genome.fa.s24.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  147  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46084898--46085075	27	6.6	27	83	3	205	26	15	28	29	1.96
46084899--46085054	82	1.9	81	88	3	233	26	15	28	29	1.96
46084895--46085075	82	2.2	81	83	2	229	27	15	27	29	1.96
46092471--46092496	12	2.2	12	100	0	52	50	7	0	42	1.31
46092974--46093151	27	6.6	27	83	3	205	26	15	28	29	1.96
46092975--46093130	82	1.9	81	88	3	233	26	15	28	29	1.96
46092971--46093151	82	2.2	81	83	2	229	27	15	27	29	1.96
46095788--46095837	20	2.5	20	86	3	64	36	12	2	50	1.51
46109670--46109786	56	2.1	56	98	0	225	23	23	8	44	1.81
46116241--46116463	40	5.6	40	86	5	274	25	28	21	24	1.99
46116243--46116463	119	1.9	120	83	6	297	24	28	22	24	2.00
46117591--46117709	55	2.1	56	96	1	222	22	23	9	44	1.81
46121445--46121479	18	1.9	18	88	11	54	54	25	2	17	1.57
46123076--46123204	39	3.3	39	82	0	141	46	20	4	28	1.70
46125203--46125238	15	2.5	14	86	8	54	44	8	0	47	1.33
46129005--46129143	39	3.6	39	80	2	138	45	22	3	28	1.69
46136125--46136174	20	2.5	20	93	0	82	24	34	0	42	1.55
46136676--46136726	25	2.0	25	84	3	66	31	0	31	37	1.58
46141835--46142059	40	5.7	40	82	6	224	26	27	20	25	1.99
46141991--46142068	40	1.9	41	82	10	97	26	28	20	24	1.99
46154580--46154623	17	2.8	16	83	10	63	31	20	2	45	1.64
46157614--46157664	20	2.5	20	90	0	75	31	25	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46158527--46158844	27	11.9	27	76	7	213	41	18	15	23	1.89
46158527--46158844	54	5.9	54	81	5	340	41	18	15	23	1.89
46158557--46158858	107	2.8	107	85	3	358	42	18	15	23	1.89
46158528--46158789	80	3.3	79	80	4	283	41	17	15	25	1.88
46158557--46158833	80	3.4	80	80	4	297	41	18	15	24	1.89
46159057--46159148	26	3.5	26	83	0	121	17	22	22	36	1.94
46159276--46159378	30	3.5	30	80	5	113	22	27	22	28	1.99
46165638--46165674	3	12.0	3	88	5	56	62	2	2	32	1.23
46170298--46170327	15	1.9	16	93	6	53	6	6	10	76	1.15
46171060--46171915	50	17.1	49	68	9	397	23	19	23	33	1.97
46171035--46171945	100	9.1	100	86	3	1170	23	19	23	33	1.97
46172043--46172165	44	2.8	44	87	2	176	27	21	21	29	1.99
46172238--46172491	129	2.0	129	92	0	427	24	22	18	34	1.96
46174622--46174660	14	2.8	14	84	0	60	15	2	5	76	1.06
46178838--46178958	46	2.8	42	77	11	113	57	4	8	30	1.47
46179266--46179299	3	11.0	3	87	6	50	61	2	2	32	1.26
46179258--46179296	16	2.5	16	87	4	62	64	5	2	28	1.28
46193945--46193999	23	2.3	24	75	9	60	56	3	1	38	1.28
46196952--46196991	16	2.5	16	95	0	71	42	2	30	25	1.68
46197237--46197268	16	2.0	16	93	0	55	34	0	0	65	0.93
46197257--46197306	12	4.2	12	78	12	50	44	2	0	54	1.11
46197253--46197305	11	4.7	11	75	11	54	39	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46197330--46197371	16	2.7	16	85	3	50	0	26	57	16	1.40
46198388--46198413	13	2.0	13	100	0	52	53	0	15	30	1.42
46205159--46205343	79	2.3	81	83	9	229	24	22	27	24	2.00
46205160--46205343	40	4.6	40	83	10	209	25	22	27	24	2.00
46205212--46205376	79	2.1	79	84	6	210	26	21	27	24	1.99
46213112--46213296	79	2.3	81	83	9	229	24	22	27	24	2.00
46213113--46213296	40	4.6	40	83	10	209	25	22	27	24	2.00
46213165--46213329	79	2.1	79	84	6	210	26	21	27	24	1.99
46225602--46225643	10	4.3	10	78	6	50	28	11	23	35	1.91
46230176--46230206	16	1.9	16	93	0	53	48	12	9	29	1.73
46231273--46231336	33	1.9	34	93	3	112	40	12	9	37	1.75
46234060--46234090	11	2.8	11	95	0	53	70	6	6	16	1.29
46255505--46255542	6	6.2	6	93	6	67	81	0	15	2	0.80
46261014--46261070	30	1.9	30	82	13	73	43	3	3	49	1.36
46261246--46261311	13	5.1	13	80	7	80	37	22	7	31	1.82
46270067--46270096	9	3.4	9	90	9	53	20	0	0	80	0.72
