genome.fa.s24.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  149  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46766620--46766680	29	2.1	30	85	11	83	50	3	4	40	1.40
46771980--46772009	5	6.0	5	100	0	60	20	0	0	80	0.72
46780217--46780270	26	2.1	26	86	6	74	44	11	14	29	1.80
46790574--46790724	28	5.4	28	91	1	214	33	28	12	25	1.92
46798794--46798947	28	5.5	28	96	0	265	33	28	12	25	1.92
46801095--46801121	3	9.0	3	100	0	54	33	0	0	66	0.92
46802393--46802433	19	2.1	19	90	4	64	31	24	0	43	1.54
46802399--46802439	19	2.1	20	95	4	75	24	26	0	48	1.51
46818120--46818144	13	1.9	13	100	0	50	32	0	0	68	0.90
46830686--46830737	19	2.7	19	82	14	63	28	0	0	71	0.87
46830685--46830737	18	2.8	20	80	13	67	28	0	0	71	0.86
46830970--46831012	21	2.1	20	83	12	52	44	11	9	34	1.73
46832733--46832783	25	2.0	25	92	0	84	37	9	1	50	1.47
46834428--46834482	21	2.6	21	88	2	74	20	32	1	45	1.61
46835543--46835834	112	2.6	112	76	9	256	30	18	23	26	1.98
46835826--46836439	115	5.4	113	75	8	472	32	18	22	26	1.97
46841001--46841612	36	17.5	36	80	9	626	49	13	2	33	1.56
46840957--46841598	18	35.7	18	79	4	533	50	13	2	33	1.54
46840978--46841598	27	22.4	27	85	6	654	50	13	2	33	1.55
46841601--46841656	25	2.2	25	81	6	69	41	26	0	32	1.56
46841717--46841754	7	5.1	7	87	12	58	55	15	0	28	1.41
46841717--46841754	16	2.6	14	91	8	58	55	15	0	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46847258--46847308	21	2.4	21	86	0	66	33	17	45	3	1.67
46847680--46847881	42	4.7	43	81	2	176	34	19	18	27	1.95
46847737--46847881	42	3.5	42	85	5	204	35	21	18	24	1.95
46848500--46848707	43	4.9	42	81	7	172	29	31	16	22	1.96
46848498--46848708	86	2.5	86	85	2	264	29	31	16	22	1.96
46848542--46848720	43	4.2	43	88	0	232	29	32	15	22	1.94
46848570--46848746	43	4.1	43	83	2	140	32	32	15	19	1.94
46848539--46848746	86	2.4	85	81	6	222	31	32	15	21	1.94
46852584--46852643	7	8.6	7	88	0	75	33	50	0	16	1.46
46852576--46852643	21	3.2	21	82	0	82	32	48	0	19	1.49
46852584--46852659	28	2.7	28	83	6	82	34	48	0	17	1.47
46852584--46852652	14	4.9	14	75	10	52	33	49	0	17	1.47
46852695--46852746	14	3.8	13	80	14	52	34	46	1	17	1.59
46853137--46853180	20	2.3	19	80	7	52	63	6	6	22	1.43
46853198--46853338	41	3.5	41	95	0	239	30	29	21	17	1.97
46856803--46857006	43	4.7	43	81	6	207	33	22	15	28	1.94
46856803--46857004	86	2.3	86	83	3	237	34	21	14	29	1.94
46856819--46857082	43	6.1	42	80	8	194	31	20	18	30	1.96
46868843--46869119	151	1.8	151	88	0	419	26	28	18	26	1.98
46875332--46875369	20	1.9	20	89	10	60	21	28	10	39	1.86
46876718--46876747	13	2.3	13	94	0	51	73	6	3	16	1.18
46886564--46886588	8	3.1	8	100	0	50	88	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46894205--46894274	25	2.8	25	84	0	104	25	21	27	25	1.99
46903496--46903564	28	2.5	28	86	6	88	27	13	26	33	1.93
46914689--46914741	22	2.4	22	78	9	54	35	0	1	62	1.06
46915377--46915471	43	2.2	42	80	9	102	44	0	2	53	1.12
46915409--46915472	17	4.3	16	68	22	50	42	0	1	56	1.09
46915410--46915492	43	1.9	43	90	4	132	44	3	1	50	1.27
46917472--46917580	22	4.7	22	68	24	64	49	1	6	42	1.39
46930972--46931264	145	2.0	145	98	0	568	21	13	29	35	1.92
46931714--46931921	103	2.0	103	99	0	407	20	16	22	40	1.91
46932810--46932848	18	2.2	18	86	4	53	12	20	46	20	1.83
46936104--46936154	25	2.0	25	100	0	102	49	3	19	27	1.66
46936225--46936266	20	2.2	19	83	12	50	59	0	19	21	1.38
46940572--46940722	35	4.3	35	80	5	162	39	30	11	17	1.86
46940572--46940721	70	2.1	70	86	2	203	39	30	12	18	1.86
46947506--46947538	15	2.2	15	89	10	50	66	0	0	33	0.92
46947503--46947541	16	2.5	15	80	19	53	61	0	0	38	0.96
