genome.fa.s24.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  101  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509754--31509806	26	2.0	26	88	0	79	18	18	33	28	1.95
31511187--31511263	23	3.3	23	85	0	100	6	19	25	48	1.73
31511232--31511310	24	3.3	24	73	1	70	13	16	25	44	1.85
31522299--31522330	16	2.0	16	100	0	64	56	0	6	37	1.25
31525622--31525844	40	5.6	40	93	0	374	22	28	21	27	1.99
31534023--31534205	40	4.6	40	95	0	312	22	28	22	26	1.99
31551604--31551645	20	2.2	19	86	4	57	52	9	2	35	1.47
31582445--31582476	14	2.3	14	100	0	64	71	6	15	6	1.26
31583313--31583404	35	2.5	37	82	8	107	36	14	18	30	1.90
31587093--31587155	28	2.3	27	81	10	74	57	1	1	39	1.18
31589817--31589875	11	5.3	11	76	10	57	18	30	3	47	1.65
31589817--31589872	22	2.5	22	88	2	76	19	28	3	48	1.66
31591770--31591809	7	5.9	7	85	14	57	47	0	0	52	1.00
31591841--31591947	21	5.0	22	82	10	132	43	28	0	27	1.55
31591840--31591947	43	2.5	44	85	10	143	43	28	0	27	1.55
31591924--31591972	24	2.0	25	84	8	64	48	34	0	16	1.46
31595086--31595524	125	3.5	125	90	3	681	28	21	18	31	1.97
31595659--31595699	21	1.9	22	85	5	57	51	34	0	14	1.43
31599105--31599144	14	2.9	13	88	7	53	22	12	0	65	1.26
31601262--31601305	15	2.9	16	86	13	74	18	4	6	70	1.27
31603397--31603447	25	2.0	25	100	0	102	27	7	3	60	1.42
31605003--31605068	34	1.9	34	96	0	123	27	24	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31614104--31614136	16	2.0	17	88	5	50	78	3	3	15	0.99
31614686--31614713	14	2.0	14	100	0	56	35	0	7	57	1.26
31616680--31616726	23	2.0	23	84	8	60	72	4	6	17	1.22
31617160--31617192	14	2.3	14	94	5	57	75	3	0	21	0.93
31617660--31617704	23	2.0	23	91	4	74	40	17	4	37	1.70
31617660--31617717	19	2.8	20	84	10	64	39	17	6	36	1.76
31618331--31618708	44	8.7	44	75	9	282	27	22	20	28	1.99
31618246--31618707	44	10.6	44	74	12	237	27	22	20	29	1.99
31618331--31618576	133	1.9	129	82	11	313	26	24	20	28	1.99
31618455--31618660	84	2.4	85	79	13	226	28	23	19	28	1.98
31618284--31618724	217	2.0	219	91	0	715	26	23	20	29	1.99
31618742--31618924	50	3.7	50	69	0	150	23	22	24	29	1.99
31618716--31618938	100	2.2	100	93	1	376	23	21	22	32	1.98
31618899--31618978	40	2.0	40	95	0	142	23	16	18	41	1.90
31618799--31619078	140	2.0	140	92	0	461	24	20	21	33	1.97
31618940--31619110	50	3.4	49	65	9	121	25	21	21	31	1.98
31618939--31619164	100	2.3	100	85	3	312	25	21	21	31	1.98
31618716--31619164	240	1.9	240	89	0	709	24	21	22	32	1.98
31619242--31619336	50	1.9	50	84	0	127	24	24	22	29	1.99
31619241--31619348	50	2.2	50	79	0	117	25	23	21	30	1.99
31619400--31619527	43	2.9	44	67	4	114	26	25	18	29	1.98
31619501--31619973	44	10.7	44	88	2	673	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31621192--31621222	6	5.2	6	96	0	53	16	12	3	67	1.35
31626170--31626216	23	2.0	23	84	8	60	72	4	6	17	1.22
31627023--31627080	22	2.6	22	81	7	64	44	17	1	36	1.59
31630206--31630286	15	5.4	15	68	11	67	46	7	20	24	1.76
31630202--31630311	30	3.7	30	93	0	184	47	6	22	23	1.74
31634903--31634978	15	5.1	15	67	10	57	46	6	22	25	1.76
31634899--31634978	30	2.7	30	94	0	133	47	6	22	23	1.74
31637424--31637455	15	2.1	15	94	0	55	15	6	9	68	1.36
31647974--31648017	22	2.0	21	83	12	54	40	0	0	59	0.98
31649507--31649539	17	2.0	16	94	5	57	60	0	0	39	0.97
31652391--31652571	62	2.9	63	78	14	203	40	3	3	51	1.36
31659262--31659300	3	13.0	3	84	10	53	33	2	33	30	1.72
31661756--31661792	8	4.5	8	86	6	56	13	2	0	83	0.74
31662944--31663002	29	2.0	29	86	0	82	35	6	11	45	1.67
31664299--31664403	52	2.0	52	100	0	210	32	23	1	41	1.65
31674780--31674933	28	5.5	28	95	0	256	25	12	28	32	1.93