46270068--46270103	17	2.1	17	89	0	54	19	5	0	75	1.00
46273916--46274043	65	2.0	65	82	0	157	34	21	21	22	1.97
46286091--46286123	17	1.9	17	100	0	66	57	12	12	18	1.64
46291437--46291647	54	3.9	54	81	4	223	45	21	18	15	1.86
46291398--46291647	81	3.1	80	80	4	252	44	20	17	17	1.87
46291437--46291648	27	7.9	26	81	6	167	44	21	17	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46294179--46294224	22	2.1	22	84	8	58	47	8	2	41	1.46
46295543--46295569	14	1.9	14	100	0	54	37	22	25	14	1.93
46309344--46309382	17	2.3	17	81	0	51	10	5	10	74	1.21
46325958--46326016	30	2.0	30	89	0	91	33	18	13	33	1.90
46334643--46334676	18	1.9	18	88	5	52	70	0	2	26	1.01
46338050--46338095	20	2.3	20	96	0	83	47	4	23	23	1.69
46340138--46340180	20	2.2	20	100	0	86	23	9	34	32	1.87
46340420--46340455	17	2.1	17	89	0	54	25	8	22	44	1.80
46340425--46340463	17	2.3	17	86	0	51	30	10	17	41	1.83
46348988--46349034	23	2.1	22	84	11	60	27	2	65	4	1.22
46349180--46349227	24	2.0	23	84	4	60	35	0	2	62	1.07
46349446--46349506	29	2.1	30	84	9	81	31	8	14	45	1.74
46353524--46353576	20	2.5	21	87	9	72	66	0	26	7	1.18
46353551--46353634	39	2.2	38	82	8	107	61	0	26	11	1.30
46353675--46353714	12	3.3	12	82	0	53	60	2	22	15	1.47
46356180--46356493	157	2.0	157	97	0	592	26	16	22	35	1.94
46357512--46357568	29	2.0	29	89	0	87	31	29	12	26	1.92
46358919--46358965	24	2.0	24	100	0	94	27	21	17	34	1.95
46362159--46362218	28	2.1	28	81	12	68	65	0	1	33	1.03
46363199--46363293	33	2.9	32	75	6	86	38	4	2	54	1.32
46364791--46365227	77	5.5	78	83	3	457	35	15	11	37	1.84
46365265--46365431	85	2.0	85	91	2	273	34	10	10	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46369181--46369225	23	1.9	24	82	13	58	22	4	6	66	1.33
46383209--46383234	12	2.2	12	100	0	52	23	15	11	50	1.76
46393070--46393372	146	2.1	146	97	0	570	36	15	10	36	1.83
46401298--46401336	18	2.2	18	85	0	51	61	2	23	12	1.43
46402723--46402748	6	4.3	6	100	0	52	15	0	0	84	0.62
46407550--46407645	47	2.0	47	100	0	192	33	16	12	37	1.86
46413989--46414167	95	1.9	95	97	0	340	32	17	13	36	1.89
46420386--46420597	98	2.1	98	81	6	230	42	11	16	29	1.83
46421080--46421116	16	2.3	17	86	9	51	70	0	5	24	1.08
46423948--46424043	45	2.1	45	86	0	138	28	16	22	32	1.96
46424086--46424129	23	1.9	22	82	17	54	38	0	25	36	1.56
46431217--46431242	3	8.7	3	100	0	52	30	0	0	69	0.89
46431960--46432016	10	5.4	10	76	12	51	70	5	5	19	1.26
46432558--46432627	19	3.5	20	81	13	74	42	8	2	45	1.49
46432584--46432628	20	2.3	19	92	3	72	44	11	0	44	1.39
46432802--46432846	20	2.2	20	84	0	54	44	11	0	44	1.39
46433149--46433174	5	5.2	5	100	0	52	19	19	0	61	1.35
46433245--46433281	3	12.3	3	100	0	74	32	0	32	35	1.58
46433645--46433675	16	1.9	16	100	0	62	51	9	19	19	1.74
46433682--46434019	42	8.1	42	82	3	405	34	21	21	23	1.97
46433682--46434019	126	2.7	124	86	4	446	34	21	21	23	1.97
46438135--46438200	33	2.0	33	90	0	105	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46438650--46438684	17	2.1	17	100	0	70	17	11	22	48	1.79
46441714--46441765	23	2.3	23	89	0	77	36	0	13	50	1.42
46443938--46443973	16	2.2	16	95	0	63	25	0	33	41	1.55
46444169--46444223	25	2.2	26	78	12	62	49	1	0	49	1.11
46444208--46444242	18	2.0	17	88	5	52	54	0	0	45	0.99
46444279--46444313	16	2.2	16	100	0	70	31	0	11	57	1.34
46444259--46444337	24	3.5	24	73	16	62	36	0	10	53	1.35
46444448--46444489	15	2.7	16	82	14	52	52	2	0	45	1.13
46444457--46444498	15	2.9	15	82	10	52	52	0	0	47	1.00
46444446--46444743	120	2.5	121	93	4	505	49	4	2	42	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240