genome.fa.s24.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  132  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40938723--40938781	22	2.7	22	75	15	59	55	3	1	38	1.26
40941456--40941560	33	3.2	32	81	5	111	54	0	43	1	1.11
40941425--40941562	66	2.1	66	82	2	161	50	0	46	2	1.18
40941501--40941559	20	3.3	20	73	26	69	54	0	45	0	0.99
40941571--40941784	75	2.9	76	89	2	335	35	9	43	10	1.72
40945145--40945214	32	2.2	32	97	0	131	28	18	12	40	1.88
40947750--40947805	21	2.8	19	77	15	60	69	5	0	25	1.09
40948640--40948693	21	2.6	21	90	0	81	22	24	18	35	1.96
40950417--40950520	41	2.5	41	84	0	145	31	18	30	19	1.95
40963324--40963369	24	1.9	24	90	0	74	19	13	10	56	1.66
40965372--40965462	45	2.0	45	97	0	173	27	20	21	29	1.98
40967480--40967507	14	2.0	14	100	0	56	64	0	7	28	1.20
40969993--40970082	12	7.5	12	72	13	51	55	4	6	33	1.46
40970039--40970081	3	14.0	3	81	13	52	62	0	2	34	1.08
40970043--40970081	14	2.8	14	96	0	69	61	0	2	35	1.10
40970039--40970081	17	2.5	17	85	10	61	62	0	2	34	1.08
40979974--40980004	14	2.2	14	94	0	53	77	9	0	12	0.99
40980110--40980184	19	3.8	19	89	6	123	38	10	14	36	1.81
40980409--40980453	23	2.0	23	81	0	54	22	0	15	62	1.33
40980918--40980961	23	2.0	22	90	4	70	34	6	2	56	1.38
40998767--40998797	16	2.0	15	93	6	53	38	6	12	41	1.69
41000765--41000808	21	2.1	21	86	0	61	36	25	11	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41008067--41008123	26	2.2	26	87	0	78	40	5	19	35	1.74
41016440--41016472	16	1.9	18	88	11	52	36	0	3	60	1.12
41028656--41028721	34	1.9	34	93	0	114	46	27	3	22	1.66
41034000--41034177	27	6.6	27	81	3	160	28	28	15	27	1.96
41034000--41034176	54	3.3	55	80	7	191	28	28	15	27	1.96
41041658--41041770	46	2.4	46	91	1	172	46	9	10	33	1.71
41048319--41048430	46	2.4	47	86	5	142	48	9	10	31	1.71
41054400--41054456	29	2.0	29	89	6	89	24	1	5	68	1.20
41055283--41055320	13	2.8	13	85	14	51	81	0	10	7	0.87
41057708--41057769	30	2.1	29	82	11	72	50	3	0	46	1.17
41057939--41057988	13	3.9	12	79	7	55	38	26	2	34	1.68
41058210--41058255	20	2.4	19	82	13	58	32	2	0	65	1.05
41058224--41058248	11	2.3	11	100	0	50	24	0	0	76	0.80
41058735--41058779	23	2.0	23	90	0	72	26	0	2	71	0.98
41058720--41058781	8	7.8	8	73	7	54	29	0	1	69	0.98
41071039--41071125	34	2.6	33	80	10	104	21	10	31	36	1.87
41072053--41072115	30	2.1	31	90	3	101	12	14	20	52	1.74
41081908--41081963	20	2.8	21	81	8	62	41	0	1	57	1.09
41088597--41088634	13	2.9	13	77	14	51	34	23	7	34	1.84
41089672--41089753	10	8.4	9	71	14	56	34	2	4	58	1.32
41089656--41089772	39	2.9	39	80	7	103	36	5	3	53	1.42
41089686--41089761	10	7.7	10	72	7	57	35	2	3	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41089684--41089761	40	2.0	39	84	2	102	35	2	3	57	1.30
41089822--41089863	20	2.1	20	86	8	59	19	2	7	71	1.20
41099962--41100028	5	12.8	5	95	4	107	79	0	2	17	0.86
41112497--41112544	21	2.2	23	82	14	57	10	16	0	72	1.10
41112497--41112544	23	2.0	24	84	11	64	10	16	0	72	1.10
41118452--41118637	41	4.5	41	87	2	241	29	23	18	28	1.98
41118750--41118880	61	2.1	61	81	2	156	40	16	8	35	1.78
41123965--41123989	12	2.1	12	100	0	50	76	0	8	16	1.02
41125187--41125457	54	5.0	54	82	0	281	26	19	31	21	1.98
41127823--41127877	27	2.1	26	89	3	83	25	21	23	29	1.99
41130944--41130998	26	2.1	26	96	0	101	41	16	5	36	1.71
41133834--41133910	40	1.9	41	86	7	113	23	11	25	38	1.89
41134688--41134735	23	2.1	23	100	0	96	33	14	14	37	1.87
41134753--41134837	24	3.5	24	88	0	125	28	15	17	38	1.90
41159846--41159965	25	4.8	25	75	4	98	38	22	14	25	1.91
41159846--41159972	50	2.5	50	81	5	141	38	21	14	25	1.92
