genome.fa.s24.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  207  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62831410--62831494	11	8.4	11	72	17	60	30	3	1	64	1.17
62831431--62831498	18	3.7	18	78	18	77	32	2	1	63	1.18
62831700--62831756	17	3.1	19	78	14	66	31	0	7	61	1.23
62831841--62831872	14	2.3	14	94	0	55	46	6	0	46	1.27
62843999--62844546	44	12.5	44	70	9	330	26	17	25	31	1.97
62843994--62844546	132	4.2	132	93	0	917	27	16	24	30	1.97
62844084--62844576	88	5.6	89	75	7	385	27	17	25	30	1.97
62844628--62844947	46	7.0	46	64	16	157	25	20	24	28	1.99
62844512--62844952	136	3.3	136	95	0	787	26	21	23	28	1.99
62845090--62845178	40	2.2	40	87	6	124	31	17	22	28	1.97
62845114--62845240	40	3.1	40	80	4	155	31	22	18	27	1.97
62845597--62845646	16	3.1	16	75	16	50	24	56	6	14	1.60
62845729--62845794	21	3.0	21	82	8	62	10	1	30	57	1.42
62845720--62845792	23	3.2	23	77	13	71	9	1	28	60	1.37
62846119--62846202	8	9.8	8	74	21	55	28	3	1	66	1.15
62846121--62846202	3	28.3	3	73	22	54	29	3	1	65	1.17
62846408--62846464	17	3.1	19	78	14	66	31	0	7	61	1.23
62846549--62846578	12	2.5	12	94	0	51	46	6	0	46	1.29
62848885--62848927	22	2.0	22	85	0	59	16	13	11	58	1.64
62849336--62849395	31	1.9	31	87	12	88	35	15	5	45	1.68
62854307--62854349	23	2.0	22	86	9	61	41	4	9	44	1.57
62854402--62854440	19	2.1	19	85	9	53	74	2	15	7	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62856348--62856455	44	2.4	44	87	3	144	29	23	13	33	1.93
62857332--62857364	17	2.0	16	94	5	57	3	18	0	78	0.87
62857373--62857415	19	2.3	19	92	8	70	58	0	0	41	0.98
62857379--62857443	24	2.7	24	80	4	78	56	4	0	38	1.20
62857372--62857416	5	9.0	5	83	16	58	57	0	0	42	0.98
62862492--62862599	44	2.4	44	87	3	144	29	23	13	33	1.93
62863475--62863509	9	3.9	9	84	0	52	2	17	0	80	0.84
62863475--62863514	18	2.2	19	90	4	64	2	15	2	80	0.93
62863518--62863590	5	14.6	5	76	20	64	56	4	0	39	1.19
62863519--62863561	19	2.3	19	92	8	70	58	0	0	41	0.98
62863525--62863589	24	2.6	25	80	9	71	58	4	0	36	1.19
62864391--62864493	37	2.7	37	74	6	98	22	20	29	28	1.98
62867531--62867579	21	2.3	22	86	10	75	42	0	0	57	0.99
62869153--62869225	37	1.9	37	83	2	92	35	23	15	26	1.94
62869410--62869456	24	2.0	24	84	16	62	51	17	0	31	1.46
62870130--62870199	25	2.8	24	85	12	79	2	22	2	71	1.13
62870142--62870185	14	3.1	14	81	15	54	0	20	4	75	0.98
62870130--62870201	29	2.5	29	80	13	85	2	22	2	72	1.11
62870222--62870284	5	12.8	5	96	3	119	60	0	0	39	0.97
62871395--62871457	31	2.0	31	100	0	126	25	14	15	44	1.84
62873831--62873886	19	3.0	19	72	12	53	57	1	1	39	1.20
62875778--62875880	25	4.1	25	75	12	95	37	25	12	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62875775--62875876	50	2.0	50	94	0	177	40	24	12	22	1.89
62879408--62879438	7	4.4	7	100	0	62	32	0	0	67	0.91
62884087--62884140	28	1.9	28	84	0	72	51	24	0	24	1.48
62890790--62890829	3	13.3	3	100	0	80	0	32	0	67	0.91
62895018--62895042	7	3.6	7	100	0	50	48	0	40	12	1.40
62895018--62895051	14	2.4	14	90	0	50	44	5	38	11	1.65
62907778--62907822	18	2.6	18	85	3	65	24	15	13	46	1.82
62907888--62908260	139	2.7	140	81	7	434	28	26	10	34	1.90
62911802--62911876	18	4.2	18	91	0	114	26	24	17	32	1.97
62917265--62917636	42	8.5	42	83	9	390	25	18	9	46	1.80
62917288--62917468	94	1.9	94	88	2	274	26	18	6	48	1.73
62917265--62917622	136	2.7	134	84	8	378	24	18	9	47	1.78
62917394--62917636	45	5.7	43	88	5	318	23	17	11	46	1.81
62920065--62920107	22	1.9	22	81	13	52	58	0	2	39	1.11
62923117--62923285	42	4.0	42	88	2	239	25	17	7	50	1.71
