genome.fa.s24.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  203  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61820459--61820598	40	3.5	39	75	5	129	40	22	17	20	1.92
61820585--61820930	112	3.1	113	91	1	541	27	23	22	26	2.00
61821041--61821137	41	2.4	41	78	3	97	21	21	27	28	1.99
61823590--61823625	16	2.4	15	90	9	56	30	30	2	36	1.72
61824768--61824821	27	2.0	28	96	3	101	37	3	3	55	1.35
61824777--61824836	27	2.2	27	84	0	75	41	5	1	51	1.33
61825209--61825248	14	2.9	14	88	0	53	52	5	2	40	1.37
61831168--61831333	66	2.5	65	84	6	201	39	19	28	13	1.89
61831320--61831378	21	2.8	21	86	0	82	32	18	44	5	1.72
61831667--61831886	43	5.1	43	91	2	354	21	20	26	30	1.98
61831667--61831886	85	2.6	86	89	5	347	21	20	26	30	1.98
61832021--61832064	21	2.1	21	91	8	72	45	29	11	13	1.79
61832209--61832238	15	1.9	16	93	6	53	70	6	0	23	1.11
61833169--61833219	24	2.1	24	89	7	77	58	21	11	7	1.58
61838154--61838208	24	2.3	23	82	14	67	54	0	0	45	0.99
61839176--61839307	31	4.4	31	75	12	121	27	19	9	43	1.83
61839131--61839283	59	2.6	60	86	4	211	26	20	9	44	1.81
61843762--61843819	28	2.1	27	84	12	73	43	5	1	50	1.35
61844250--61844405	78	2.0	78	87	2	224	39	14	15	31	1.87
61846028--61846098	23	3.0	23	70	4	61	30	23	28	16	1.97
61846022--61846154	25	5.3	25	68	14	78	35	23	22	18	1.96
61847742--61847808	30	2.2	31	81	2	73	56	5	10	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61852337--61852474	25	5.6	24	72	10	75	37	22	21	18	1.94
61852429--61852486	26	2.2	26	81	6	73	41	24	17	17	1.90
61853874--61853943	30	2.3	30	80	0	86	17	32	27	22	1.96
61854875--61854929	25	2.2	25	86	0	74	36	20	27	16	1.93
61860838--61860885	26	2.0	25	84	15	66	43	4	12	39	1.62
61861215--61861273	28	2.0	31	83	12	79	40	23	1	33	1.65
61868203--61868249	5	9.0	5	80	17	51	78	0	6	14	0.93
61878364--61878484	61	2.0	61	88	0	179	33	12	20	33	1.90
61881881--61881970	30	3.0	29	82	12	101	34	1	0	64	1.01
61881870--61881945	17	4.7	17	69	12	61	35	1	0	63	1.03
61881929--61881954	11	2.4	11	100	0	52	38	0	0	61	0.96
61881938--61881977	21	1.9	21	89	0	62	37	0	0	62	0.95
61881937--61881995	23	2.7	22	80	14	61	40	0	3	55	1.16
61896816--61897177	44	8.2	44	69	12	163	30	18	22	28	1.97
61898344--61898394	12	4.1	12	76	16	50	1	9	9	78	1.04
61899072--61899103	3	10.7	3	100	0	64	34	0	0	65	0.93
61899648--61899678	16	1.9	16	93	0	53	35	6	3	54	1.42
61921701--61922196	44	11.3	43	69	12	226	30	18	22	28	1.97
61921701--61922260	175	3.2	174	75	7	445	29	18	23	28	1.97
61921924--61922235	130	2.4	129	87	5	423	29	16	24	30	1.96
61923882--61923920	20	1.9	20	84	5	51	35	10	5	48	1.59
61927657--61927729	31	2.4	31	83	2	94	31	19	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61927671--61927740	31	2.2	32	85	9	92	27	22	12	37	1.91
61933022--61933051	15	1.9	16	93	6	53	26	6	23	43	1.78
61935067--61935101	14	2.6	14	90	4	54	34	0	2	62	1.10
61936686--61936746	31	1.9	31	96	3	113	31	8	6	54	1.56
61946894--61947038	74	1.9	74	86	9	206	64	3	19	13	1.42
61949103--61949136	16	2.1	16	88	0	50	35	5	5	52	1.50
61950804--61950860	29	1.9	28	86	10	78	57	7	0	35	1.26
61950890--61950942	11	4.8	12	71	21	53	67	1	0	30	1.01
61950890--61950942	20	2.5	20	84	9	70	67	1	0	30	1.01
61951019--61951056	13	2.9	13	96	0	67	36	5	15	42	1.70
61956510--61956626	41	3.0	41	77	8	143	35	23	16	25	1.95
61957495--61957552	4	15.2	4	77	22	63	0	25	0	74	0.82
61957496--61957551	18	3.1	17	87	12	76	0	23	0	76	0.78
61965586--61965702	41	3.0	41	70	13	109	37	23	14	24	1.92
61966580--61966667	6	14.3	6	73	11	72	1	20	4	73	1.07
