genome.fa.s24.2.7.7.80.10.50.1000.230.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  230  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69345546--69345588	14	3.1	14	86	0	59	37	39	0	23	1.55
69345610--69345648	15	2.7	14	84	7	51	46	25	0	28	1.53
69345883--69345927	14	3.1	14	87	3	63	46	20	2	31	1.62
69345888--69345933	14	3.3	14	87	0	65	50	21	0	28	1.49
69345861--69345961	53	1.9	53	85	0	139	47	21	1	28	1.62
69345860--69345972	53	2.1	53	81	0	136	46	23	1	27	1.62
69346372--69346588	114	1.9	114	83	1	283	25	24	19	30	1.98
69346623--69347102	114	4.2	115	84	3	506	26	22	18	32	1.97
69346623--69347102	229	2.1	228	80	6	508	26	22	18	32	1.97
69355049--69355078	15	2.0	15	93	0	51	53	13	30	3	1.56
69355977--69356009	11	2.8	12	90	4	50	42	12	9	36	1.74
69356910--69356949	20	2.0	21	85	5	55	30	2	15	52	1.55
69357063--69357265	69	2.8	70	83	5	246	22	18	27	31	1.97
69363030--69363073	23	1.9	23	90	0	70	22	15	13	47	1.81
69363062--69363100	20	2.0	20	84	0	51	33	2	10	53	1.48
69370261--69370389	18	7.2	18	86	0	177	35	16	20	27	1.94
69371162--69371200	19	2.1	19	100	0	78	28	5	0	66	1.12
69376077--69376116	10	3.9	10	96	3	71	57	0	10	32	1.32
69376239--69376280	22	2.0	21	90	9	68	40	7	4	47	1.52
69381710--69381739	6	5.0	6	100	0	60	33	16	0	50	1.46
69389675--69389715	16	2.5	16	88	4	55	41	7	9	41	1.66
69389955--69389999	23	2.0	22	83	12	56	51	0	6	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69403476--69403516	21	2.0	21	81	18	50	31	19	26	21	1.97
69407242--69407273	7	4.7	7	96	3	57	37	0	0	62	0.95
69407234--69407273	20	2.0	20	85	9	55	37	0	0	62	0.95
69407234--69407273	13	3.0	13	89	7	62	37	0	0	62	0.95
69410423--69410473	18	2.9	18	80	11	52	37	1	0	60	1.08
69418682--69419047	153	2.4	153	89	1	556	25	20	16	37	1.93
69418682--69419100	153	2.7	152	85	3	457	25	21	15	37	1.93
69423370--69423571	100	2.0	100	99	0	395	33	31	11	22	1.91
69427541--69427612	37	1.9	37	97	0	135	38	22	6	31	1.81
69429135--69429176	20	2.1	20	100	0	84	33	23	4	38	1.76
69430879--69430977	43	2.3	43	87	6	148	41	15	15	28	1.87
69433543--69433587	3	15.0	3	81	9	56	0	37	0	62	0.96
69433559--69433596	18	2.1	18	90	0	58	5	42	0	52	1.24
69445581--69445615	16	2.2	16	89	0	52	40	20	14	25	1.90
69445512--69445718	103	2.0	100	88	4	308	42	14	16	25	1.87
69447062--69447110	20	2.5	20	80	3	55	53	20	4	22	1.63
69449697--69449729	10	3.5	10	84	16	52	30	0	18	51	1.46
69455102--69455141	14	2.9	14	88	0	62	65	15	5	15	1.44
69455150--69455203	22	2.4	24	84	9	69	68	7	9	14	1.38
69458106--69458229	41	3.0	41	80	1	133	28	27	20	24	1.99
69459245--69459347	9	11.4	9	86	4	136	23	9	24	42	1.84
69461987--69462015	3	9.7	3	100	0	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69467004--69467031	14	2.0	14	100	0	56	28	14	14	42	1.84
69467169--69467278	51	2.2	51	83	3	132	44	9	14	31	1.76
69470276--69470875	190	3.0	194	91	7	920	30	14	17	37	1.90
69474483--69474514	2	16.0	2	93	0	55	46	0	3	50	1.17
69475107--69475147	16	2.6	17	85	14	54	24	0	9	65	1.22
69475639--69475681	21	2.0	21	81	0	50	53	0	0	46	1.00
69502801--69502830	14	2.2	14	94	5	53	0	3	6	90	0.56
69504073--69504115	18	2.4	19	84	7	54	48	0	6	44	1.29
69509677--69509715	18	2.2	18	90	0	60	41	41	0	17	1.50
69509865--69509939	37	2.0	37	97	0	141	33	6	16	44	1.73
69509874--69509930	17	3.2	17	67	13	51	31	3	15	49	1.62
69509938--69509977	9	4.4	9	90	0	62	30	10	17	42	1.82
69517901--69517962	24	2.7	22	80	9	79	32	3	4	59	1.34
69517901--69518022	23	5.2	23	70	9	86	32	8	3	55	1.45
69518091--69518149	24	2.4	23	77	22	59	35	1	3	59	1.24
69519437--69519466	14	2.1	14	93	0	51	46	6	6	40	1.56
