genome.fa.s24.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  143  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44835596--44837598	335	6.0	335	95	0	3510	29	9	22	38	1.86
44836421--44836451	16	1.9	16	100	0	62	41	0	19	38	1.51
44836756--44836786	16	1.9	16	100	0	62	41	0	19	38	1.51
44837509--44837579	36	2.0	36	88	0	106	25	8	28	38	1.85
44840799--44840896	40	2.5	40	84	0	124	36	21	22	19	1.95
44840794--44840896	20	5.2	20	72	0	89	36	22	22	18	1.95
44845683--44845721	21	1.9	21	89	5	62	43	15	25	15	1.86
44852007--44852062	28	2.0	28	96	0	103	32	8	17	41	1.81
44858473--44858530	18	3.2	18	75	22	59	10	24	3	62	1.43
44861535--44862345	270	3.0	270	89	1	1218	38	10	15	35	1.81
44863336--44863401	25	2.6	25	81	9	80	30	22	18	28	1.97
44863990--44864050	29	2.1	29	93	0	104	27	22	13	36	1.92
44874162--44874591	29	14.8	29	85	1	531	20	26	13	39	1.89
44880187--44880230	20	2.2	20	100	0	88	22	9	15	52	1.71
44883846--44883877	16	2.0	16	93	0	55	25	15	0	59	1.36
44884095--44884295	51	4.0	51	78	8	239	28	26	17	26	1.98
44884098--44884321	101	2.2	102	80	5	249	29	27	16	26	1.97
44889101--44889153	23	2.3	23	93	0	88	32	24	18	24	1.97
44913234--44913286	25	2.1	25	89	0	79	22	5	20	50	1.69
44914818--44915453	152	4.2	150	89	5	963	30	9	7	51	1.63
44914818--44915453	305	2.1	306	90	3	998	30	9	7	51	1.63
44917358--44917580	40	5.6	39	80	7	189	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44917440--44917615	79	2.2	80	80	2	194	25	21	28	24	1.99
44919728--44919775	20	2.3	21	92	3	80	39	0	0	60	0.97
44921417--44921451	18	1.9	18	88	0	52	25	34	8	31	1.86
44921711--44921778	24	3.0	24	76	6	70	42	33	22	1	1.62
44922002--44922828	28	28.4	28	83	9	946	49	23	0	26	1.51
44921972--44922812	62	14.3	59	82	10	893	49	24	0	26	1.54
44922343--44922400	17	3.3	19	68	25	54	46	31	0	22	1.52
44922738--44922812	29	2.7	26	95	2	96	52	21	0	26	1.47
44922001--44922828	57	14.2	56	81	9	865	49	23	0	26	1.51
44922815--44922870	26	2.2	25	78	9	58	30	8	8	51	1.64
44922827--44922881	26	2.1	26	96	0	101	23	7	9	60	1.52
44922851--44922994	55	2.5	57	75	12	152	34	9	8	47	1.67
44922977--44923001	10	2.5	10	100	0	50	44	8	0	48	1.32
44927811--44927861	21	2.4	22	87	9	70	70	11	5	11	1.32
44928368--44928416	25	1.9	25	83	4	62	26	12	2	59	1.44
44928491--44928540	22	2.2	23	92	3	84	50	0	26	24	1.50
44928491--44928541	11	4.5	11	87	2	66	49	0	25	25	1.51
44939549--44939610	23	2.7	23	89	0	97	40	24	19	16	1.91
44943685--44943732	21	2.5	18	75	18	51	20	29	8	41	1.81
44943690--44943740	21	2.4	21	83	0	75	23	31	9	35	1.87
44947519--44947738	50	4.4	50	81	1	156	23	28	19	29	1.98
44947506--44947636	49	2.6	48	80	8	138	25	25	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44947555--44947798	50	4.8	50	80	4	202	23	28	20	27	1.99
44947555--44947743	100	1.9	100	83	0	243	22	29	20	26	1.99
44952512--44952603	46	2.0	46	100	0	184	15	26	15	43	1.85
44954258--44954319	31	2.0	31	100	0	124	41	16	9	32	1.80
44960427--44960488	31	2.0	31	96	0	115	41	17	9	30	1.82
44968304--44968346	17	2.5	17	82	14	52	69	9	6	13	1.35
44989673--44989721	20	2.5	19	86	6	62	10	34	20	34	1.86
44993423--44993504	27	3.1	27	80	3	96	35	14	18	31	1.91
45001037--45001108	27	2.7	27	82	2	92	31	15	18	34	1.92
45002891--45002951	25	2.4	28	78	18	78	44	0	14	40	1.46
45003795--45003849	24	2.3	24	84	6	67	56	7	3	32	1.44
45004606--45004633	6	4.7	6	100	0	56	82	0	0	17	0.68
45020323--45020538	29	7.3	30	76	10	144	23	26	12	37	1.90
45025656--45025927	40	6.8	40	92	1	445	23	28	21	26	1.99
45025656--45025935	122	2.3	122	92	1	458	23	28	21	26	1.99
45034146--45034417	40	6.8	40	93	1	445	23	28	21	26	1.99