46955533--46955584	16	3.0	16	76	23	52	46	0	28	25	1.53
46955902--46955948	18	2.6	18	93	0	76	40	38	2	19	1.63
46956048--46956114	9	7.4	9	86	0	80	22	8	23	44	1.81
46956048--46956114	27	2.5	27	82	0	89	22	8	23	44	1.81
46957468--46957519	25	2.1	24	82	3	59	26	1	1	69	1.10
46959048--46959086	18	2.2	18	95	0	69	23	25	10	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46962609--46963117	125	4.1	126	83	4	618	29	15	16	38	1.89
46963199--46963334	34	3.9	35	78	6	127	42	12	2	41	1.57
46964451--46964498	15	3.3	15	80	5	55	52	0	0	47	1.00
46964452--46964495	22	1.9	23	86	9	63	50	0	0	50	1.00
46967561--46967593	16	1.9	17	88	11	50	42	0	30	27	1.56
46967685--46967744	30	2.0	30	83	3	75	38	0	41	20	1.52
46969982--46970015	10	3.3	10	87	4	50	73	0	23	2	0.97
46969973--46970015	20	2.2	20	87	8	61	74	0	23	2	0.93
46969972--46970023	27	1.9	27	88	7	79	73	0	23	3	1.00
46971686--46971716	3	10.3	3	100	0	62	35	0	0	64	0.94
46995722--46995990	90	3.0	90	79	4	292	27	24	14	33	1.94
46996760--46996805	22	2.1	22	95	0	83	21	21	26	30	1.99
46997334--46997391	19	3.0	19	85	10	73	53	8	0	37	1.32
46999586--46999701	34	3.4	34	74	9	108	28	23	24	24	2.00
47001591--47001663	26	2.7	27	89	4	112	41	23	13	21	1.89
47001592--47001678	27	3.3	27	87	6	115	40	20	17	21	1.92
47002021--47002110	28	3.2	28	87	0	135	23	24	22	30	1.99
47005195--47005386	40	4.8	40	81	8	187	25	22	26	25	2.00
47005195--47005380	80	2.3	81	83	7	220	24	23	26	25	2.00
47005196--47005413	80	2.7	79	80	8	194	26	22	26	24	2.00
47010286--47010344	30	2.0	30	83	6	75	42	20	15	22	1.89
47010293--47010438	27	5.3	26	75	9	105	41	18	17	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47010322--47010437	54	2.2	53	81	12	130	42	18	17	21	1.89
47010782--47010871	28	3.2	28	90	0	135	27	26	18	26	1.98
47012870--47012931	31	2.0	31	100	0	124	41	16	9	32	1.80
47015453--47015493	20	2.0	20	100	0	82	31	19	14	34	1.92
47021224--47021346	29	4.2	28	71	10	86	13	16	41	29	1.85
47028905--47029048	75	1.9	74	88	6	220	45	10	11	31	1.75
47029025--47029445	138	3.1	138	93	2	695	40	9	5	44	1.59
47035613--47035761	74	2.0	75	88	3	221	45	8	15	30	1.76
47035737--47036159	138	3.1	138	92	0	704	41	8	6	44	1.60
47035917--47036129	67	3.1	67	62	21	152	41	7	7	44	1.60
47036858--47036920	31	2.0	31	96	0	117	49	20	3	26	1.64
47038558--47038598	20	2.1	20	86	4	57	19	4	26	48	1.69
47040099--47040141	22	1.9	22	85	4	59	39	16	4	39	1.69
47040350--47040398	17	2.8	17	73	14	55	46	2	0	51	1.12
47048066--47048115	24	2.0	25	85	11	68	20	0	8	72	1.10
47056242--47056660	49	8.6	49	87	6	570	28	30	8	32	1.87
47056241--47056660	152	2.9	146	90	4	634	29	30	8	32	1.87
47058259--47058283	13	1.9	13	100	0	50	36	16	16	32	1.90
47070892--47070924	17	1.9	17	93	0	57	69	3	3	24	1.16
47081001--47081041	19	2.2	19	100	0	82	41	0	17	41	1.49
47083890--47083926	9	4.1	9	92	0	65	45	13	10	29	1.77
47084139--47084197	29	2.0	31	86	6	86	20	40	0	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47084252--47084292	19	2.2	19	100	0	82	24	41	0	34	1.55
47084971--47084996	5	5.2	5	100	0	52	19	19	19	42	1.90
47085190--47085224	6	5.8	6	89	0	52	17	20	0	62	1.32
47085190--47085224	12	2.9	12	91	0	61	17	20	0	62	1.32
47090542--47090671	40	3.3	39	82	4	152	29	15	28	26	1.96
47094788--47095013	112	2.0	112	100	0	452	37	9	15	36	1.81
47104279--47104501	40	5.6	40	92	0	365	22	28	21	27	1.99
47116964--47117013	27	1.9	26	84	8	66	50	10	6	34	1.60
47122344--47122409	28	2.3	28	84	2	87	30	27	12	30	1.92
47123906--47123937	16	2.0	16	93	0	55	9	0	34	56	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240