31679523--31679553	15	2.1	15	100	0	62	38	6	32	22	1.80
31681383--31681457	15	5.0	15	75	20	52	45	1	2	50	1.24
31682036--31682091	22	2.6	21	75	8	58	41	1	3	53	1.29
31682041--31682095	23	2.4	24	75	9	60	38	1	5	54	1.34
31685612--31685770	43	4.0	42	75	16	165	23	15	25	35	1.94
31687089--31687136	24	2.0	24	83	0	60	4	20	27	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31690635--31690840	103	2.0	103	90	0	322	32	16	15	35	1.91
31696710--31696752	20	2.2	20	83	8	52	20	16	11	51	1.75
31702469--31702512	12	3.5	13	81	12	56	29	2	2	65	1.16
31704907--31705053	43	3.4	42	78	5	134	32	25	16	25	1.96
31706756--31706823	24	3.0	22	77	16	68	13	2	4	79	1.00
31706756--31706823	16	4.6	15	76	16	63	13	2	4	79	1.00
31708467--31708504	19	2.0	19	100	0	76	52	10	21	15	1.72
31709704--31709900	98	2.0	98	94	0	349	36	24	10	28	1.88
31710566--31710620	25	2.3	24	90	6	85	58	3	7	30	1.43
31710572--31710620	25	2.0	25	95	0	89	57	4	8	30	1.47
31711380--31711492	19	5.8	19	86	4	163	35	15	9	39	1.80
31711380--31711491	40	2.8	40	93	2	183	35	14	9	40	1.79
31711668--31712179	44	11.8	45	74	14	325	27	24	20	27	1.99
31711658--31712263	217	2.8	217	94	0	1061	27	23	20	28	1.99
31712342--31712790	44	10.2	44	62	13	145	24	24	21	29	1.99
31712250--31712902	132	4.9	132	96	0	1180	24	25	21	29	1.99
31717903--31718098	97	2.0	98	91	1	322	37	23	9	29	1.86
31718768--31718815	25	2.0	25	91	4	80	56	4	8	31	1.48
31719561--31719673	19	5.8	19	87	4	172	35	15	10	38	1.81
31719561--31719672	40	2.8	40	94	2	192	35	14	10	39	1.81
31719554--31719673	59	2.1	56	87	6	170	35	15	10	39	1.80
31726371--31726424	27	2.0	28	85	3	74	46	1	9	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31731272--31731377	53	2.0	52	82	10	126	44	2	2	50	1.31
31731571--31731611	16	2.6	16	92	0	73	26	31	4	36	1.78
31732113--31732160	19	2.6	19	78	18	57	60	0	2	37	1.09
31732652--31732696	9	5.1	9	91	2	74	31	11	13	44	1.78
31740979--31741044	11	6.4	11	72	24	63	37	4	0	57	1.19
31740961--31741053	39	2.4	39	85	8	143	33	3	0	63	1.10
31741027--31741066	21	1.9	21	89	0	62	37	2	0	60	1.11
31741026--31741084	22	2.8	21	80	14	59	40	1	3	54	1.27
31741584--31741752	65	2.9	54	79	17	180	31	1	22	44	1.63
31741637--31741881	130	1.9	130	89	0	382	29	1	23	44	1.63
31741632--31741881	65	3.8	65	84	5	344	30	1	23	44	1.63
31745717--31745939	114	2.0	113	85	7	301	22	19	23	34	1.97
31746294--31746342	18	2.5	21	80	9	59	61	10	2	26	1.39
31746932--31746958	7	3.9	7	100	0	54	11	0	44	44	1.39
31747408--31747889	230	2.1	231	91	0	786	28	18	19	32	1.96
31747409--31747960	230	2.4	229	87	2	667	28	18	19	33	1.96
31748253--31748296	19	2.3	19	84	0	61	31	43	2	22	1.66
31750316--31751154	37	21.9	39	66	16	160	45	10	5	39	1.60
31750335--31750462	57	2.3	56	86	4	168	46	10	3	39	1.56
31750422--31750543	37	3.3	37	87	0	172	49	11	4	34	1.61
31750480--31750847	115	3.2	114	89	3	521	45	10	5	38	1.62
31750485--31750847	57	6.4	57	84	3	480	45	10	5	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31750696--31751055	208	1.8	199	84	13	483	44	10	5	40	1.61
31750955--31750984	9	3.3	9	90	0	51	46	16	0	36	1.47
31750964--31751120	46	3.2	46	73	18	161	47	10	5	36	1.63
31750903--31751195	103	2.7	112	88	9	496	47	10	4	37	1.58
31750903--31751183	57	5.2	56	76	13	318	46	10	4	37	1.59
31751170--31751451	9	32.1	9	76	9	260	46	19	1	32	1.61
31756920--31756990	21	3.4	21	82	0	88	32	16	45	5	1.71
31757299--31757461	44	3.9	42	86	3	220	34	24	20	20	1.96
31757298--31757461	42	3.9	41	87	4	229	34	24	20	20	1.96
31757305--31757588	85	3.4	83	85	3	282	27	23	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240