genome.fa.s24.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  99  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954171--30954221	23	2.2	23	85	3	66	62	17	1	17	1.42
30954166--30954222	23	2.5	23	75	11	62	59	19	1	19	1.46
30957766--30957803	20	1.9	20	88	0	58	55	2	10	31	1.48
30964677--30965100	211	2.0	211	98	0	812	34	17	16	32	1.92
30972799--30972847	24	2.0	24	100	0	98	28	8	12	51	1.68
30974724--30974862	32	4.4	32	82	2	156	40	21	17	20	1.92
30974738--30974862	64	2.0	64	86	0	178	39	21	18	20	1.93
30975044--30975086	11	3.7	11	76	11	50	51	27	6	13	1.67
30975034--30975091	24	2.4	24	94	0	98	48	25	6	18	1.73
30975160--30975194	17	2.1	17	100	0	70	17	22	11	48	1.79
30975137--30975220	43	1.9	44	85	2	116	20	17	17	44	1.88
30975182--30975300	27	4.4	27	90	3	152	25	21	16	36	1.94
30975111--30975247	70	2.0	69	81	4	159	21	20	18	39	1.93
30975225--30975621	81	4.9	81	85	1	503	24	18	18	38	1.93
30975265--30975611	27	12.9	27	88	0	480	24	19	18	38	1.93
30975225--30975621	27	14.7	27	86	4	414	24	18	18	38	1.93
30979248--30979546	43	7.0	43	86	1	411	25	34	16	23	1.95
30983240--30983280	2	20.5	2	100	0	82	0	48	0	51	1.00
30983833--30983857	13	1.9	13	100	0	50	56	8	8	28	1.57
30983846--30983903	20	3.1	20	71	19	70	56	17	3	22	1.55
30985365--30985406	21	2.0	22	90	4	68	47	21	0	30	1.51
30985714--30985875	42	3.9	40	83	7	180	31	21	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30985736--30985875	42	3.4	41	86	4	183	34	21	19	25	1.96
30985714--30985874	83	1.9	84	83	6	211	31	21	19	27	1.97
30990096--30990130	17	2.1	16	89	5	52	62	5	0	31	1.18
30991736--30991793	25	2.3	25	87	0	80	22	12	22	43	1.86
30992921--30992957	18	2.0	19	85	15	51	40	5	8	45	1.56
31004726--31004805	41	2.0	41	87	0	115	21	18	21	38	1.93
31004775--31004826	25	2.1	25	88	0	77	19	17	25	38	1.93
31008585--31008615	8	3.9	8	100	0	62	25	0	0	74	0.82
31013274--31013597	29	11.1	29	73	7	192	23	26	11	38	1.89
31013347--31013616	87	3.1	87	77	5	276	23	27	9	39	1.86
31014672--31014696	12	2.1	12	100	0	50	60	0	0	40	0.97
31021509--31021587	40	2.0	40	84	0	104	20	26	30	22	1.98
31021730--31021827	51	1.9	51	89	4	153	26	24	2	46	1.63
31023882--31024195	125	2.5	126	91	0	513	29	20	17	32	1.96
31028291--31028432	37	3.8	36	73	15	110	37	12	11	38	1.79
31043550--31043591	20	2.1	20	86	0	57	42	7	33	16	1.75
31052957--31053020	25	2.6	25	74	16	69	75	6	1	17	1.09
31060322--31060386	27	2.4	27	84	0	76	20	20	23	36	1.95
31067920--31067965	23	2.0	23	84	12	60	30	2	0	67	1.03
31069028--31069087	31	1.9	32	83	16	81	61	3	1	33	1.22
31069173--31069236	24	2.6	24	80	11	60	59	0	1	39	1.07
31069348--31069386	17	2.3	16	83	12	51	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31069295--31069391	27	3.6	27	73	17	76	40	1	1	57	1.12
31069409--31069485	9	8.6	9	74	4	66	23	1	2	72	1.04
31075745--31075810	27	2.5	27	80	9	73	43	12	10	33	1.76
31083373--31083402	15	2.0	15	93	0	51	43	20	13	23	1.86
31089769--31089814	13	3.4	14	73	11	51	60	2	2	34	1.21
31089769--31089825	26	2.4	22	88	11	78	61	1	1	35	1.17
31091082--31091143	18	3.3	18	70	16	63	41	6	9	41	1.63
31091082--31091158	38	2.0	38	97	0	145	42	5	7	44	1.55
31096586--31096813	42	5.4	42	83	6	264	30	20	25	24	1.99
31096605--31096813	85	2.5	84	91	5	325	31	20	24	23	1.98
31097259--31097327	21	3.3	21	83	0	84	2	42	18	36	1.66
31102802--31102835	9	3.8	9	88	11	52	32	5	23	38	1.79
31102783--31103099	27	11.9	26	85	9	283	33	2	15	47	1.60
31102792--31103096	54	5.5	54	81	13	320	33	2	15	47	1.61
31102842--31103085	54	4.3	56	87	10	340	33	2	15	49	1.56
31102799--31103106	18	17.1	18	77	8	252	33	2	15	48	1.60