69524643--69524717	24	3.0	24	80	9	69	29	2	5	62	1.31
69524675--69524725	24	2.2	23	85	3	66	31	5	3	58	1.40
69528926--69528962	17	2.2	17	90	0	56	48	0	0	51	1.00
69528930--69528979	24	2.0	25	88	3	75	52	0	2	46	1.12
69528960--69529007	20	2.4	20	86	13	64	35	0	8	56	1.30
69530987--69531021	12	2.8	12	91	4	52	60	0	8	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69532529--69533094	44	12.8	42	67	20	146	28	21	18	31	1.97
69532463--69532734	124	2.2	125	85	4	359	31	23	16	28	1.96
69532584--69533107	189	2.9	174	81	12	625	28	20	18	31	1.97
69538233--69538303	29	2.4	30	85	2	99	32	18	5	43	1.73
69538841--69538866	11	2.4	11	100	0	52	23	46	30	0	1.53
69538913--69538973	3	19.3	3	83	12	54	70	0	29	0	0.88
69538913--69538977	9	6.4	10	79	20	73	70	0	29	0	0.87
69538927--69538989	4	16.5	4	78	15	62	76	0	23	0	0.79
69538927--69538989	7	8.2	8	76	15	62	76	0	23	0	0.79
69539165--69539203	19	2.1	19	90	9	62	28	41	28	2	1.69
69539275--69539309	7	4.9	7	86	6	52	82	0	17	0	0.66
69539272--69539311	15	2.7	15	88	0	62	80	0	20	0	0.72
69539437--69539477	8	5.5	8	80	13	52	24	0	2	73	0.96
69539852--69540260	18	22.8	18	73	12	299	31	12	11	44	1.79
69539864--69540129	71	3.7	70	84	6	286	31	13	11	42	1.80
69539864--69540267	89	4.5	88	77	10	342	31	12	11	43	1.79
69539860--69540260	71	5.6	68	76	14	271	30	12	11	44	1.79
69540228--69540268	19	2.2	19	90	0	64	41	9	9	39	1.71
69540809--69540923	44	2.6	42	82	9	133	24	20	28	26	1.99
69543664--69543707	21	2.1	21	95	0	79	15	9	40	34	1.79
69547605--69547726	61	2.0	61	90	0	190	30	23	22	23	1.99
69548953--69549068	46	2.6	46	90	4	184	27	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69560933--69561040	15	7.2	15	67	12	78	42	7	24	25	1.80
69560926--69561040	30	3.8	30	95	0	194	43	6	24	25	1.79
69565435--69565512	15	5.2	15	70	11	70	43	7	23	25	1.80
69565428--69565512	30	2.8	30	96	0	152	44	7	23	24	1.78
69566321--69566354	16	2.1	16	88	0	50	32	14	11	41	1.82
69570478--69570525	13	3.6	13	76	13	53	37	0	0	62	0.95
69570943--69570982	20	1.9	20	85	10	53	62	2	2	32	1.22
69576407--69576441	3	11.7	3	100	0	70	31	0	0	68	0.90
69587653--69587825	88	2.0	88	85	4	233	34	13	9	42	1.78
69590256--69590333	30	2.5	31	81	10	88	48	2	1	47	1.23
69592467--69592496	15	2.1	15	93	6	53	43	13	0	43	1.43
69600442--69600482	20	2.0	20	100	0	82	9	14	19	56	1.66
69600448--69600491	20	2.2	20	84	4	54	18	11	18	52	1.74
69602742--69603360	81	7.6	81	83	2	704	30	23	18	27	1.97
69602736--69603360	162	3.9	162	88	1	831	30	23	18	27	1.97
69602742--69603367	243	2.6	242	83	1	788	30	23	18	27	1.98
69607137--69607179	19	2.3	19	100	0	86	62	4	0	32	1.15
69608207--69608283	29	2.6	29	83	4	91	49	14	12	23	1.78
69609110--69609318	81	2.5	81	90	2	319	30	22	20	26	1.98
69609293--69609358	33	2.0	33	100	0	132	30	36	18	15	1.91
69609212--69609430	114	1.9	114	94	0	384	28	27	20	23	1.99
69609326--69609854	81	6.5	80	90	2	799	29	25	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69609150--69609513	195	1.9	195	92	1	622	29	26	19	25	1.98
69609326--69609854	243	2.2	242	95	0	950	29	25	19	25	1.99
69610732--69610760	5	5.8	5	100	0	58	82	0	17	0	0.66
69612417--69612678	81	3.2	81	77	6	235	32	23	14	28	1.95
69612417--69612774	161	2.3	157	78	6	393	31	23	15	29	1.95
69617676--69617714	20	2.0	20	100	0	78	46	5	20	28	1.72
69621330--69621387	29	1.9	31	82	6	75	32	10	15	41	1.81
69623695--69623740	14	3.4	14	84	3	58	30	2	10	56	1.46
69625092--69625286	98	2.0	98	92	0	327	36	23	9	30	1.87
69626574--69626631	22	2.6	22	84	7	73	43	17	3	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240