genome.fa.s24.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  162  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50808169--50808343	96	1.8	96	81	2	217	24	23	28	24	2.00
50808169--50808363	96	2.0	96	79	3	205	24	24	27	24	2.00
50813182--50813223	20	2.1	20	86	8	59	38	2	11	47	1.53
50823404--50823459	22	2.5	22	77	11	78	14	23	19	42	1.88
50824981--50825044	31	2.1	30	85	2	83	57	1	0	40	1.08
50824979--50825086	33	3.3	33	76	6	103	56	5	1	36	1.33
50826393--50826476	44	1.9	44	97	0	159	47	4	10	36	1.59
50826449--50826482	18	1.9	17	88	5	50	55	5	0	38	1.24
50829352--50829416	14	4.4	14	75	16	60	72	3	21	3	1.12
50835825--50836079	126	2.0	126	99	0	501	27	26	7	38	1.83
50837382--50837420	20	2.0	20	89	0	60	35	5	7	51	1.53
50842146--50842175	12	2.5	12	88	0	51	73	0	10	16	1.09
50847212--50847254	15	2.9	15	82	0	50	25	0	30	44	1.55
50848263--50848300	17	2.2	17	86	9	51	55	2	0	42	1.14
50853554--50853622	16	4.3	16	80	7	77	47	2	15	33	1.61
50853843--50853885	21	2.0	21	86	9	59	62	2	0	34	1.08
50863503--50863566	7	9.1	7	83	13	51	34	0	51	14	1.42
50863530--50863566	14	2.6	14	100	0	74	29	0	56	13	1.37
50873726--50873761	16	2.2	17	90	5	56	36	0	52	11	1.37
50882945--50882996	10	5.3	10	78	19	56	69	1	1	26	1.10
50882943--50882985	18	2.4	18	92	7	70	69	0	0	30	0.88
50882940--50882996	11	6.1	9	78	17	55	66	1	1	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50882940--50883005	28	2.4	25	79	16	69	65	3	1	30	1.17
50892549--50892586	20	1.9	19	85	15	51	55	18	5	21	1.62
50892800--50892838	20	1.9	21	89	5	62	41	7	17	33	1.79
50895363--50895387	13	1.9	13	100	0	50	0	12	0	88	0.53
50896751--50896797	19	2.5	19	75	6	51	46	8	2	42	1.46
50898935--50899002	22	3.0	21	76	6	64	45	17	19	17	1.86
50898994--50899196	32	6.4	32	82	4	196	38	19	20	21	1.94
50898994--50899196	64	3.2	64	87	2	266	38	19	20	21	1.94
50899314--50899395	24	3.4	24	87	0	110	48	24	7	19	1.74
50899326--50899424	24	4.1	24	84	0	108	46	23	7	23	1.76
50899445--50899669	27	8.3	27	76	2	166	22	20	19	37	1.94
50899524--50899720	54	3.6	54	78	0	196	21	18	18	41	1.90
50899441--50899669	81	2.8	81	82	2	264	22	20	19	37	1.95
50902051--50902143	46	2.0	47	81	6	109	38	18	19	23	1.93
50902294--50902357	22	2.9	22	76	6	58	43	17	21	17	1.87
50902318--50902367	22	2.3	22	78	0	55	46	22	14	18	1.84
50902362--50902497	32	4.3	32	80	4	150	38	22	18	20	1.93
50902673--50902726	24	2.2	24	90	0	81	48	22	9	20	1.78
50902798--50903050	27	9.4	26	72	11	138	22	17	19	40	1.91
50902776--50903049	81	3.4	80	78	3	271	22	17	19	40	1.92
50902826--50903050	54	4.2	53	73	11	163	22	17	19	40	1.91
50906380--50906409	15	2.0	15	100	0	60	26	13	20	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50910221--50910250	16	1.9	16	93	6	53	30	0	20	50	1.49
50914995--50915066	27	2.7	27	85	8	94	27	19	13	38	1.90
50916536--50916593	21	2.7	22	73	7	57	50	8	0	41	1.33
50917011--50917063	23	2.4	22	83	3	70	28	0	5	66	1.15
50920013--50920080	34	2.0	35	88	8	104	44	11	7	36	1.69
50923907--50923982	21	3.6	21	71	7	64	7	40	14	36	1.75
50923970--50924108	66	2.1	66	86	5	192	15	28	17	38	1.90
50924003--50924133	66	2.0	66	84	3	174	16	24	18	41	1.90
50929526--50929978	9	52.8	9	66	24	198	32	0	21	45	1.58
50929526--50929656	43	3.1	42	78	12	126	31	1	20	46	1.60
50929542--50929672	59	2.3	56	80	14	151	32	1	20	45	1.60
50929586--50929978	25	15.2	26	79	14	296	32	0	22	44	1.57
50929644--50929671	13	2.2	13	100	0	56	35	0	25	39	1.56
50929635--50929724	22	4.1	22	74	21	82	34	1	21	43	1.60
50929699--50929747	19	2.6	19	83	0	62	32	2	22	42	1.65
50929834--50929874	19	2.2	19	86	8	57	31	0	17	51	1.46
