genome.fa.s24.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  123  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38309208--38309263	18	3.2	18	82	12	71	28	1	0	69	0.98
38328369--38328470	43	2.4	43	86	0	141	38	25	13	22	1.91
38335525--38335557	7	4.7	7	96	0	57	48	24	0	27	1.51
38335525--38335564	21	1.9	21	84	0	53	52	22	0	25	1.47
38335547--38335667	64	1.9	64	84	3	163	44	32	0	22	1.59
38335611--38335705	7	13.4	7	76	2	82	47	28	1	23	1.58
38335611--38335705	14	6.7	14	79	2	91	47	28	1	23	1.58
38336129--38336231	40	2.6	40	87	0	143	28	24	18	29	1.98
38336277--38336398	40	3.0	41	84	4	142	27	22	22	28	1.99
38336008--38336376	155	2.4	154	87	2	526	28	21	19	30	1.98
38339279--38339401	27	4.8	26	71	10	110	23	14	17	43	1.86
38339280--38339401	53	2.4	49	81	8	147	22	14	18	44	1.86
38350287--38350974	225	3.0	230	87	6	1052	37	16	22	23	1.94
38358578--38358705	49	2.6	50	74	2	123	25	21	28	25	1.99
38361081--38361121	20	2.2	18	91	8	64	17	0	4	78	0.93
38367877--38367941	32	2.0	32	100	0	130	41	18	6	33	1.75
38370184--38370322	44	3.2	44	64	8	102	27	30	23	18	1.98
38370179--38370362	88	2.1	88	89	0	278	27	27	24	20	1.99
38370364--38370527	44	3.8	43	73	5	150	25	23	26	24	2.00
38370296--38370546	87	2.9	87	84	2	326	26	24	24	24	2.00
38370337--38370480	44	3.3	44	71	5	139	29	20	25	24	1.99
38370494--38371219	44	16.7	44	70	11	324	28	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38370494--38371382	217	4.1	217	90	0	1348	28	20	22	28	1.98
38370615--38371382	44	17.6	44	69	14	287	29	19	22	28	1.98
38373424--38373614	36	5.0	36	82	12	229	36	13	19	29	1.91
38373388--38373614	82	2.9	81	86	7	310	36	12	20	30	1.90
38375674--38375721	16	2.9	16	82	17	55	25	4	6	64	1.35
38383711--38383735	12	2.1	12	100	0	50	48	20	24	8	1.76
38397616--38397898	30	9.3	30	73	10	182	40	14	24	21	1.90
38397643--38397911	92	2.9	90	80	8	278	40	14	23	21	1.91
38397616--38397898	122	2.3	122	90	2	446	40	14	24	21	1.90
38400601--38401218	47	13.1	47	94	1	1013	32	8	29	29	1.88
38400601--38401218	143	4.4	143	93	1	989	32	8	29	29	1.88
38400601--38401218	190	3.3	189	95	0	1060	32	8	29	29	1.88
38401337--38401415	37	2.1	37	88	4	115	25	18	30	25	1.98
38403269--38403371	43	2.4	43	96	3	190	21	14	37	26	1.92
38403353--38403426	29	2.6	29	89	4	105	25	16	32	25	1.96
38403816--38404011	40	4.9	40	86	1	268	27	21	26	25	2.00
38403775--38404011	80	3.0	80	83	2	298	27	21	26	24	1.99
38406498--38406649	27	5.6	27	90	2	223	26	14	28	30	1.95
38406498--38406649	55	2.8	55	89	2	234	26	14	28	30	1.95
38406498--38406649	82	1.9	82	91	0	250	26	14	28	30	1.95
38411007--38411576	47	12.1	47	95	0	960	31	8	30	28	1.88
38411695--38411773	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38417626--38417678	26	2.0	27	82	10	65	58	0	11	30	1.33
38417972--38418032	30	2.0	31	81	9	72	47	0	18	34	1.49
38418383--38418637	30	8.4	30	72	10	146	38	13	23	23	1.91
38418470--38418640	91	1.9	91	80	2	200	38	15	24	22	1.92
38418383--38418639	121	2.1	121	82	4	304	38	13	24	23	1.91
38441720--38441745	11	2.4	11	100	0	52	84	7	0	7	0.77
38445295--38445353	22	2.7	22	83	0	73	8	5	52	33	1.54
38455113--38455284	54	3.2	53	80	4	184	40	17	18	23	1.91
38455139--38455307	81	2.1	81	83	6	209	39	19	19	21	1.93
38455088--38455307	27	8.1	27	72	8	153	40	18	17	23	1.91
38455303--38455400	48	2.0	48	84	4	124	23	11	21	43	1.84
38455328--38455438	24	4.6	24	78	8	100	21	6	23	48	1.73
38455330--38455426	48	2.0	47	84	11	126	21	6	22	49	1.71
38455338--38455438	48	2.1	47	82	10	116	19	5	23	50	1.70
38455613--38455735	32	3.8	32	79	4	140	19	17	22	40	1.91
38457658--38457879	110	2.0	111	95	0	401	32	22	19	25	1.97