45034146--45034425	122	2.3	122	93	1	476	23	28	21	26	1.99
45037975--45038048	30	2.5	28	82	8	76	28	27	8	36	1.85
45038051--45038224	29	5.9	28	71	14	86	18	27	15	39	1.91
45040788--45041135	181	1.9	181	95	0	624	31	17	15	35	1.92
45042662--45042713	10	5.1	10	84	11	52	32	0	7	59	1.26
45052135--45052228	25	3.7	25	77	8	84	29	23	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45056591--45056635	22	2.0	22	83	8	56	40	4	0	55	1.20
45057018--45057054	18	2.0	19	89	5	58	5	37	0	56	1.22
45063391--45063419	14	2.1	14	100	0	58	27	13	20	37	1.91
45070452--45070488	18	2.0	19	89	5	58	5	43	0	51	1.24
45073626--45073762	50	2.7	50	82	0	157	24	22	29	23	1.99
45079507--45079699	80	2.4	80	82	5	221	26	29	20	23	1.99
45079477--45079646	40	4.3	40	90	0	234	25	28	21	24	1.99
45079477--45079699	120	1.9	119	81	6	272	26	28	21	24	1.99
45079631--45079708	40	1.9	41	82	10	97	26	28	21	23	1.99
45083350--45083535	50	3.7	49	80	7	173	28	22	25	23	1.99
45087178--45087290	47	2.3	49	90	6	194	33	7	28	30	1.84
45087258--45087318	28	2.2	28	97	2	115	37	0	26	36	1.57
45087211--45087363	77	2.0	74	94	3	270	35	5	28	31	1.79
45087285--45087705	47	8.8	49	90	4	612	33	7	29	29	1.86
45089931--45090158	40	5.7	40	86	2	307	24	21	28	26	1.99
45093407--45093946	47	11.6	47	89	5	776	32	8	29	29	1.87
45093407--45093946	96	5.8	94	85	8	690	32	8	29	29	1.87
45093407--45093946	190	2.9	190	89	4	816	32	8	29	29	1.87
45093815--45093889	38	2.0	38	97	0	141	30	12	28	29	1.92
45093768--45093935	85	2.0	85	89	2	257	30	11	30	27	1.91
45098637--45098749	47	2.3	49	90	6	194	33	7	28	30	1.84
45098717--45098777	28	2.2	28	97	2	115	37	0	26	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45098670--45098822	77	2.0	74	94	3	270	35	5	28	31	1.79
45098744--45099263	49	10.8	49	92	3	828	32	7	29	29	1.86
45098744--45099263	96	5.4	96	92	4	834	32	7	29	29	1.86
45104935--45104964	7	4.3	7	100	0	60	46	0	0	53	1.00
45108423--45108466	14	3.1	14	83	6	52	52	2	0	45	1.13
45108469--45108539	25	2.9	24	87	4	97	32	8	7	52	1.59
45108469--45108581	25	4.6	25	74	12	90	31	5	6	56	1.46
45109139--45109178	21	2.0	21	85	5	55	67	7	2	22	1.28
45123708--45123756	18	2.6	18	77	6	53	18	22	6	53	1.66
45125805--45125906	27	3.8	27	78	8	102	18	20	19	41	1.91
45125813--45125925	54	2.1	53	83	4	138	17	18	20	43	1.88
45128571--45128621	24	2.1	24	88	0	75	27	19	29	23	1.98
45128720--45128813	38	2.5	37	86	3	134	32	12	23	30	1.92
45129793--45130354	279	2.0	279	100	0	1124	42	12	12	33	1.80
45132782--45132834	26	2.0	27	88	3	81	22	20	24	32	1.98
45138169--45138215	19	2.6	18	87	12	69	70	2	4	23	1.16
45141631--45141662	16	2.0	16	93	0	55	25	15	0	59	1.36
45141786--45141884	46	2.2	43	82	8	117	32	25	19	23	1.97
45141893--45142080	51	3.7	51	81	9	249	29	29	17	23	1.97
45141888--45142072	101	1.8	102	91	3	311	30	28	17	23	1.97
45149125--45149220	46	2.1	46	96	1	176	21	15	13	48	1.79
45149144--45149217	24	3.2	24	60	21	57	18	13	13	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45151672--45151712	7	5.9	7	94	0	73	75	0	9	14	1.04
45151671--45151712	21	2.0	21	100	0	84	76	0	9	14	1.02
45153816--45153855	12	3.5	12	90	10	66	7	0	52	40	1.30
45163471--45163532	26	2.4	26	94	0	106	38	14	12	33	1.84
45165885--45165936	15	3.2	15	73	19	50	44	0	1	53	1.11
45166024--45166058	16	2.2	16	89	0	52	57	2	0	40	1.14
45167723--45167815	45	2.1	45	93	0	159	18	27	9	44	1.81
45178214--45178243	11	2.7	11	100	0	60	0	0	10	90	0.47
45179991--45180031	16	2.6	16	96	0	73	9	26	9	53	1.65
45181246--45181279	18	1.9	17	88	5	50	23	0	0	76	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240