--52027278	28	5.4	28	82	9	154	28	21	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52027609--52027805	27	7.3	27	86	6	258	17	19	19	43	1.89
52028374--52028422	20	2.5	19	80	6	62	14	14	6	65	1.45
52032099--52032269	72	2.4	72	87	1	256	26	5	12	54	1.60
52034310--52034349	13	3.1	13	77	0	53	42	17	10	30	1.82
52036133--52036236	28	3.7	28	93	0	172	25	25	25	25	2.00
52036610--52036837	54	4.2	55	82	5	286	18	15	21	44	1.87
52036609--52036839	27	8.6	27	82	5	252	19	15	20	44	1.87
52041065--52041213	43	3.5	43	85	1	192	30	24	18	26	1.98
52043322--52043401	31	2.6	31	89	0	115	43	20	15	21	1.87
52044562--52044595	18	1.9	18	88	5	52	29	5	2	61	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240