genome.fa.s24.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  120  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37280999--37281030	16	2.0	16	93	0	55	25	15	0	59	1.36
37281160--37281249	46	2.0	44	85	8	119	32	25	17	24	1.97
37287481--37287619	35	4.0	35	83	3	181	16	12	32	38	1.87
37301517--37301621	33	3.2	33	87	0	147	17	9	33	40	1.82
37307125--37307182	30	1.9	30	86	6	82	39	6	24	29	1.81
37307585--37307697	50	2.3	50	85	0	163	26	24	28	20	1.99
37307972--37308020	20	2.5	20	78	15	57	55	6	24	14	1.62
37309180--37309226	15	3.5	15	70	27	50	42	8	12	36	1.74
37309177--37309226	25	2.0	25	100	0	100	40	8	16	36	1.77
37312422--37312456	6	5.8	6	96	0	61	48	2	31	17	1.61
37312625--37312683	26	2.3	26	90	0	91	40	8	16	33	1.79
37317747--37317814	26	2.7	26	79	2	75	25	22	27	25	1.99
37321407--37321600	50	3.9	50	77	2	185	26	22	29	21	1.99
37333276--37333310	17	2.1	16	89	5	52	22	8	5	62	1.45
37333411--37333442	14	2.3	14	94	0	55	31	0	15	53	1.43
37350683--37350866	40	4.6	40	83	6	205	23	21	27	27	1.99
37350683--37350863	80	2.3	81	84	9	230	23	21	27	27	1.99
37353995--37354137	29	4.8	29	82	8	162	38	14	25	21	1.92
37354006--37354133	62	2.1	58	84	8	159	39	14	24	21	1.90
37358298--37358409	22	5.4	22	71	12	101	33	28	18	18	1.95
37358298--37358427	60	2.2	60	87	0	179	33	28	19	18	1.95
37362697--37362749	27	2.0	27	84	0	70	35	24	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37362814--37362871	24	2.5	23	80	8	64	20	5	24	50	1.69
37362935--37362994	27	2.3	27	81	16	72	20	25	21	33	1.97
37363017--37363250	32	7.4	32	78	3	213	20	20	20	38	1.94
37363044--37363250	95	2.2	94	81	2	225	21	20	20	38	1.94
37365978--37366031	22	2.5	22	90	0	81	37	33	16	12	1.87
37369804--37369940	38	3.6	38	80	10	102	46	12	9	31	1.73
37369830--37369940	38	2.9	38	84	2	132	45	11	9	33	1.72
37373614--37373752	27	5.2	26	76	10	127	40	22	17	20	1.91
37373621--37373754	54	2.5	54	82	4	164	39	22	17	20	1.92
37375246--37375294	22	2.2	22	85	0	62	4	16	2	77	1.01
37376841--37376871	9	3.4	9	100	0	62	19	12	9	58	1.62
37380251--37380307	29	2.0	29	82	6	71	29	21	0	49	1.50
37381179--37381222	19	2.3	19	88	7	63	56	0	22	20	1.42
37382127--37382180	18	3.1	18	84	10	67	33	18	1	46	1.60
37382151--37382186	18	2.0	18	94	0	63	30	22	0	47	1.52
37387432--37387609	27	6.6	27	85	3	214	26	14	28	30	1.95
37387433--37387588	82	1.9	81	89	3	242	26	14	28	30	1.95
37387429--37387609	82	2.2	81	84	2	238	27	14	27	30	1.95
37394281--37394458	27	6.6	27	85	3	214	26	14	28	30	1.95
37394282--37394437	82	1.9	81	89	3	242	26	14	28	30	1.95
37394278--37394458	82	2.2	81	84	2	238	27	14	27	30	1.95
37403612--37403693	25	3.3	25	87	0	119	30	23	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37412047--37412932	49	18.4	49	87	8	1236	33	7	28	30	1.85
37412100--37412219	61	2.0	61	98	0	231	33	6	26	33	1.83
37412047--37412932	96	9.2	97	88	7	1246	33	7	28	30	1.85
37412342--37412405	18	3.3	18	69	23	58	35	3	26	34	1.72
37417126--37417321	51	3.9	51	80	4	218	23	17	28	30	1.97
37417318--37417412	45	2.1	45	84	3	129	28	16	22	32	1.96
37425652--37425740	35	2.5	35	85	0	115	26	17	13	41	1.87
37426440--37426514	22	3.4	22	75	0	69	34	16	14	34	1.89
37427584--37427616	15	2.1	16	88	5	50	51	0	42	6	1.26
37431487--37431555	28	2.5	28	78	0	75	43	31	1	23	1.63
37431547--37431621	26	2.8	27	76	8	73	40	33	5	21	1.76
37434335--37434511	43	4.1	43	77	7	171	25	15	25	33	1.95
37434433--37434532	42	2.4	42	80	10	114	29	16	24	31	1.96
37436912--37436971	32	1.9	32	89	3	95	45	5	16	33	1.69
37437608--37437659	22	2.4	22	83	0	68	50	19	13	17	1.78
37437651--37437821	32	5.4	32	85	6	213	40	19	18	21	1.92