31105311--31105346	9	4.2	8	86	13	54	38	36	0	25	1.56
31105311--31105346	17	2.1	17	90	10	56	38	36	0	25	1.56
31106757--31106791	14	2.4	15	90	4	54	42	37	0	20	1.52
31107571--31107617	15	3.3	14	77	13	51	51	25	0	23	1.49
31107609--31107647	21	1.9	20	89	5	60	43	35	0	20	1.52
31107912--31108135	113	2.0	113	81	3	263	24	25	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31110983--31111018	7	5.0	7	86	6	54	58	0	0	41	0.98
31110983--31111018	15	2.5	14	86	4	54	58	0	0	41	0.98
31110975--31111024	22	2.3	22	96	3	93	62	0	0	38	0.96
31116975--31117004	5	6.0	5	100	0	60	60	0	0	40	0.97
31118933--31118968	18	2.0	18	94	0	63	22	30	16	30	1.96
31119275--31119815	269	2.0	269	98	0	1046	25	21	19	33	1.97
31123311--31123426	49	2.4	49	91	0	187	29	9	15	45	1.77
31125899--31126122	40	5.7	40	86	9	266	24	22	27	25	2.00
31125899--31126122	79	2.8	80	84	9	280	24	22	27	25	2.00
31125952--31126155	79	2.6	79	82	8	204	25	21	27	25	1.99
31134007--31134190	39	4.7	40	89	4	250	25	21	27	25	1.99
31133971--31134190	79	2.8	80	82	9	254	25	21	27	25	1.99
31134020--31134223	79	2.6	78	82	6	200	26	21	27	25	1.99
31143912--31143955	21	2.0	22	86	4	63	50	20	13	15	1.78
31155282--31155457	87	2.0	87	91	0	280	27	14	21	36	1.92
31161592--31161630	11	3.5	11	86	6	53	25	2	12	58	1.47
31163127--31163152	6	4.3	6	100	0	52	46	0	0	53	1.00
31164370--31164422	25	2.1	25	82	6	63	47	3	0	49	1.19
31164387--31164463	28	2.7	30	73	15	74	46	3	0	49	1.20
31164446--31164489	22	2.0	22	86	0	61	52	0	0	47	1.00
31165203--31165260	11	5.2	11	87	2	80	22	32	1	43	1.64
31165203--31165278	22	3.4	23	84	14	97	25	31	1	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31165202--31165276	33	2.2	33	84	9	98	24	32	1	42	1.63
31165202--31165278	11	6.9	11	74	21	72	24	31	1	42	1.63
31166513--31166538	7	3.7	7	100	0	52	26	0	15	57	1.38
31171445--31171489	21	2.1	21	84	8	56	33	40	24	2	1.68
31171608--31171789	45	3.9	45	79	9	213	37	0	13	48	1.43
31171663--31171802	25	5.8	25	77	11	157	40	0	15	45	1.46
31171618--31171802	95	1.9	95	95	0	334	38	0	14	47	1.44
31171688--31171843	70	2.2	70	95	0	285	37	0	13	48	1.43
31175365--31175419	21	2.6	22	85	8	78	27	9	36	27	1.87
31175531--31175577	19	2.6	18	82	3	58	59	4	0	36	1.17
31175639--31175748	36	3.5	34	69	29	109	52	7	0	39	1.35
31175701--31175781	37	2.3	32	78	21	83	51	6	2	39	1.40
31178183--31178254	34	2.1	34	100	0	144	43	19	5	31	1.74
31178949--31178985	17	2.1	18	90	5	58	37	0	5	56	1.22
31179132--31179207	24	3.1	24	82	1	71	42	1	34	22	1.62
31182250--31182358	51	2.1	53	83	8	136	27	15	23	33	1.95
31182235--31182411	26	6.8	26	72	10	103	28	14	23	33	1.94
31182199--31182370	77	2.2	78	80	3	204	28	16	25	29	1.97
31194992--31195016	11	2.3	11	100	0	50	24	20	24	32	1.98
31199348--31199398	23	2.2	23	85	0	66	29	7	19	43	1.79
31200788--31201162	30	12.5	30	80	9	347	41	16	8	33	1.79
31200850--31200895	23	2.0	23	91	0	74	41	15	13	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31200873--31201174	94	3.3	90	82	7	347	43	17	7	31	1.78
31200873--31201174	30	9.9	30	85	4	352	43	17	7	31	1.78
31202862--31202895	16	2.1	17	94	5	61	23	11	0	64	1.26
31205055--31205109	27	2.0	27	100	0	110	74	7	10	7	1.21
31208213--31208276	33	1.9	34	90	3	103	43	21	7	26	1.80
31224279--31224303	11	2.3	11	100	0	50	92	0	8	0	0.40
31225536--31226259	44	16.7	43	74	11	461	29	20	22	27	1.98
31225536--31226296	84	8.8	86	72	12	436	29	20	22	27	1.99
31225628--31226296	128	5.2	128	78	8	633	28	20	22	27	1.99
31225755--31226221	217	2.2	216	87	3	647	29	20	22	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240