genome.fa.s24.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  192  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58728715--58728740	12	2.2	12	100	0	52	46	7	15	30	1.74
58729924--58730039	42	2.8	42	77	10	130	35	19	15	29	1.93
58733505--58733557	6	8.8	6	84	15	74	84	0	15	0	0.61
58733504--58733558	25	2.2	24	90	9	85	85	0	14	0	0.60
58734210--58734250	15	2.7	15	88	7	57	34	36	9	19	1.85
58740509--58740538	12	2.4	13	94	5	53	90	6	3	0	0.56
58741654--58741714	9	6.8	9	96	0	104	22	9	29	37	1.87
58741874--58741898	12	2.1	12	100	0	50	16	24	36	24	1.94
58742968--58743097	44	3.0	44	95	0	233	29	17	24	28	1.97
58743304--58743574	50	5.5	50	68	11	173	32	19	19	27	1.96
58743274--58743557	95	2.9	97	80	3	329	31	19	20	28	1.97
58743497--58743599	46	2.1	48	89	7	156	33	23	17	25	1.96
58743967--58744008	15	2.8	15	85	0	57	38	35	7	19	1.79
58744187--58744223	20	1.9	20	88	5	58	64	8	16	10	1.47
58745020--58745066	11	4.3	11	86	7	69	29	0	0	70	0.88
58745355--58745450	28	3.4	27	71	14	79	30	9	2	58	1.41
58746886--58747308	142	3.0	142	83	2	508	30	19	21	28	1.97
58747358--58747461	44	2.4	44	87	6	149	29	17	20	32	1.95
58749067--58749091	11	2.3	11	100	0	50	32	16	0	52	1.44
58755862--58756013	40	3.8	40	74	4	119	30	20	20	28	1.97
58755842--58756015	80	2.2	80	79	3	181	33	20	20	25	1.97
58756053--58756160	40	2.7	40	79	2	128	30	21	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58755922--58756320	145	2.7	145	81	2	453	33	18	22	25	1.97
58756401--58756445	14	3.2	14	80	0	54	24	0	22	53	1.46
58756480--58756523	14	3.1	14	78	12	54	18	0	27	54	1.44
58756794--58756915	7	17.4	7	76	3	111	18	0	33	46	1.55
58756748--58756915	21	8.1	20	72	9	106	20	1	30	47	1.58
58756782--58756911	48	2.7	46	77	9	134	20	0	32	46	1.56
58756831--58756913	36	2.4	34	84	8	96	21	1	31	45	1.60
58759272--58759360	9	9.9	9	72	9	74	42	16	2	38	1.61
58759394--58759434	21	2.0	21	85	9	57	46	14	0	39	1.45
58761273--58761382	43	2.5	42	89	5	175	25	18	25	30	1.98
58763876--58763925	19	2.6	19	84	12	66	66	2	2	30	1.14
58764084--58764125	22	1.9	22	85	0	57	61	2	9	26	1.39
58764670--58764761	39	2.4	39	87	3	141	35	2	1	60	1.16
58764732--58764771	21	1.9	21	89	0	62	37	2	0	60	1.11
58764731--58764778	21	2.2	20	79	13	51	33	2	4	60	1.27
58764871--58764992	63	1.9	64	83	1	156	35	7	4	52	1.51
58767237--58767277	21	1.9	22	85	5	57	24	9	21	43	1.83
58767466--58767608	52	2.9	52	88	6	208	24	8	21	45	1.79
58767502--58767799	116	2.6	116	97	0	560	26	9	20	42	1.83
58772433--58772626	92	2.1	92	87	5	277	45	4	4	46	1.41
58772569--58772616	26	1.9	25	84	16	64	45	0	2	52	1.12
58772666--58772710	18	2.4	18	92	3	72	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58772689--58772774	15	5.7	15	69	28	67	45	0	1	53	1.07
58772671--58772771	18	6.5	16	71	25	83	46	0	0	52	1.07
58772672--58772906	59	3.9	59	76	12	246	45	1	3	49	1.28
58772855--58772889	18	2.0	17	88	5	52	45	0	0	54	0.99
58772855--58772909	15	3.4	16	80	16	53	47	0	1	50	1.11
58773054--58773144	45	2.0	44	85	2	119	37	28	4	29	1.77
58773125--58773160	16	2.2	16	100	0	72	38	36	0	25	1.56
58776408--58776527	63	1.9	63	84	1	161	35	6	5	53	1.49
58779252--58779301	15	3.4	15	68	15	50	48	26	16	10	1.77
58779238--58779302	29	2.2	29	97	0	121	46	26	15	12	1.81
58780047--58780156	43	2.6	43	86	2	150	29	31	16	22	1.96
58782696--58782730	6	5.8	6	87	12	54	82	0	0	17	0.66
58782981--58783006	11	2.4	11	100	0	52	84	7	7	0	0.77
58784579--58784626	24	2.0	24	95	0	87	22	16	39	20	1.92
58788289--58788593	107	2.9	107	89	4	451	35	11	12	40	1.79
58789444--58789606	89	1.8	89	89	2	256	42	30	1	24	1.65