38461230--38461468	50	4.6	50	81	4	217	23	26	20	28	1.99
38461227--38461410	100	1.8	100	83	0	242	22	27	22	28	1.99
38461810--38461873	30	2.1	30	85	0	83	32	23	9	34	1.87
38464282--38464395	37	3.1	36	78	6	104	42	28	14	15	1.86
38476822--38476898	26	3.0	26	78	0	100	37	22	20	19	1.94
38503163--38503384	50	4.3	50	88	3	309	26	22	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38509492--38509727	50	4.7	50	77	3	217	28	23	25	22	1.99
38509906--38509963	20	3.3	17	77	15	55	55	5	24	15	1.61
38516275--38516351	22	3.2	22	65	19	55	37	25	12	23	1.91
38523591--38523641	22	2.3	22	83	6	59	70	13	9	5	1.32
38523765--38523811	25	2.0	23	91	8	76	72	0	21	6	1.07
38523767--38523821	25	2.3	23	82	14	67	74	0	21	3	0.97
38524145--38524188	18	2.4	18	88	7	63	72	0	27	0	0.85
38524122--38524181	23	2.6	23	78	7	59	68	1	30	0	0.99
38526147--38526178	12	2.7	12	90	0	55	28	6	15	50	1.68
38533166--38533701	75	7.0	74	80	8	533	31	17	19	31	1.95
38533166--38533701	151	3.5	149	82	6	569	31	17	19	31	1.95
38534027--38534097	30	2.4	29	88	9	101	33	15	2	47	1.60
38534051--38534171	28	4.2	29	78	15	83	32	17	4	45	1.70
38534611--38534674	28	2.4	28	82	10	82	71	0	21	6	1.07
38534867--38534912	20	2.1	23	84	11	62	60	0	39	0	0.97
38535017--38535074	9	6.5	8	79	15	53	74	0	24	1	0.92
38535026--38535074	18	2.8	17	87	6	62	75	0	22	2	0.90
38536434--38536595	74	2.2	74	78	2	173	39	25	14	19	1.90
38537518--38537560	21	2.0	22	86	4	61	18	6	4	69	1.29
38539224--38539371	33	4.4	32	71	21	99	30	28	20	20	1.98
38539247--38539578	103	3.2	103	87	0	477	32	26	19	20	1.97
38539529--38539580	27	1.9	27	96	0	95	28	30	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38545333--38545968	47	13.3	47	90	3	945	32	8	29	29	1.87
38545333--38545968	96	6.7	94	91	3	945	32	8	29	29	1.87
38548192--38548499	40	7.7	40	89	1	449	24	22	27	24	2.00
38548711--38548819	57	1.9	58	90	1	175	24	19	27	28	1.98
38552331--38552523	47	3.9	49	82	9	241	32	8	31	28	1.86
38552331--38552468	53	2.7	51	88	8	203	32	7	28	31	1.84
38554742--38555049	40	7.7	40	90	1	458	24	22	28	24	2.00
38555261--38555369	57	1.9	57	88	1	164	23	19	28	28	1.98
38558835--38559332	47	10.4	49	88	5	711	33	8	29	29	1.86
38561555--38561862	40	7.7	40	89	3	451	24	22	28	25	1.99
38562074--38562182	57	1.9	57	88	1	164	23	19	28	28	1.98
38565649--38566149	47	10.4	49	89	3	729	32	8	29	29	1.87
38565649--38566149	96	5.2	96	89	3	785	32	8	29	29	1.87
38571540--38571842	102	3.0	102	86	1	410	32	26	20	20	1.97
38576683--38576721	20	2.0	20	94	0	69	15	23	2	58	1.49
38576923--38577164	50	4.8	48	75	8	155	23	28	20	26	1.99
38580338--38580558	41	5.4	41	92	1	372	20	28	21	29	1.98
38582252--38582310	28	2.0	31	83	9	79	50	5	0	44	1.24
38582814--38582860	24	2.0	24	100	0	94	25	25	23	25	2.00
38585875--38585925	13	3.9	13	94	0	84	23	11	25	39	1.89
38586513--38586556	22	2.0	21	91	4	70	40	4	13	40	1.65
38590312--38590369	28	2.1	28	86	0	80	25	24	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38590397--38590525	58	2.2	57	98	1	249	34	42	13	9	1.76
38590763--38590929	27	6.2	26	80	8	140	19	17	20	42	1.89
38590757--38590929	80	2.1	81	88	5	253	19	17	19	42	1.89
38590757--38590929	54	3.2	53	84	5	197	19	17	19	42	1.89
38595671--38595912	50	4.7	50	76	4	164	23	26	21	28	1.99
38601550--38601675	43	3.0	42	80	4	130	29	14	26	29	1.95
38605150--38605210	25	2.4	26	83	5	72	68	1	6	22	1.21
38607162--38607191	15	2.0	15	100	0	60	20	6	20	53	1.67
38609659--38609705	21	2.4	21	79	10	55	40	0	4	55	1.19
38626095--38626238	27	5.3	26	84	9	173	40	20	19	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240