Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  178  of  240  ( 28759 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55029882--55029911
5
5.8
5
92
7
51
80
0
3
16
0.85
55030890--55030946
22
2.6
22
81
13
64
19
29
0
50
1.47
55037310--55037369
24
2.5
24
80
2
75
40
10
3
46
1.54
55040172--55040225
21
2.7
21
85
5
67
37
18
11
33
1.86
55040599--55041029
44
9.8
44
85
2
535
30
24
14
30
1.95
55040599--55041029
177
2.4
177
91
1
697
30
24
14
30
1.95
55040599--55041103
133
3.8
132
83
4
538
29
24
16
29
1.96
55040966--55041753
88
9.0
88
88
1
1030
26
26
22
25
2.00
55040966--55041753
351
2.2
352
85
2
1057
26
26
22
25
2.00
55043350--55043374
9
2.8
9
100
0
50
0
8
0
92
0.40
55048602--55048653
19
2.6
21
81
12
72
38
13
11
36
1.81
55049674--55049785
57
1.9
57
85
3
152
40
17
23
18
1.91
55049716--55050118
212
1.9
211
91
2
657
36
15
19
28
1.93
55049716--55050118
107
3.8
105
89
3
587
36
15
19
28
1.93
55053929--55053967
3
13.3
3
89
5
62
69
2
0
28
1.02
55064470--55064498
11
2.6
11
100
0
58
58
6
13
20
1.58
55065110--55065140
15
2.0
16
93
6
55
64
12
22
0
1.27
55065444--55065468
12
2.1
12
100
0
50
68
0
32
0
0.90
55066692--55066793
51
2.0
52
90
1
161
62
11
8
16
1.53
55066956--55066988
17
1.9
18
88
11
52
45
0
12
42
1.41
55068201--55068251
9
5.4
9
86
9
75
39
27
9
23
1.86
55068201--55068249
20
2.5
20
90
6
75
40
28
10
20
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55072395--55072446
25
2.1
25
92
7
88
25
26
9
38
1.86
55074921--55074948
14
2.0
14
100
0
56
57
0
0
42
0.99
55074907--55074939
10
3.3
10
95
0
57
51
0
0
48
1.00
55074970--55075054
32
2.6
33
77
5
93
44
18
10
25
1.82
55075035--55075100
35
1.9
34
84
6
89
48
12
7
31
1.68
55078217--55078375
39
4.1
39
82
0
183
35
31
16
16
1.92
55078232--55078375
78
1.8
78
88
2
218
34
29
17
18
1.93
55089603--55089631
14
2.0
15
93
6
51
34
0
13
51
1.42
55093883--55093962
29
2.8
29
80
0
106
42
6
18
32
1.75
55093874--55093961
29
3.0
28
78
8
95
38
6
20
34
1.79
55096398--55096437
16
2.5
16
95
0
71
22
12
20
45
1.84
55097407--55097643
59
4.0
59
92
3
388
51
8
4
35
1.53
55098020--55098063
18
2.4
18
92
0
70
43
11
22
22
1.85
55101996--55102058
3
21.0
3
85
0
54
31
7
3
57
1.43
55106192--55106218
6
4.5
6
100
0
54
48
0
0
51
1.00
55120292--55120318
14
1.9
14
100
0
54
88
0
0
11
0.50
55120435--55120478
4
12.0
4
81
13
51
72
0
27
0
0.85
55120435--55120514
22
3.5
22
77
9
72
70
0
27
2
1.01
55120434--55120478
18
2.5
19
85
7
67
71
0
28
0
0.87
55120450--55120506
14
4.0
14
75
16
55
73
0
24
1
0.92
55120434--55120485
18
2.9
17
77
11
59
69
0
28
1
0.99
55120914--55121580
284
2.3
285
94
1
1158
50
7
11
30
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55126732--55126757
9
2.9
9
100
0
52
57
0
0
42
0.98
55126769--55126815
19
2.7
18
84
12
62
61
12
0
25
1.31
55127069--55127106
10
3.7
10
89
3
58
0
28
0
71
0.87
55127177--55127241
27
2.4
27
94
0
112
16
33
33
15
1.91
55127706--55127744
20
2.0
20
84
0
51
64
0
5
30
1.15
55127742--55127768
7
3.9
7
100
0
54
44
0
0
55
0.99
55128740--55128779
21
2.0
20
85
5
53
55
0
0
45
0.99
55128714--55128783
28
2.5
27
84
11
79
51
0
2
45
1.16
55132538--55132589
19
2.8
18
72
16
52
32
3
0
63
1.12
55132688--55132717
15
2.1
15
93
6
53
10
0
6
83
0.81
55132952--55132988
9
4.1
9
89
0
56
45
10
10
32
1.74
55140216--55140415
102
2.0
102
90
0
319
32
27
19
21
1.97
55140320--55140456
42
3.5
40
71
17
117
33
27
17
21
1.96
55140318--55140490
75
2.3
75
89
0
265
34
26
19
20
1.96
55140184--55140521
177
1.9
177
90
1
543
32
26
18
21
1.97
55140362--55140489
