genome.fa.s24.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  173  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53722342--53722390	3	16.0	3	87	4	71	63	2	4	30	1.24
53728709--53728923	113	1.9	111	86	1	304	40	15	14	29	1.86
53729333--53729362	6	5.0	6	100	0	60	16	0	0	83	0.65
53730278--53730317	14	2.9	14	84	0	53	42	17	7	32	1.77
53732767--53732793	9	3.0	9	100	0	54	11	0	0	88	0.50
53735094--53735211	43	2.8	41	78	8	114	21	24	28	25	1.99
53735218--53735491	43	6.3	43	72	6	214	31	29	16	22	1.96
53735197--53735471	86	3.2	86	83	2	327	27	29	16	26	1.97
53735357--53735516	86	1.9	86	83	0	212	28	28	16	26	1.97
53735837--53735949	21	5.4	21	81	0	127	5	40	18	35	1.73
53735837--53735970	42	3.2	42	76	0	133	5	39	18	36	1.73
53735941--53736106	66	2.5	66	84	3	201	13	28	18	40	1.88
53738533--53738734	9	24.2	9	69	15	96	37	2	15	44	1.62
53738538--53738657	16	7.9	16	66	19	78	35	2	16	45	1.61
53738552--53738688	25	5.6	25	74	6	118	37	2	15	44	1.61
53738631--53738757	43	2.9	43	77	12	109	38	1	12	47	1.51
53738726--53738760	13	2.7	13	95	0	61	40	0	8	51	1.33
53738647--53738809	34	4.8	33	82	7	184	39	1	11	47	1.48
53738873--53738913	13	2.8	15	85	14	59	34	0	19	46	1.50
53738872--53738950	16	5.0	16	76	13	74	34	1	16	48	1.55
53741446--53741497	27	1.9	27	88	0	77	50	9	0	40	1.35
53741565--53741601	10	3.7	10	92	0	65	43	13	0	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53743922--53744159	81	2.9	82	83	3	300	37	23	22	16	1.94
53743920--53744202	82	3.5	81	82	4	320	37	22	23	16	1.94
53743885--53744202	41	7.8	41	75	9	226	36	22	24	16	1.94
53749327--53749388	26	2.4	26	97	0	115	41	1	0	56	1.09
53749432--53749490	27	2.2	27	90	0	100	25	23	33	16	1.96
53749772--53749814	19	2.3	18	85	14	61	37	2	16	44	1.60
53750626--53750664	17	2.2	18	95	4	71	33	0	48	17	1.48
53755704--53755842	28	5.1	28	67	23	75	0	31	0	68	0.90
53755758--53755903	4	37.0	4	75	19	87	0	31	0	68	0.90
53755705--53755912	78	2.7	79	86	9	277	0	32	0	67	0.91
53755947--53755998	27	1.9	27	92	0	86	13	30	25	30	1.94
53756062--53756121	26	2.3	27	88	2	95	46	0	8	45	1.33
53759514--53759833	161	2.0	160	90	0	496	40	8	22	29	1.82
53775243--53775268	13	2.0	13	100	0	52	23	0	0	76	0.78
53775874--53775992	57	2.1	55	93	4	204	36	21	7	35	1.82
53780169--53780206	16	2.4	16	90	0	58	31	0	34	34	1.58
53780185--53780282	44	2.2	44	85	5	126	35	5	24	34	1.78
53780440--53780474	18	2.0	17	88	5	52	54	0	0	45	0.99
53780327--53780643	157	2.0	157	97	0	598	44	3	5	47	1.41
53780577--53780618	15	2.7	16	82	14	52	52	2	0	45	1.13
53780586--53780627	15	2.9	15	82	10	52	52	0	0	47	1.00
53780575--53780872	120	2.5	121	93	3	503	50	5	2	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53780696--53780747	15	3.6	15	80	12	56	53	1	0	44	1.11
53780913--53780966	15	3.9	15	72	16	53	51	3	0	44	1.19
53780888--53781089	87	2.3	88	87	6	273	46	3	3	45	1.40
53789967--53790125	59	2.8	57	78	10	146	31	20	20	27	1.97
53794237--53794365	43	3.0	43	79	4	134	32	27	17	23	1.96
53801011--53801060	26	1.9	26	100	0	100	38	24	30	8	1.84
53803872--53803929	29	2.0	29	86	3	80	48	15	6	29	1.71
53804130--53804184	21	2.6	21	91	0	92	21	9	40	29	1.84
53808076--53808116	16	2.5	16	84	4	55	9	56	2	31	1.45
53808064--53808256	60	3.3	58	80	11	230	12	49	4	33	1.60
53808154--53808253	28	3.4	28	69	15	85	10	52	6	32	1.59
53810772--53810834	21	3.1	20	77	8	65	53	14	26	4	1.60
53812703--53813056	42	8.4	42	88	4	466	31	21	22	25	1.98
53812724--53813055	85	3.9	85	88	5	349	31	21	22	25	1.98
53813043--53813160	44	2.7	44	95	0	209	23	22	17	35	1.95
53813548--53813587	20	2.0	20	85	0	53	2	50	15	32	1.57