62923117--62923285	84	2.0	86	91	3	279	25	17	7	50	1.71
62928736--62928790	19	3.2	18	78	17	62	50	5	0	43	1.25
62929003--62929036	16	2.1	17	94	5	61	32	8	23	35	1.86
62940645--62940674	9	3.2	9	95	4	51	66	3	0	30	1.07
62940645--62940682	18	2.1	19	85	5	51	68	5	0	26	1.11
62945600--62945660	6	10.2	6	96	0	113	32	1	16	49	1.56
62946130--62946169	20	2.0	20	100	0	80	40	15	20	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62946714--62946738	11	2.3	11	100	0	50	56	0	0	44	0.99
62948873--62948912	17	2.4	17	82	0	53	40	0	2	57	1.12
62961047--62961272	42	5.1	42	79	10	263	26	19	7	47	1.74
62961070--62961250	94	1.9	94	88	2	274	26	18	6	48	1.73
62963696--62963738	22	1.9	22	81	13	52	58	0	2	39	1.11
62966731--62966900	42	4.0	42	88	3	241	25	17	7	50	1.70
62966737--62966900	88	1.9	83	90	5	238	24	17	6	51	1.69
62972381--62972419	19	2.1	19	90	0	60	53	5	0	41	1.23
62972635--62972670	17	2.1	18	94	5	65	30	8	22	38	1.83
62976598--62976629	1	32.0	1	100	0	64	100	0	0	0	0.00
63000092--63000335	50	4.7	50	85	4	283	20	29	24	25	1.99
63000091--63000337	100	2.4	105	87	7	362	21	29	24	25	1.99
63000435--63000466	13	2.5	13	94	0	55	56	12	0	31	1.37
63000678--63000735	30	1.9	30	85	0	80	31	22	5	41	1.76
63001302--63001334	16	2.1	16	94	0	57	3	18	0	78	0.87
63001343--63001414	5	14.4	5	75	20	62	55	4	1	38	1.28
63001344--63001386	19	2.3	19	92	8	70	55	0	2	41	1.12
63001350--63001415	24	2.7	24	81	9	71	57	4	1	36	1.28
63001986--63002140	44	3.5	44	80	7	170	30	22	20	26	1.98
63002073--63002405	174	1.9	170	84	4	445	30	19	22	27	1.98
63002517--63002608	44	2.1	44	81	0	103	29	22	22	25	1.99
63003429--63003458	11	2.7	11	100	0	60	10	13	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63004195--63004233	3	13.3	3	83	5	53	28	2	2	66	1.18
63004518--63004557	17	2.4	17	82	0	53	40	0	2	57	1.12
63010560--63010605	16	2.8	17	83	3	58	58	2	2	36	1.22
63018490--63018533	21	2.1	21	87	8	63	65	2	9	22	1.32
63019268--63019309	7	6.1	7	80	5	50	14	50	0	35	1.43
63020575--63020629	25	2.3	23	88	11	92	30	3	16	49	1.63
63020581--63020630	25	2.0	25	100	0	100	32	4	16	48	1.64
63021389--63021510	13	9.7	13	78	9	119	36	4	7	52	1.49
63021387--63021500	35	3.1	37	83	10	144	34	3	8	53	1.49
63021500--63021660	81	2.0	81	92	2	270	39	8	5	45	1.58
63021610--63021634	13	1.9	13	100	0	50	32	8	8	52	1.60
63022716--63022781	26	2.5	26	92	7	116	57	0	3	39	1.14
63029032--63029057	6	4.3	6	100	0	52	0	50	34	15	1.45
63032914--63032939	7	3.7	7	100	0	52	26	0	0	73	0.84
63032947--63033003	29	2.0	29	82	6	71	29	0	1	68	1.00
63034273--63034344	36	2.0	36	94	0	126	31	9	15	43	1.79
63055063--63055117	28	2.0	28	85	0	74	43	10	16	29	1.82
63055280--63055307	6	4.7	6	100	0	56	17	0	0	82	0.68
63057283--63057308	3	8.7	3	100	0	52	69	0	0	30	0.89
63057891--63057924	16	2.1	16	89	10	52	44	8	5	41	1.60
63060318--63060353	3	12.0	3	93	0	63	33	2	0	63	1.08
63060968--63061025	25	2.3	25	93	0	98	39	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63062239--63062304	25	2.6	25	85	0	87	16	31	19	31	1.94
63062321--63062380	25	2.4	24	88	8	66	21	25	16	36	1.94
63074952--63075011	30	2.0	31	83	3	77	18	36	1	43	1.60
63075104--63075142	15	2.5	16	83	8	53	28	25	0	46	1.53
63077667--63077734	19	3.6	18	71	15	57	33	0	2	63	1.10
63077733--63077770	20	2.0	20	89	5	60	42	0	5	52	1.24
63077734--63077777	18	2.4	18	80	20	56	45	0	4	50	1.22
63077747--63077789	19	2.3	18	80	4	50	34	2	4	58	1.32
63078118--63078143	7	3.7	7	100	0	52	46	0	0	53	1.00
63082209--63082255	24	2.0	24	95	0	85	42	0	17	40	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240