genome.fa.s24.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  137  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42655729--42655766	10	3.8	10	83	13	51	28	31	18	21	1.97
42655728--42655765	20	1.9	20	94	0	67	28	34	18	18	1.95
42655729--42655789	20	3.0	20	83	9	63	29	27	14	27	1.95
42655739--42655785	10	4.6	10	80	15	51	31	27	14	25	1.95
42657160--42657220	14	4.6	14	75	20	53	70	3	6	19	1.24
42657149--42657218	11	5.8	11	73	22	52	71	5	5	17	1.25
42657150--42657234	40	2.2	39	83	10	113	71	5	7	15	1.27
42660307--42660344	20	1.9	20	88	0	58	31	34	15	18	1.92
42660308--42660368	20	3.1	19	81	9	52	31	27	13	27	1.94
42660318--42660364	10	4.6	10	80	15	51	34	27	12	25	1.92
42667152--42667203	23	2.3	22	75	21	54	9	23	1	65	1.32
42671714--42671831	55	2.1	55	84	6	159	25	22	13	38	1.90
42672455--42672509	20	2.8	20	94	0	92	27	16	29	27	1.97
42673821--42673866	23	2.1	23	84	8	60	52	13	4	30	1.59
42679196--42679250	15	3.7	15	90	9	87	16	12	7	63	1.50
42679288--42679344	12	4.8	12	91	4	98	19	0	7	73	1.05
42679291--42679347	11	5.0	11	91	8	96	19	0	8	71	1.11
42680338--42680383	23	2.1	23	84	8	60	52	13	4	30	1.59
42683518--42683561	11	4.0	11	90	0	70	72	2	6	18	1.17
42683521--42683568	24	2.0	24	88	4	71	75	4	6	14	1.16
42698499--42698676	27	6.6	27	83	3	205	26	15	28	29	1.96
42698500--42698655	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42698496--42698676	82	2.2	81	83	2	229	27	15	27	29	1.96
42705711--42705754	11	3.9	11	90	3	61	79	4	4	11	1.02
42707976--42708014	19	2.1	19	85	4	53	69	2	25	2	1.14
42707970--42708016	17	2.7	18	81	12	53	70	2	25	2	1.10
42710367--42710431	20	3.3	19	73	16	51	38	16	21	23	1.93
42712207--42712269	33	1.9	33	84	12	85	12	25	6	55	1.60
42712267--42712322	21	2.7	21	72	5	51	8	17	1	71	1.21
42712284--42712371	18	4.7	18	72	6	77	7	20	2	69	1.25
42712266--42712322	14	4.1	14	75	16	57	8	17	1	71	1.19
42712284--42712372	6	14.3	6	70	4	61	7	20	2	69	1.24
42713416--42713486	12	5.7	12	75	14	63	18	7	2	71	1.21
42713405--42713451	24	2.0	24	83	8	60	10	10	6	72	1.28
42713373--42713437	30	2.2	30	83	10	80	4	15	4	75	1.13
42715090--42715154	20	3.3	19	73	16	51	38	16	21	23	1.93
42718264--42718297	15	2.3	15	89	0	50	35	29	32	2	1.73
42724548--42724581	9	3.9	9	88	7	52	70	11	8	8	1.34
42730034--42730073	18	2.2	18	86	4	53	12	27	0	60	1.33
42731134--42731186	14	3.9	14	87	2	81	24	13	0	62	1.31
42731221--42731256	14	2.6	14	90	0	54	13	2	5	77	1.05
42741233--42741280	20	2.4	20	67	0	51	33	18	27	20	1.96
42742663--42742696	18	1.9	18	88	5	52	8	35	2	52	1.47
42742778--42742809	15	2.1	16	94	5	57	6	21	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42743777--42743826	14	3.4	14	77	17	57	18	6	4	72	1.22
42747267--42747315	20	2.5	20	83	3	64	8	22	2	67	1.28
42747273--42747345	20	3.8	20	76	16	59	6	23	1	68	1.21
42755177--42755221	1	45.0	1	86	0	63	93	0	6	0	0.35
42755183--42755222	11	3.7	11	93	6	73	92	0	7	0	0.38
42755183--42755222	21	1.9	21	94	0	71	92	0	7	0	0.38
42755177--42755219	19	2.3	19	95	0	77	93	0	6	0	0.37
42772519--42772692	27	6.6	27	81	5	176	28	28	15	27	1.96
42772519--42772692	53	3.3	53	80	10	194	28	28	15	27	1.96
42780486--42780663	27	6.6	27	80	3	160	28	29	15	26	1.96
42780507--42780662	82	1.9	81	85	3	215	27	29	16	26	1.96
42790086--42790164	30	2.7	29	82	3	86	25	29	10	35	1.88
42796176--42796360	79	2.3	81	82	7	218	25	27	22	24	2.00
42796157--42796360	40	5.1	40	80	8	220	25	27	22	25	2.00
42803423--42803607	79	2.3	81	81	7	209	25	27	22	25	2.00
42803404--42803607	40	5.1	40	78	8	211	25	26	22	25	2.00
