genome.fa.s24.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  160  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50342239--50342316	5	15.8	5	76	14	65	79	2	17	0	0.84
50342227--50342320	19	5.0	19	78	10	95	80	3	15	0	0.83
50342231--50342318	14	6.5	13	76	15	72	80	3	15	0	0.84
50342601--50342888	97	3.0	97	91	1	443	27	15	9	47	1.76
50343737--50344099	86	4.2	86	81	4	363	29	20	23	26	1.99
50344266--50344355	44	2.0	44	95	0	162	33	15	21	30	1.94
50344266--50344386	44	2.8	44	86	5	147	31	18	19	31	1.95
50344365--50344649	147	1.9	148	88	0	428	30	17	21	30	1.96
50344377--50344680	147	2.1	147	85	1	412	30	17	22	30	1.96
50344392--50344725	147	2.3	146	81	4	377	31	16	21	30	1.95
50344870--50344956	44	2.0	44	86	0	120	32	13	24	29	1.94
50344891--50344986	44	2.2	44	84	3	122	29	18	26	26	1.98
50347435--50347849	109	3.8	109	88	0	582	32	16	18	32	1.93
50350157--50350284	62	2.1	61	89	4	195	49	21	15	14	1.79
50351529--50351586	29	2.0	29	96	0	107	20	25	3	50	1.64
50352930--50352954	4	6.2	4	100	0	50	76	0	0	24	0.80
50353089--50353139	24	2.1	25	81	3	59	50	0	7	41	1.31
50357828--50357852	7	3.6	7	100	0	50	28	0	28	44	1.55
50358240--50358291	19	2.5	20	84	12	61	38	0	3	57	1.17
50363333--50363418	45	1.9	45	95	0	154	18	15	30	36	1.92
50364016--50364092	37	2.1	37	97	0	145	28	18	12	40	1.87
50367656--50367695	19	2.1	19	86	9	55	20	5	12	62	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50367551--50367715	86	1.9	86	97	0	312	33	6	12	47	1.65
50373179--50373216	3	12.7	3	100	0	76	68	0	0	31	0.90
50373765--50373823	29	2.0	31	83	6	77	50	8	13	27	1.70
50378791--50378856	27	2.4	27	79	0	78	31	22	15	30	1.95
50386990--50387026	18	2.1	18	100	0	74	37	16	16	29	1.90
50390180--50390230	21	2.5	20	78	12	50	39	13	9	37	1.78
50392312--50392370	28	2.1	28	90	0	91	55	10	8	25	1.61
50393622--50393750	50	2.5	52	81	12	160	24	27	17	31	1.97
50401377--50401425	21	2.3	21	92	0	80	38	20	16	24	1.92
50404224--50404260	17	2.2	17	100	0	74	37	0	13	48	1.43
50405749--50405782	5	6.8	5	100	0	68	17	0	0	82	0.67
50410317--50410349	15	2.2	15	100	0	66	45	0	18	36	1.49
50412284--50412444	58	2.8	58	98	0	304	45	14	6	33	1.70
50438535--50438610	40	1.9	40	86	5	109	30	26	27	15	1.96
50438680--50438916	41	5.8	41	77	2	226	17	24	24	34	1.96
50438681--50438877	82	2.4	82	93	0	331	17	23	24	34	1.96
50438680--50438916	123	1.9	123	81	1	287	17	24	24	34	1.96
50438678--50438916	82	2.9	80	83	8	302	17	24	23	34	1.96
50439424--50439458	15	2.3	15	85	0	52	22	0	37	40	1.55
50441619--50441648	10	3.0	10	100	0	60	40	0	20	40	1.52
50444083--50444135	21	2.5	21	87	9	81	37	3	1	56	1.28
50444168--50444305	38	3.4	37	71	19	114	50	16	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50444208--50444348	32	4.4	31	69	22	103	48	14	1	34	1.53
50444208--50444456	97	2.5	97	89	6	326	48	15	0	34	1.51
50444293--50444464	12	14.3	12	72	17	101	49	15	0	34	1.49
50444291--50444357	21	3.0	21	72	18	64	47	14	1	35	1.54
50444152--50444436	97	3.2	83	77	18	243	49	15	0	34	1.50
50444376--50444872	9	57.2	9	69	17	216	49	19	1	29	1.59
50444376--50444463	23	3.5	25	74	18	67	50	18	0	31	1.47
50444513--50444630	25	4.8	25	80	6	141	44	21	3	30	1.68
50444406--50444783	197	1.9	196	88	5	575	49	19	1	29	1.58
50444625--50444697	37	2.0	37	97	0	137	49	17	2	30	1.61
50444710--50444872	25	6.4	25	86	1	218	47	20	1	31	1.58
50444517--50444863	34	10.0	34	72	14	167	47	20	2	29	1.62
50449779--50449844	21	3.1	21	86	0	87	33	18	43	4	1.70
50449829--50449856	12	2.3	12	100	0	56	39	17	42	0	1.50
50450282--50450405	43	2.9	42	80	3	140	29	19	20	30	1.97
50450292--50450585	42	7.0	42	78	9	258	26	21	19	32	1.97