41162587--41162624	19	2.0	20	89	5	60	39	2	7	50	1.46
41162625--41162691	17	3.7	18	68	11	57	29	1	4	64	1.22
41162807--41162860	16	3.3	17	71	10	58	55	5	11	27	1.57
41164131--41164200	19	3.6	19	75	23	65	34	1	4	60	1.25
41164236--41164273	18	2.1	18	85	9	51	44	0	5	50	1.24
41184619--41184655	15	2.5	15	91	4	58	40	10	21	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41184646--41184680	18	1.9	18	88	0	52	31	8	20	40	1.82
41184959--41184996	20	2.0	20	89	5	60	23	21	0	55	1.44
41189817--41190076	129	2.0	128	85	5	346	31	8	11	48	1.69
41190331--41190390	27	2.2	28	82	11	79	58	10	6	25	1.55
41191724--41191761	10	3.7	10	86	13	51	15	0	13	71	1.16
41193766--41193865	43	2.3	43	100	0	200	33	7	16	44	1.74
41193792--41193860	20	3.3	20	67	25	61	33	5	14	46	1.68
41195120--41195177	29	1.9	29	86	6	80	44	6	20	27	1.77
41195649--41195979	102	3.3	102	86	1	389	29	15	24	30	1.95
41195649--41195979	51	6.5	50	78	5	306	29	15	24	30	1.95
41206311--41206503	51	3.8	51	79	4	203	26	17	26	29	1.97
41206722--41206794	36	2.0	36	100	0	146	36	13	19	30	1.90
41213280--41213375	31	3.1	31	93	3	165	31	8	13	46	1.73
41213916--41213970	20	2.8	20	83	5	76	78	16	5	0	0.93
41213922--41213981	20	2.8	20	76	16	59	75	16	8	0	1.04
41213943--41214011	11	6.4	11	73	8	61	75	11	11	1	1.12
41213967--41214012	20	2.3	20	92	0	74	69	10	17	2	1.27
41213979--41214032	28	1.9	28	92	7	92	72	9	14	3	1.24
41217063--41217157	31	3.1	31	90	0	154	32	7	12	47	1.69
41217610--41217795	51	3.7	51	81	3	180	25	17	27	29	1.98
41221426--41221483	28	2.1	28	80	3	64	25	20	12	41	1.87
41231417--41231470	3	18.0	3	100	0	108	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41232236--41232285	19	2.6	19	78	18	50	52	8	4	36	1.50
41236521--41237083	23	25.2	22	76	15	396	27	0	25	46	1.59
41236557--41236722	21	7.8	21	77	14	126	26	1	30	41	1.63
41236532--41237083	44	12.4	43	77	15	284	27	0	25	46	1.58
41236521--41237083	67	8.4	66	81	7	504	27	0	25	46	1.59
41236726--41237052	112	2.9	111	86	5	446	26	0	24	48	1.54
41237135--41237389	25	10.9	25	68	21	178	45	14	0	39	1.48
41237108--41237399	69	4.3	69	94	1	500	47	14	0	38	1.47
41238489--41238514	7	3.7	7	100	0	52	57	15	0	26	1.38
41239707--41239746	11	3.6	11	93	0	62	55	0	27	17	1.43
41241092--41241436	25	13.6	25	70	16	158	58	4	6	30	1.43
41241072--41241180	52	2.1	54	84	3	141	60	3	6	29	1.39
41241131--41241277	48	2.9	50	74	7	138	57	6	5	29	1.47
41241344--41241432	27	3.4	27	83	9	112	61	2	5	30	1.31
41241335--41241436	52	2.0	52	84	3	134	62	1	5	29	1.29
41242804--41243147	26	13.6	25	71	14	172	59	4	5	30	1.39
41242784--41242969	50	3.7	52	76	8	154	61	4	5	28	1.37
41245123--41245159	19	1.9	19	94	0	65	51	2	0	45	1.15
41245847--41245882	13	2.8	13	88	12	56	75	0	25	0	0.81
41249258--41249282	12	2.1	12	100	0	50	56	16	8	20	1.65
41257382--41257469	41	2.1	42	80	4	106	22	10	19	47	1.79
41263942--41263980	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41266440--41266535	48	2.0	48	93	0	165	38	14	15	31	1.88
41268985--41269117	50	2.7	50	85	0	185	19	29	23	27	1.98
41276510--41276696	50	3.8	50	76	4	130	25	28	18	27	1.98
41276609--41276748	56	2.7	50	82	6	145	24	30	19	26	1.98
41283485--41283551	30	2.2	30	100	0	134	16	25	0	58	1.38
41284159--41284202	18	2.3	20	81	11	58	25	0	6	68	1.14
41298258--41298370	54	2.1	54	85	3	147	18	26	27	27	1.98
41298339--41298394	24	2.3	24	90	0	85	14	25	35	25	1.93
41305239--41305279	2	20.5	2	100	0	82	51	0	48	0	1.00
41307838--41308169	173	1.9	172	85	4	454	38	9	9	42	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240