50929898--50929981	43	2.0	43	85	0	114	26	0	25	48	1.51
50932501--50932582	41	2.0	42	83	9	107	34	23	12	30	1.91
50933202--50933283	31	2.6	32	78	3	96	37	41	1	19	1.59
50933554--50933604	7	7.4	7	78	12	61	49	37	1	11	1.51
50933883--50934148	110	2.4	113	83	8	328	29	25	20	23	1.99
50947036--50947096	26	2.3	26	80	5	70	60	3	4	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50947115--50947154	21	1.9	21	84	0	53	55	2	10	32	1.47
50949090--50949359	132	2.0	132	86	1	371	29	20	20	29	1.98
50949276--50950099	128	6.4	128	88	1	1132	24	23	19	33	1.97
50949281--50950090	385	2.1	385	87	0	1174	24	23	19	33	1.97
50951304--50951354	7	7.0	7	85	14	68	13	13	0	72	1.12
50951296--50951343	15	3.5	13	83	13	60	14	12	0	72	1.11
50951313--50951354	22	2.0	20	90	9	66	14	14	0	71	1.15
50951304--50951354	15	3.5	15	86	13	79	13	13	0	72	1.12
50951296--50951354	29	2.0	29	90	6	93	15	13	0	71	1.15
50952194--50952233	6	6.7	6	91	0	53	15	7	10	67	1.41
50954695--50954761	30	2.3	29	82	12	75	26	2	10	59	1.45
50956339--50956363	3	8.3	3	100	0	50	32	0	0	68	0.90
50962264--50962556	44	7.1	43	78	15	316	25	18	26	29	1.98
50962322--50962461	34	3.8	34	75	17	127	24	22	25	28	1.99
50962273--50962556	78	3.5	78	86	5	354	25	19	26	29	1.98
50962264--50962554	122	2.4	121	81	13	332	25	18	26	29	1.98
50962429--50962590	88	1.8	88	85	2	227	27	17	24	29	1.98
50962476--50962763	44	6.6	44	71	8	137	30	18	23	27	1.98
50962429--50962774	88	4.0	88	71	8	217	30	18	23	27	1.98
50962654--50962763	40	2.6	43	82	5	136	30	20	23	26	1.98
50962481--50962853	172	2.1	175	87	4	524	30	19	23	26	1.98
50962852--50962904	20	2.7	20	75	0	52	30	0	1	67	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50963057--50963090	12	2.8	12	90	0	59	50	14	0	35	1.44
50963200--50963244	23	2.0	22	86	4	63	31	2	4	62	1.27
50965004--50965034	16	1.9	16	93	0	53	48	9	6	35	1.62
50965178--50965227	24	2.0	24	84	7	64	48	2	2	48	1.24
50965201--50965256	19	3.1	19	82	12	64	37	0	5	57	1.22
50965201--50965255	18	3.1	18	84	10	60	38	0	5	56	1.23
50971870--50972035	27	6.1	27	75	5	147	38	18	19	23	1.93
50971870--50972035	81	2.0	81	80	6	185	38	18	19	23	1.93
50971872--50972019	54	2.7	54	81	0	188	39	18	18	23	1.92
50972058--50972166	24	4.5	24	84	0	119	24	5	22	46	1.73
50972248--50972300	27	2.0	27	81	7	63	22	26	20	30	1.98
50972370--50972544	32	5.5	32	76	5	174	19	19	22	38	1.94
50972335--50972544	64	3.3	64	78	5	201	20	19	22	38	1.94
50972335--50972547	32	6.7	32	76	5	162	19	20	22	37	1.94
50979484--50979540	24	2.4	24	90	0	87	38	5	8	47	1.57
50983382--50983412	16	1.9	16	93	0	53	25	0	0	74	0.82
50997715--50997741	8	3.4	8	100	0	54	40	0	0	59	0.98
51008255--51008290	17	2.1	17	89	5	54	52	16	22	8	1.70
51009446--51009525	31	2.7	29	83	7	99	51	10	16	22	1.74
51010531--51010580	17	2.9	17	88	11	84	24	22	6	48	1.73
51011003--51011076	36	2.1	35	82	10	87	40	1	6	51	1.37
51011199--51011224	11	2.4	11	100	0	52	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51011922--51011968	22	2.0	24	88	8	71	34	0	10	55	1.35
51014230--51014346	39	3.0	39	83	5	139	35	8	11	44	1.72
51021344--51021372	13	2.1	14	93	6	51	41	0	6	51	1.28
51021973--51022126	78	2.0	78	98	0	299	43	11	9	35	1.73
51026700--51026730	11	2.8	11	95	0	53	77	3	6	12	1.08
51026941--51026974	14	2.5	13	86	9	50	17	23	50	8	1.74
51026949--51026975	14	1.9	14	100	0	54	18	22	51	7	1.70
51027601--51027693	44	2.1	45	85	2	125	27	27	13	30	1.95
51027740--51028094	44	8.0	44	68	8	184	25	23	19	30	1.98
51027678--51028102	132	3.2	132	92	1	683	25	23	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240