33
3.6
33
71
17
112
35
25
20
18
1.95
55148819--55149135
127
2.5
127
85
4
415
39
15
9
36
1.79
55148819--55149175
127
2.8
127
83
6
370
38
15
9
36
1.80
55156633--55156781
63
2.4
63
82
4
169
24
28
22
24
1.99
55157326--55157376
23
2.3
23
83
6
70
70
3
21
3
1.20
55161274--55161353
28
2.9
28
90
0
115
62
6
11
20
1.49
55164889--55164928
16
2.4
16
91
8
62
47
20
0
32
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55166879--55166933
3
18.3
3
88
0
74
58
0
7
34
1.26
55176153--55176344
98
2.0
98
94
0
339
36
24
10
27
1.89
55176627--55176659
15
2.2
15
94
0
57
63
12
0
24
1.28
55177112--55177139
3
9.3
3
100
0
56
67
0
0
32
0.91
55177749--55177783
6
5.7
6
93
6
61
85
0
0
14
0.59
55178810--55178860
19
2.7
19
81
6
59
56
1
0
41
1.10
55178847--55178923
30
2.5
30
85
6
93
46
3
3
45
1.39
55178867--55178933
29
2.3
30
81
2
82
47
4
2
44
1.38
55179500--55179553
24
2.2
25
83
9
67
40
5
1
51
1.36
55182112--55182204
46
2.0
46
87
0
132
31
19
21
27
1.97
55187681--55187714
15
2.1
17
89
10
54
35
5
0
58
1.22
55195573--55195618
20
2.3
20
88
0
65
54
0
19
26
1.44
55195583--55195621
20
2.0
20
100
0
78
48
0
20
30
1.50
55199594--55199682
28
3.1
28
79
4
106
56
3
14
25
1.54
55203349--55203646
50
5.9
50
79
5
262
27
21
28
22
1.99
55209470--55209500
16
1.9
16
93
0
53
38
0
0
61
0.96
55209569--55209633
6
10.5
6
76
17
62
47
1
0
50
1.10
55209563--55209643
31
2.7
30
79
11
94
48
2
0
49
1.14
55228124--55228166
18
2.4
18
80
7
52
74
4
0
20
1.00
55246876--55246927
26
2.0
26
100
0
104
26
30
7
34
1.85
55247204--55247271
34
2.0
35
85
5
95
30
22
26
20
1.98
55248865--55248893
5
5.8
5
100
0
58
58
20
0
20
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55249574--55249603
12
2.5
12
94
0
51
6
23
40
30
1.80
55255310--55255364
18
3.1
18
100
0
110
40
5
21
32
1.76
55270609--55270698
18
5.0
18
84
0
126
32
15
23
28
1.95
55270610--55270698
36
2.5
36
88
0
142
32
15
22
29
1.95
55273411--55273507
22
4.4
22
70
14
65
48
1
4
46
1.28
55273435--55273487
26
2.0
27
88
3
81
43
0
3
52
1.19
55273467--55273509
19
2.3
19
84
8
52
41
2
2
53
1.26
55275553--55275624
13
5.3
13
71
17
58
77
0
4
18
0.92
55275549--55275603
20
2.7
20
82
17
69
78
0
5
16
0.93
55275554--55275629
29
2.6
29
80
12
84
78
0
3
17
0.89
55275556--55275628
4
18.8
4
71
20
57
78
0
4
17
0.91
55277491--55277539
25
2.0
25
83
0
62
38
0
16
44
1.48
55280278--55280356
39
2.0
39
87
0
113
26
15
20
37
1.92
55290061--55290085
12
2.1
12
100
0
50
16
16
8
60
1.58
55295869--55295913
17
2.7
16
86
6
54
20
22
28
28
1.98
55301854--55301901
12
3.9
12
81
13
62
2
16
2
79
0.93
55302329--55302375
24
2.0
23
87
8
67
6
2
6
85
0.82
55302329--55302386
26
2.3
24
82
11
71
6
1
6
84
0.84
55302329--55302386
25
2.3
24
83
16
73
6
1
6
84
0.84
55306805--55306833
14
2.0
15
93
6
51
55
6
6
31
1.53
55307439--55307518
3
25.7
3
75
9
54
63
1
7
27
1.29
55307478--55307518
15
2.7
15
88
0
64
68
0
4
26
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55311360--55311401
17
2.4
18
80
4
50
16
4
7
71
1.26
55311811--55311875
32
2.1
32
91
2
105
47
9
9
33
1.67
55317991--55318055
32
2.1
32
94
2
114
46
13
9
30
1.75
55319104--55319214
58
1.9
58
81
7
136
33
9
2
54
1.46
55319251--55319306
3
18.3
3
96
3
103
32
0
1
66
1.03
55319358--55319382
13
1.9
13
100
0
50
24
0
0
76
0.80
55321930--55321976
24
2.0
24
91
0
76
38
2
0
59
1.09
55322423--55322479
25
2.2
25
84
9
71
36
14
5
43
1.67
55322763--55322787
13
1.9
13
100
0
50
8
0
32
60
1.26
55325378--55325454
3
25.3
3
79
12
86
29
5
2
62
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240