37437868--37437929	27	2.3	26	79	15	74	32	19	25	22	1.97
37438003--37438045	11	3.7	11	76	11	50	53	27	4	13	1.60
37438007--37438103	24	4.0	24	82	5	108	45	22	7	24	1.78
37438120--37438190	27	2.7	26	86	6	99	18	22	22	36	1.95
37438139--37438213	27	2.8	27	85	4	89	20	20	17	42	1.89
37440355--37440563	97	2.2	97	92	0	346	45	3	16	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37444279--37444316	17	2.4	17	91	8	62	55	0	13	31	1.38
37444868--37444902	13	2.8	13	86	4	54	34	2	5	57	1.37
37447470--37447555	45	1.9	45	85	0	118	12	25	1	60	1.40
37447532--37447605	29	2.5	29	84	8	87	6	24	1	67	1.22
37448483--37448518	13	2.8	13	91	0	54	33	8	2	55	1.44
37456443--37457505	524	2.0	524	99	0	2085	35	12	20	31	1.90
37462351--37462509	79	2.0	79	95	2	284	20	13	10	55	1.66
37462802--37462833	15	2.1	15	94	0	55	0	21	0	78	0.76
37469855--37469886	15	2.1	15	94	0	55	0	21	0	78	0.76
37473404--37473522	36	3.3	35	81	9	123	14	13	32	39	1.85
37475669--37475722	20	2.7	20	82	0	63	24	20	18	37	1.94
37475669--37475742	30	2.5	30	86	8	98	21	20	18	39	1.93
37475669--37475733	20	3.2	20	71	16	53	23	21	16	38	1.93
37477343--37477368	12	2.2	12	100	0	52	76	7	0	15	0.99
37478431--37478568	12	11.6	12	69	18	65	69	2	18	9	1.26
37478453--37478571	6	19.7	6	70	7	71	71	2	18	7	1.21
37478439--37478571	18	7.4	18	74	12	69	69	2	18	9	1.25
37480267--37480325	20	3.0	20	74	18	59	23	18	15	42	1.88
37483216--37483282	29	2.3	29	85	10	84	40	7	26	25	1.82
37483267--37483400	30	4.5	30	81	7	157	40	11	26	21	1.88
37483297--37483430	58	2.3	59	84	7	182	38	14	25	21	1.91
37483216--37483431	88	2.5	88	80	8	253	39	12	25	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37484186--37484215	15	2.0	15	100	0	60	40	20	20	20	1.92
37485825--37485902	29	2.7	28	82	11	95	24	14	30	30	1.94
37485855--37486182	174	1.9	174	96	0	602	29	14	24	31	1.95
37493881--37493958	29	2.7	28	84	11	104	25	14	30	29	1.94
37493911--37494238	174	1.9	174	96	0	611	30	14	24	30	1.95
37501947--37502024	29	2.7	28	84	11	104	25	14	30	29	1.94
37501977--37502301	173	1.9	173	95	1	589	30	14	24	30	1.95
37507781--37507850	29	2.4	29	87	0	104	24	27	11	37	1.89
37510006--37510090	30	2.8	30	72	13	84	38	15	21	24	1.92
37525431--37525464	16	2.1	17	88	5	52	8	2	11	76	1.12
37531042--37531186	50	2.9	50	78	4	139	27	20	28	23	1.99
37536995--37537217	27	8.3	25	74	13	133	44	18	14	22	1.86
37536995--37537192	54	3.7	54	86	0	261	44	18	13	23	1.85
37537000--37537202	108	1.9	108	86	4	293	44	19	12	23	1.84
37537047--37537217	54	3.2	54	77	10	179	45	18	14	22	1.85
37541690--37541921	27	8.7	26	78	4	158	43	16	16	24	1.87
37541715--37541924	54	3.9	53	82	1	233	42	17	16	23	1.88
37541716--37541924	81	2.6	80	84	5	251	42	17	15	23	1.88
37548585--37548632	18	2.6	19	87	6	64	33	8	0	58	1.28
37548866--37548956	30	3.1	28	77	13	94	34	2	4	59	1.30
37548903--37548983	31	2.5	33	82	10	85	32	3	3	60	1.32
37549330--37549369	4	9.8	4	89	5	62	25	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37554224--37554290	26	2.6	26	81	11	75	20	17	4	56	1.58
37555120--37555152	14	2.3	15	89	5	50	30	12	30	27	1.92
37556439--37557148	88	8.2	88	77	8	607	27	25	23	23	2.00
37556536--37556850	165	1.9	166	88	1	472	26	27	23	22	2.00
37556448--37557149	253	2.7	253	81	5	759	27	25	23	22	2.00
37556822--37557169	175	2.0	175	88	1	518	28	25	23	22	2.00
37558814--37558877	24	2.7	24	71	20	62	35	3	3	57	1.30
37562580--37562606	11	2.5	11	100	0	54	29	0	25	44	1.54
37574398--37574426	14	2.1	14	100	0	58	27	6	13	51	1.66
37575473--37575513	19	2.0	20	86	9	57	24	14	14	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240