58789434--58789636	89	2.4	84	81	8	223	43	31	1	23	1.63
58793554--58793581	14	2.0	14	100	0	56	35	14	14	35	1.86
58797587--58797639	24	2.3	25	75	15	60	52	7	5	33	1.53
58798568--58798637	31	2.3	31	85	5	88	48	17	18	15	1.81
58802259--58802301	21	2.0	21	86	8	61	60	2	0	37	1.10
58808391--58808457	26	2.6	24	81	6	71	40	20	20	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58808391--58808464	25	2.9	26	82	6	80	39	21	20	18	1.93
58809247--58809319	25	2.9	25	83	4	85	38	21	20	19	1.94
58807769--58809838	856	2.4	856	96	0	3804	29	21	17	30	1.96
58810030--58810101	26	2.8	25	83	8	83	19	23	19	37	1.94
58813133--58813165	6	5.7	6	85	7	50	81	0	3	15	0.80
58813128--58813162	12	3.0	12	87	8	54	77	0	8	14	0.99
58820450--58820489	20	2.0	20	85	0	53	42	20	25	12	1.86
58822359--58822398	21	2.0	21	90	5	64	50	5	12	32	1.62
58829284--58829340	24	2.4	24	88	5	80	49	8	5	36	1.57
58830338--58830365	13	2.2	13	100	0	56	21	0	14	64	1.29
58837854--58838015	58	2.8	58	80	7	195	52	4	1	41	1.31
58844502--58844637	66	2.1	66	91	0	218	40	17	26	15	1.89
58844984--58845121	42	3.3	43	93	2	226	26	18	26	28	1.98
58847670--58847701	8	4.0	8	91	0	55	0	0	9	90	0.45
58847670--58847701	12	2.6	13	85	14	50	0	0	9	90	0.45
58858488--58858524	17	2.1	18	90	5	58	43	5	5	45	1.49
58858832--58858875	20	2.1	22	83	8	56	18	4	13	63	1.46
58863841--58863884	10	3.5	13	79	20	58	72	0	11	15	1.11
58865140--58866465	100	13.3	99	86	1	1675	33	21	20	24	1.97
58865140--58866465	50	26.5	50	71	4	877	33	21	20	24	1.97
58868110--58868143	17	2.1	16	88	5	50	44	5	8	41	1.60
58871883--58871915	10	3.1	11	86	8	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58872491--58872569	29	2.7	28	80	11	88	46	13	12	26	1.79
58872519--58872580	29	2.1	29	81	0	70	56	11	9	22	1.63
58873236--58873432	43	4.6	42	79	6	166	22	16	22	38	1.93
58874561--58874603	21	2.0	21	82	8	52	11	34	25	27	1.91
58878020--58878108	46	1.9	46	86	0	124	39	19	7	33	1.80
58892555--58892803	50	4.8	50	84	4	275	20	28	24	26	1.99
58892554--58892803	100	2.4	104	87	6	348	21	28	24	26	1.99
58892898--58892929	13	2.5	13	94	0	55	56	12	0	31	1.37
58893138--58893225	40	2.2	41	91	2	142	0	28	9	62	1.25
58893248--58893313	3	25.0	3	75	25	69	62	0	0	37	0.96
58893242--58893313	8	9.0	8	76	23	64	61	0	0	38	0.96
58893251--58893316	5	13.8	5	84	15	95	62	0	0	37	0.96
58893242--58893316	13	5.8	13	81	18	95	61	0	0	38	0.96
58896435--58896491	16	3.8	14	76	19	53	71	0	1	26	0.95
58896416--58896475	33	1.9	30	83	10	75	65	1	1	31	1.13
58896461--58896491	8	4.0	8	95	4	55	77	0	0	22	0.77
58909456--58909510	27	2.0	27	100	0	110	41	7	7	43	1.60
58912519--58912552	18	1.9	17	88	5	50	70	2	2	23	1.15
58912585--58912617	12	2.8	12	90	0	57	66	0	3	30	1.06
58912578--58912630	12	4.3	12	80	2	52	67	1	5	24	1.22
58914028--58914421	44	9.1	44	66	12	143	26	23	19	30	1.98
58914028--58914438	173	2.4	173	89	1	592	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58914115--58914397	85	3.3	85	66	12	216	27	23	19	29	1.98
58914472--58914742	45	5.8	45	82	6	335	29	23	18	28	1.98
58914481--58914760	96	3.0	95	86	3	363	28	24	18	28	1.98
58919334--58919392	30	2.0	30	96	0	109	47	27	10	15	1.77
58925878--58925937	27	2.2	27	93	0	102	40	13	18	28	1.88
58927090--58927123	18	1.9	17	88	5	50	70	2	2	23	1.15
58927156--58927188	12	2.8	12	90	0	57	66	0	3	30	1.06
58927149--58927200	12	4.3	12	80	4	52	67	1	5	25	1.23
58930766--58930929	30	5.5	30	93	2	278	42	19	8	29	1.81
58930770--58930929	59	2.7	59	96	0	284	42	20	8	28	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240