42806917--42807053	25	5.5	25	78	0	132	25	22	19	32	1.98
42806926--42807053	50	2.6	50	84	1	168	25	22	20	31	1.98
42817530--42817617	40	2.2	40	88	8	126	10	14	27	47	1.76
42828158--42828205	21	2.3	21	92	0	78	27	22	33	16	1.96
42829189--42829231	22	1.9	22	85	4	59	48	0	25	25	1.51
42829199--42829241	22	2.0	22	90	0	68	46	0	27	25	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42833632--42833756	56	2.2	56	90	2	189	41	7	13	37	1.72
42833750--42833858	23	4.7	23	91	0	164	34	0	20	44	1.51
42833857--42834718	29	30.2	29	88	5	1296	28	0	26	44	1.57
42834083--42834125	23	1.9	22	90	4	68	34	0	25	39	1.56
42834351--42834401	22	2.3	22	100	0	102	25	0	29	45	1.54
42834722--42834779	26	2.2	25	80	14	64	44	10	3	41	1.55
42837039--42837104	10	6.5	10	73	3	60	65	0	1	33	1.02
42837039--42837104	31	2.2	30	94	2	114	65	0	1	33	1.02
42837045--42837086	21	2.0	21	85	0	57	64	0	0	35	0.94
42837138--42837188	22	2.3	21	87	9	75	35	0	33	31	1.58
42837193--42837235	22	2.0	22	100	0	86	37	0	30	32	1.58
42843484--42843544	29	2.1	30	90	3	97	54	6	14	24	1.64
42849995--42850064	35	2.0	35	97	0	131	11	41	8	38	1.72
42851160--42851197	20	1.9	20	94	0	67	26	18	5	50	1.68
42861888--42861956	34	2.0	34	94	0	120	27	24	10	37	1.88
42863568--42863620	23	2.3	23	90	0	88	22	20	24	32	1.98
42879243--42879290	13	3.7	13	88	0	69	31	25	6	37	1.81
42880836--42880964	45	2.9	43	78	10	125	20	13	27	39	1.89
42887414--42887444	14	2.1	15	94	5	55	64	0	6	29	1.18
42888207--42888423	40	5.4	40	80	0	211	23	27	15	34	1.94
42893699--42893738	6	6.7	6	88	0	62	32	0	20	47	1.50
42895124--42895184	3	20.0	3	86	3	77	72	0	26	1	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42895122--42895172	25	2.0	25	100	0	102	68	0	27	3	1.07
42897381--42897417	20	1.9	19	89	10	58	75	2	8	13	1.13
42897569--42897596	3	9.3	3	100	0	56	67	0	0	32	0.91
42899222--42900207	217	4.5	217	93	0	1623	28	24	20	27	1.99
42899345--42900116	44	17.8	44	67	17	264	27	25	20	27	1.99
42912247--42912296	24	2.1	23	92	3	82	62	6	0	32	1.20
42924007--42924060	27	2.0	28	88	3	83	16	12	20	50	1.78
42931493--42931521	14	2.0	15	93	6	51	20	0	27	51	1.47
42935852--42935993	76	1.9	76	88	2	214	42	18	13	26	1.87
42938100--42938154	24	2.3	24	83	0	65	29	20	16	34	1.94
42938192--42938221	16	1.9	16	93	6	53	40	0	10	50	1.36
42950718--42950843	28	4.5	28	92	2	191	32	27	12	26	1.93
42959404--42959428	10	2.5	10	100	0	50	0	20	0	80	0.72
42960570--42960741	56	3.1	56	72	15	192	38	1	6	52	1.39
42960542--42960771	113	2.0	113	97	0	435	38	2	6	52	1.41
42962240--42962588	26	13.8	26	71	11	208	32	6	3	57	1.41
42962235--42962433	51	3.9	49	77	13	165	31	6	3	59	1.37
42962507--42962581	24	3.0	24	80	5	78	37	5	1	56	1.31
42963947--42964036	27	3.4	27	79	11	105	30	7	2	60	1.37
42963947--42964178	26	9.1	25	74	13	145	30	6	3	59	1.42
42966653--42966706	25	2.2	25	86	0	72	16	24	16	42	1.88
42967806--42967835	12	2.6	11	94	5	51	3	16	0	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42969049--42969098	24	2.1	24	84	0	64	30	20	16	34	1.94
42970077--42970126	23	2.1	24	88	3	75	28	8	8	56	1.57
42973103--42973185	22	3.8	22	72	3	69	32	7	18	42	1.77
42977101--42977208	31	3.6	31	72	18	111	25	18	11	44	1.83
42977101--42977265	59	2.8	60	83	7	192	27	16	11	44	1.83
42977130--42977265	60	2.3	60	85	5	177	27	16	12	43	1.84
42979199--42979235	18	2.1	18	94	0	65	62	8	10	18	1.52
42984546--42984653	56	1.9	55	83	7	137	28	14	11	45	1.79
42984738--42984852	27	4.3	27	90	0	149	20	26	27	25	1.99
42984740--42984869	27	4.8	27	85	3	138	21	26	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240