61966580--61966625	17	2.6	17	89	6	65	0	26	0	73	0.83
61966579--61966622	23	1.9	23	86	9	63	0	25	0	75	0.81
61966595--61966654	17	3.6	17	80	12	72	0	20	6	73	1.05
61966930--61966959	15	2.0	15	100	0	60	40	6	6	46	1.56
61970496--61970610	9	12.3	9	72	14	74	28	0	0	70	0.93
61970499--61970562	28	2.3	28	97	0	119	28	0	0	71	0.86
61970496--61970601	39	2.8	39	87	7	146	29	0	0	69	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61970514--61970573	28	2.1	28	84	0	75	33	1	0	65	1.03
61970538--61970616	19	4.1	20	70	16	76	35	1	0	63	1.03
61970581--61970622	19	2.2	19	83	8	50	38	0	0	61	0.96
61970580--61970637	20	2.8	20	84	10	64	39	0	1	58	1.08
61982786--61982826	20	2.0	20	85	4	55	48	0	0	51	1.00
61982857--61982953	30	3.2	30	72	13	99	36	1	9	53	1.40
61982814--61982990	61	2.9	61	94	0	309	33	2	7	56	1.39
61982822--61982992	31	5.6	31	69	13	138	33	2	7	56	1.43
61986474--61986510	19	1.9	19	88	0	56	48	5	2	43	1.40
61987291--61987375	39	2.2	40	84	2	109	50	1	0	48	1.08
61987305--61987398	39	2.3	41	89	7	140	44	2	0	53	1.12
61987428--61987453	9	2.9	9	100	0	52	23	7	0	69	1.14
61987393--61987481	37	2.4	37	85	9	119	32	2	2	62	1.19
61987549--61987593	21	2.3	20	82	14	58	22	2	6	68	1.24
61987559--61987605	19	2.3	21	85	7	62	23	2	8	65	1.31
61987582--61987629	20	2.3	21	86	10	64	27	0	6	66	1.15
61987582--61987631	21	2.4	22	80	12	61	28	0	6	66	1.15
61994445--61994493	20	2.5	19	81	12	55	65	2	0	32	1.04
61994451--61994518	30	2.3	30	90	7	104	67	2	0	29	1.05
61994679--61994723	21	2.1	22	84	8	58	28	11	0	60	1.31
61994672--61994801	59	2.2	60	80	6	147	30	6	2	60	1.33
61994759--61994814	19	2.8	20	78	13	71	32	5	3	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61994711--61994803	30	3.1	29	73	15	82	32	3	3	61	1.28
61994760--61994815	20	2.8	20	89	2	87	32	5	3	58	1.37
62023282--62023341	25	2.5	22	73	10	57	40	3	0	56	1.16
62023403--62023456	27	2.0	27	88	0	81	20	33	29	16	1.95
62023597--62023710	59	1.9	59	94	0	201	33	0	14	51	1.43
62023851--62023907	27	2.1	27	90	0	87	21	40	24	14	1.90
62026295--62026353	21	2.8	21	97	0	109	45	13	16	23	1.83
62026298--62026352	10	5.3	10	78	8	65	45	14	16	23	1.84
62028344--62028382	19	2.1	18	85	4	51	25	2	2	69	1.14
62029187--62029211	13	1.9	13	100	0	50	40	16	16	28	1.89
62032674--62032714	20	2.0	20	100	0	82	24	19	29	26	1.98
62034406--62034533	66	1.9	66	87	3	186	42	17	27	12	1.85
62034917--62035152	42	5.6	42	83	2	267	23	17	28	30	1.97
62034914--62035132	83	2.6	84	84	2	269	23	16	30	29	1.96
62035002--62035170	43	4.0	42	80	6	119	24	18	28	27	1.98
62037380--62037431	21	2.5	21	77	0	59	57	1	1	38	1.21
62037689--62037727	11	3.6	11	89	6	62	56	0	0	43	0.99
62037746--62037816	32	2.3	31	82	2	79	33	2	2	60	1.26
62040603--62040640	18	2.1	18	95	0	67	0	15	47	36	1.46
62042535--62042585	26	2.0	26	88	7	77	19	19	21	39	1.93
62042543--62042592	26	1.9	26	95	0	91	18	20	24	38	1.93
62042545--62042614	26	2.8	26	85	6	83	18	24	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62042546--62042688	25	5.8	25	71	17	75	20	24	19	34	1.96
62046127--62046202	23	3.3	23	90	0	125	30	27	21	21	1.98
62048386--62048411	12	2.2	12	100	0	52	34	26	23	15	1.94
62058839--62058901	15	4.0	16	73	10	58	38	3	9	49	1.51
62059614--62059667	22	2.3	23	81	9	56	50	5	1	42	1.36
62062641--62062672	15	2.1	15	94	0	55	21	9	0	68	1.17
62064690--62064735	23	2.0	22	91	4	56	56	0	0	43	0.99
62064673--62064735	25	2.6	25	87	5	85	49	3	1	46	1.27
62068659--62068686	3	9.3	3	100	0	56	32	0	0	67	0.91
62074211--62074249	10	3.9	10	80	12	53	46	2	0	51	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240