50450293--50450583	85	3.4	85	79	8	240	27	21	19	31	1.97
50456886--50457170	144	2.0	142	91	1	462	16	13	21	48	1.80
50461523--50461568	16	3.0	16	75	6	51	56	0	2	41	1.11
50462767--50463063	81	3.7	81	82	5	336	27	13	12	46	1.79
50462792--50463100	82	3.8	82	79	8	312	27	12	12	47	1.77
50463079--50463128	6	8.5	6	93	2	84	18	0	14	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50462928--50463283	184	1.9	183	85	5	486	28	9	12	49	1.72
50463106--50463326	76	2.8	75	83	8	244	30	9	12	47	1.72
50463104--50463363	83	3.2	80	73	14	225	29	10	11	48	1.72
50469646--50469692	20	2.3	20	85	0	58	27	8	10	53	1.64
50470130--50470156	5	5.4	5	100	0	54	18	0	0	81	0.69
50470178--50470213	16	2.2	16	95	0	63	38	2	5	52	1.39
50479546--50479586	20	2.0	20	95	0	73	56	17	4	21	1.60
50480215--50480248	7	4.7	7	88	3	50	58	0	0	41	0.98
50485065--50485117	26	2.0	26	85	7	72	35	5	20	37	1.77
50485176--50485237	30	2.1	30	81	6	72	46	4	4	43	1.46
50488435--50488526	24	3.9	24	80	5	89	41	15	13	30	1.85
50488602--50488704	54	1.9	54	87	0	152	36	17	22	23	1.94
50488685--50488884	39	5.1	38	77	7	150	40	18	23	18	1.91
50488732--50488883	79	1.9	78	84	6	200	40	17	22	20	1.92
50488734--50488901	79	2.1	79	81	7	191	40	17	21	20	1.91
50488919--50489123	54	3.8	54	88	2	277	38	14	20	26	1.91
50489105--50489234	39	3.3	38	82	4	161	41	15	23	20	1.89
50493683--50493740	30	1.9	30	89	0	89	46	13	8	31	1.74
50496330--50496373	2	22.0	2	100	0	88	50	0	50	0	1.00
50499602--50499694	21	4.4	21	87	0	114	5	43	17	34	1.72
50501557--50501990	9	49.8	9	73	14	356	31	1	21	45	1.59
50501562--50501979	88	4.8	88	88	5	553	31	1	21	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50501899--50501990	25	3.6	25	81	5	85	28	1	21	48	1.57
50502100--50502143	23	1.9	23	95	0	79	38	0	18	43	1.50
50503250--50503287	18	2.1	18	95	0	67	50	15	7	26	1.72
50503949--50504662	365	2.0	365	91	0	1158	34	20	14	30	1.93
50504712--50504792	24	3.2	23	77	19	90	45	9	0	44	1.37
50504712--50504795	28	3.2	26	75	12	82	44	9	0	46	1.36
50505221--50505260	14	2.9	14	84	0	53	32	45	0	22	1.53
50505370--50505444	14	5.1	14	75	10	60	38	32	1	28	1.65
50505995--50506073	41	1.9	41	84	0	104	34	27	18	18	1.95
50506017--50506261	115	2.1	115	86	5	336	30	24	21	23	1.99
50506172--50506339	73	2.3	73	92	0	282	27	22	23	26	1.99
50506048--50506432	188	2.0	188	89	3	580	27	23	22	26	2.00
50506236--50506561	115	2.9	115	87	1	469	28	23	22	25	1.99
50506476--50506611	71	1.9	72	89	4	213	27	20	25	26	1.99
50506351--50506719	185	2.0	186	85	2	501	27	23	23	26	2.00
50506546--50506863	117	2.8	114	82	5	390	27	24	23	24	2.00
50508703--50508737	14	2.4	15	90	4	54	0	5	14	80	0.89
50521430--50521494	28	2.3	29	78	2	69	26	18	15	40	1.90
50535586--50535843	135	1.9	138	83	2	342	55	11	8	25	1.63
50535909--50535950	15	2.9	15	86	6	61	61	2	4	30	1.29
50536061--50536100	21	1.9	21	84	0	53	55	5	5	35	1.44
50536295--50536801	172	3.0	170	83	2	615	48	16	9	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50538339--50538369	16	2.0	15	93	6	53	45	12	12	29	1.80
50538869--50538894	11	2.4	11	100	0	52	73	26	0	0	0.84
50539128--50539376	135	1.8	135	89	1	392	54	10	8	27	1.62
50539557--50539587	16	1.9	16	100	0	62	48	6	12	32	1.67
50541486--50541526	13	3.1	14	82	10	50	48	19	17	14	1.81
50546020--50546044	10	2.5	10	100	0	50	64	8	8	20	1.46
50547545--50547573	14	2.0	15	93	6	51	6	24	0	68	1.13
50548975--50549257	91	3.2	91	84	3	344	25	22	14	37	1.93
50552704--50552755	20	2.6	20	85	8	70	13	0	38	48	1.43
50552807--50552844	19	2.0	19	100	0	76	42	10	5	42	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240