53819010--53819148	9	15.9	9	76	16	107	29	2	20	47	1.62
53819010--53819113	25	4.1	25	80	4	127	28	2	22	46	1.66
53819010--53819148	25	5.3	26	75	12	117	29	2	20	47	1.62
53819081--53819117	16	2.3	16	90	0	56	24	8	16	51	1.71
53819098--53819148	19	2.7	19	88	11	86	31	0	17	50	1.46
53819133--53819294	12	13.8	12	70	13	88	29	1	18	51	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53819430--53819467	19	2.0	19	94	0	67	55	0	0	44	0.99
53819485--53819565	9	9.0	9	67	15	51	38	1	18	41	1.58
53819522--53819570	18	2.9	17	85	8	64	42	2	18	36	1.62
53819578--53819669	34	2.7	34	89	3	132	61	3	4	30	1.31
53820747--53820831	37	2.3	37	93	0	152	51	17	17	12	1.76
53822589--53822637	7	6.9	7	79	4	53	42	32	0	24	1.55
53822588--53822637	14	3.5	14	79	15	66	42	34	0	24	1.55
53823129--53823291	88	1.9	88	93	0	281	32	20	18	28	1.96
53825589--53825720	41	3.2	41	84	1	167	23	21	25	29	1.99
53825611--53825723	40	2.8	39	81	6	127	23	21	27	28	1.99
53826136--53826165	14	2.1	15	93	6	53	30	0	33	36	1.58
53826314--53826356	6	7.0	6	80	15	52	16	4	48	30	1.66
53826832--53826865	16	2.1	16	88	5	50	70	2	2	23	1.15
53831055--53831151	43	2.3	43	85	0	140	18	18	35	27	1.95
53832012--53832518	114	4.5	113	91	6	773	26	15	14	44	1.84
53840108--53840132	13	1.9	13	100	0	50	20	40	8	32	1.81
53841614--53841647	12	2.8	12	90	0	59	0	23	17	58	1.38
53841682--53841706	10	2.5	10	100	0	50	20	8	28	44	1.79
53844805--53844908	49	2.1	49	87	0	145	30	8	9	50	1.65
53846355--53846550	57	3.4	54	69	17	135	41	1	3	54	1.25
53846267--53846482	109	2.0	106	84	12	282	42	0	4	52	1.28
53846474--53846507	17	2.0	17	100	0	68	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53846474--53846521	15	3.0	15	81	9	51	41	2	0	56	1.11
53846654--53846759	44	2.5	41	79	18	135	35	31	3	29	1.75
53846671--53846761	46	2.0	46	93	4	159	38	30	4	26	1.76
53846741--53846777	16	2.3	16	100	0	74	21	35	5	37	1.77
53857483--53857552	22	3.1	22	79	4	86	42	11	22	22	1.85
53860414--53860453	14	2.9	14	84	0	53	32	7	17	42	1.77
53860437--53860476	20	2.0	20	90	0	62	25	10	15	50	1.74
53860422--53860488	34	1.9	35	87	3	100	29	8	14	46	1.76
53865724--53865748	5	5.0	5	100	0	50	80	0	0	20	0.72
53868033--53868228	51	3.9	50	80	6	225	30	28	17	23	1.97
53868037--53868219	101	1.8	102	90	3	298	30	26	18	24	1.98
53868031--53868253	101	2.2	102	80	4	254	29	28	17	25	1.97
53876761--53876953	96	2.0	96	92	2	325	30	7	27	34	1.85
53877344--53877554	101	2.1	101	84	0	269	50	10	9	28	1.69
53878625--53878683	27	2.2	27	81	6	75	37	11	25	25	1.90
53883929--53884315	195	2.0	193	84	5	512	41	16	9	33	1.79
53884823--53884895	38	2.0	34	84	10	92	53	1	0	45	1.09
53885925--53885963	18	2.2	18	90	4	62	25	0	0	74	0.82
53897178--53897318	41	3.4	41	80	7	126	22	29	17	30	1.97
53897219--53897351	41	3.2	41	86	4	162	23	29	19	27	1.98
53902052--53902181	65	2.0	65	96	0	242	33	12	8	46	1.72
53909088--53909126	20	1.9	21	84	5	53	33	15	48	2	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53911890--53912032	71	2.0	71	100	0	286	26	12	26	34	1.92
53912376--53912412	7	5.4	7	93	3	58	24	0	10	64	1.25
53917255--53917304	20	2.5	19	81	15	57	40	6	4	50	1.46
53927121--53927297	50	3.4	50	83	7	203	22	28	20	28	1.98
53939629--53939662	15	2.2	16	94	5	61	0	0	20	79	0.73
53940409--53940462	2	27.0	2	100	0	108	0	50	0	50	1.00
53943350--53943519	81	2.1	81	96	0	313	42	15	21	21	1.89
53943634--53943688	24	2.3	24	100	0	110	45	7	25	21	1.77
53953574--53953621	25	1.9	25	87	8	71	22	20	16	39	1.92
53959639--53959835	99	2.0	99	97	0	376	34	27	11	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240