genome.fa.s24.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  102  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31757436--31757651	43	5.0	43	91	5	323	22	20	23	33	1.97
31757436--31757636	85	2.4	85	94	3	343	22	19	23	34	1.97
31758832--31758866	14	2.4	15	90	4	54	71	2	0	25	1.00
31758870--31758962	30	3.1	30	84	4	118	27	22	3	46	1.67
31759342--31759399	3	17.7	3	83	13	62	65	1	32	0	1.03
31759344--31759399	10	5.6	10	74	16	53	64	1	33	0	1.04
31759453--31759495	18	2.3	18	84	4	50	32	48	13	4	1.63
31759681--31759753	8	8.8	8	81	17	69	80	0	19	0	0.71
31759693--31759755	15	4.0	15	91	6	90	80	0	19	0	0.70
31759689--31759753	23	2.7	23	90	4	94	81	0	18	0	0.69
31760368--31760465	17	5.6	17	78	9	90	25	11	13	50	1.74
31760366--31760465	35	2.9	35	79	4	105	27	11	13	49	1.75
31760518--31760600	18	4.7	18	73	16	66	30	13	10	45	1.77
31760630--31760901	17	15.5	17	69	13	142	33	14	10	41	1.81
31760683--31760903	18	12.6	19	73	12	113	31	14	11	42	1.80
31760630--31760901	35	7.8	36	71	10	161	33	14	10	41	1.81
31760808--31760915	34	3.2	34	80	5	112	30	12	12	44	1.79
31760943--31761040	17	5.8	16	69	14	54	25	10	13	51	1.72
31787772--31787817	22	2.1	21	88	4	65	2	23	4	69	1.17
31787810--31787855	18	2.5	20	77	22	57	6	13	2	78	1.04
31790857--31790899	19	2.3	19	83	0	50	41	0	4	53	1.21
31795906--31795948	11	3.7	11	76	11	50	32	2	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31797145--31797237	30	3.2	30	83	8	122	27	22	3	46	1.67
31797457--31797501	17	2.7	17	86	3	56	77	4	8	8	1.10
31797590--31797642	3	17.0	3	84	11	63	67	0	32	0	0.91
31797591--31797636	16	2.6	19	90	10	71	67	0	32	0	0.91
31797594--31797643	16	3.1	16	85	5	66	70	0	30	0	0.88
31797731--31797760	12	2.5	12	94	0	51	90	10	0	0	0.47
31797731--31797779	15	3.3	15	81	16	57	83	12	4	0	0.77
31797896--31797954	11	5.1	11	78	10	64	81	0	18	0	0.69
31797902--31797956	10	5.4	10	87	10	76	81	0	18	0	0.68
31797896--31797956	22	2.9	21	82	4	79	81	0	18	0	0.68
31798090--31798138	17	2.8	17	90	9	73	30	0	0	69	0.89
31798109--31798133	12	2.1	12	100	0	50	32	0	0	68	0.90
31798299--31798338	20	2.0	20	90	0	62	35	15	10	40	1.80
31798449--31798829	17	22.0	18	69	18	179	30	13	10	45	1.77
31798650--31798840	36	5.5	33	76	14	110	32	12	12	43	1.78
31798744--31798841	15	6.0	15	70	15	61	32	9	12	45	1.73
31807649--31807854	54	3.5	54	67	17	160	27	14	21	36	1.92
31807572--31807857	123	2.3	123	97	0	545	27	14	22	35	1.93
31806925--31807732	194	4.2	194	97	1	1543	30	13	20	36	1.91
31806925--31807800	385	2.3	382	94	2	1504	29	13	21	35	1.91
31807819--31808062	91	2.8	87	80	9	255	27	18	19	34	1.95
31807819--31808071	85	2.9	87	78	12	268	26	18	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31808281--31808342	30	2.1	30	90	6	99	19	9	29	41	1.83
31808345--31808559	88	2.5	88	81	6	224	30	15	18	35	1.92
31808744--31808845	30	3.4	30	87	2	143	30	20	3	45	1.69
31809214--31809254	3	13.0	3	90	10	64	65	0	34	0	0.93
31809214--31809254	13	3.2	12	90	10	64	65	0	34	0	0.93
31809214--31809254	19	2.2	19	95	0	73	65	0	34	0	0.93
31809215--31809264	16	3.1	16	91	0	73	72	0	28	0	0.86
31809221--31809263	19	2.3	19	87	0	59	72	0	27	0	0.85
31809528--31809605	23	3.3	22	81	18	79	80	0	19	0	0.71
31809533--31809604	8	8.8	8	78	20	60	80	0	19	0	0.71
31809545--31809596	7	7.0	7	85	10	68	82	0	17	0	0.66
31809543--31809607	15	4.1	15	88	8	76	78	0	21	0	0.75
31809528--31809599	37	1.9	37	88	5	110	80	0	19	0	0.71
31810221--31810288	18	3.9	17	76	5	73	29	17	11	41	1.85
31810226--31810288	17	3.6	18	77	10	76	30	17	11	41	1.84
31810217--31810305	35	2.6	35	83	5	110	30	14	12	42	1.82
31810296--31810336	21	2.0	21	85	0	55	21	2	12	63	1.40
31810370--31810433	18	3.7	17	72	17	60	28	12	12	46	1.78
31810481--31810695	17	12.4	17	70	11	123	31	14	11	42	1.81
31810481--31810549	36	1.9	36	85	2	95	30	15	8	44	1.77
31810481--31810681	18	11.5	18	72	6	83	31	15	11	41	1.82
31810481--31810695	35	6.2	35	73	7	136	31	14	11	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31811766--31811820	16	3.4	16	89	0	83	36	7	29	27	1.84
31813875--31814243	26	14.2	26	86	0	452	37	20	16	26	1.93
31820550--31820615	28	2.3	28	94	5	114	10	6	56	27	1.57
31821603--31821833	26	8.9	26	87	1	304	36	18	16	27	1.93
31821603--31821844	52	4.7	52	86	2	335	37	19	16	27	1.93
31821603--31821871	26	10.3	26	84	3	287	36	19	17	26	1.93
31822596--31822639	21	2.0	22	87	12	65	36	20	4	38	1.73
31823079--31823360	146	2.0	146	87	2	419	28	5	18	47	1.71
31823981--31824026	24	2.0	24	86	4	67	45	0	2	52	1.13
31844974--31844999	4	6.5	4	100	0	52	46	0	0	53	1.00
31854539--31854901	182	2.0	181	94	0	636	32	8	21	37	1.83
31855877--31856062	70	2.7	70	82	3	225	39	19	20	20	1.93
31858251--31858314	13	4.9	13	84	0	92	31	7	25	35	1.84
31860351--31860518	72	2.3	72	83	4	205	54	13	5	26	1.61
31860947--31861011	18	3.7	18	83	2	87	41	13	12	32	1.82
31863472--31863595	19	6.9	19	68	17	86	51	23	23	1	1.57
31863480--31863595	25	5.1	25	72	20	112	50	24	23	1	1.58
31867723--31867792	29	2.4	30	82	2	88	38	27	14	20	1.91
31875500--31875544	24	1.9	23	82	13	56	48	20	6	24	1.73
31876597--31876647	24	2.1	24	88	0	75	25	27	5	41	1.78
31878674--31878720	11	4.1	11	78	10	58	65	2	0	31	1.04
31879531--31879587	27	2.1	27	83	6	71	35	15	14	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31881689--31881718	13	2.3	13	94	0	51	46	0	10	43	1.37
31883419--31883478	15	3.4	17	76	21	61	46	1	28	23	1.62
31883831--31883867	9	4.1	9	89	0	56	32	10	10	45	1.74
31887187--31887315	65	2.0	65	90	1	206	37	20	17	24	1.93
31887251--31888149	101	9.3	101	73	10	646	38	17	15	28	1.90
31887601--31887872	88	3.1	87	77	3	271	40	15	13	30	1.87
31887601--31888032	88	4.8	87	73	9	256	40	15	14	29	1.87
31887867--31888053	88	2.1	88	84	0	239	39	17	16	27	1.91
31887500--31888032	276	1.9	277	81	1	647	39	16	15	29	1.88
31887712--31888215	189	2.7	188	80	1	517	40	15	14	28	1.87
31888187--31888270	42	2.0	42	100	0	168	40	9	19	30	1.83
31888285--31888567	101	2.8	101	87	1	397	39	19	16	25	1.91
31888489--31888822	87	3.8	87	77	7	275	38	16	14	30	1.88
31888507--31888822	88	3.6	84	76	9	251	38	14	14	31	1.87
31888931--31889220	101	2.9	100	81	2	321	37	17	15	29	1.91
31889302--31891944	101	27.0	101	70	14	1232	38	17	15	28	1.90
31889816--31890083	88	3.0	87	75	6	220	39	15	14	29	1.87
31890267--31890291	13	1.9	13	100	0	50	52	40	0	8	1.31
31890898--31891145	88	2.8	89	82	6	283	39	14	15	30	1.88
31890687--31893208	378	6.6	377	74	13	1212	38	17	15	29	1.90
31891846--31892120	88	3.1	87	81	6	281	39	15	14	30	1.88
31890625--31899451	478	18.5	475	73	12	4645	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31892020--31894829	101	29.0	100	73	10	1786	38	17	15	28	1.91
31892324--31892598	88	3.1	87	81	6	272	39	15	14	30	1.87
31892500--31894829	201	12.0	202	70	13	555	38	17	15	28	1.91
31892813--31893070	88	2.9	88	81	6	292	38	15	16	29	1.90
31892498--31894813	678	3.4	667	79	7	2149	38	17	15	28	1.91
31893512--31893754	87	2.8	85	81	5	272	38	16	15	29	1.90
31893479--31893754	88	3.1	88	79	5	285	37	17	15	28	1.91
31894087--31894252	87	1.9	87	81	4	201	42	17	14	25	1.87
31894247--31894429	87	2.1	88	83	1	224	37	18	17	26	1.93
31893968--31894713	188	3.9	184	76	7	516	39	17	15	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240