genome.fa.s24.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  94  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29541068--29541113	19	2.3	19	85	7	56	71	2	2	23	1.08
29541076--29541114	19	2.0	19	90	5	60	69	0	2	28	1.02
29545415--29545466	26	2.0	27	84	3	70	32	1	3	61	1.25
29545491--29545526	18	2.0	18	88	0	54	36	0	2	61	1.11
29545465--29545540	30	2.5	29	81	12	82	32	2	3	60	1.29
29545897--29545962	31	2.2	30	89	10	100	54	0	1	43	1.09
29561988--29562300	109	2.9	110	90	2	481	34	18	15	31	1.92
29564489--29564576	40	2.2	40	93	4	151	23	22	21	31	1.98
29564548--29565082	131	4.1	130	72	11	364	27	22	20	29	1.98
29564568--29565259	218	3.2	218	95	0	1240	27	22	20	30	1.98
29564508--29565257	87	8.7	87	71	9	421	27	21	20	30	1.98
29576843--29577157	109	2.9	110	89	4	433	36	18	14	30	1.91
29593605--29593635	5	6.2	5	96	0	53	35	41	0	22	1.54
29598551--29598643	45	2.1	45	97	0	177	25	22	8	43	1.82
29601627--29601903	123	2.2	125	96	2	506	29	16	20	33	1.95
29608565--29608700	73	1.9	73	82	3	175	23	25	25	25	2.00
29609693--29609727	15	2.4	15	90	4	54	48	0	8	42	1.33
29612482--29612622	69	2.0	69	93	0	237	31	21	19	27	1.97
29613744--29613810	4	16.5	4	73	22	52	22	4	0	73	1.01
29613744--29613785	18	2.3	18	88	8	59	21	4	0	73	1.01
29613738--29613810	17	4.4	16	77	17	69	21	4	0	73	0.99
29613738--29613810	22	3.3	22	74	18	71	21	4	0	73	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29615265--29615379	25	4.6	25	71	14	85	33	20	26	19	1.96
29622453--29622546	25	3.8	24	72	13	84	35	20	23	21	1.96
29622822--29622938	59	2.0	61	96	3	220	24	22	11	41	1.86
29626806--29626866	24	2.5	24	84	5	79	45	0	36	18	1.49
29627556--29627613	29	2.0	29	100	0	116	34	13	10	41	1.79
29632899--29632951	24	2.2	24	90	3	81	52	1	0	45	1.11
29632899--29632960	24	2.8	22	81	11	65	54	1	0	43	1.09
29636083--29636159	25	3.0	25	84	9	84	38	1	1	58	1.15
29666377--29666417	19	2.1	20	86	4	57	26	14	14	43	1.84
29668278--29668337	26	2.3	26	88	0	84	36	10	6	46	1.64
29679568--29679635	3	23.0	3	81	3	66	60	1	5	32	1.30
29679577--29679633	21	2.7	21	86	0	78	57	1	7	33	1.36
29680531--29680560	4	7.8	4	92	7	53	76	0	0	23	0.78
29681251--29681365	51	2.3	51	80	3	124	26	23	15	33	1.95
29681501--29682100	44	13.6	44	65	10	186	26	25	19	29	1.98
29681343--29682103	132	5.8	132	88	1	1015	26	24	19	29	1.99
29682682--29682706	12	2.1	12	100	0	50	36	8	32	24	1.84
29690305--29690339	12	3.0	12	91	4	54	31	2	0	65	1.07
29690459--29690521	30	2.1	30	90	0	99	57	14	1	26	1.47
29701108--29701141	17	2.0	17	94	0	59	32	5	20	41	1.76
29703260--29703375	39	3.0	38	92	2	196	50	27	3	18	1.63
29703511--29703573	17	3.5	17	69	12	54	34	3	12	49	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29703508--29703582	37	2.0	37	94	0	132	36	4	14	45	1.64
29704463--29704503	19	2.1	20	90	4	66	58	2	0	39	1.11
29710505--29710695	96	2.0	96	81	2	222	30	22	17	29	1.96
29710851--29710895	23	2.0	23	86	8	65	35	20	22	22	1.96
29715652--29715861	104	2.0	106	95	1	379	40	13	13	31	1.84
29717827--29717884	25	2.3	25	82	5	73	31	24	13	31	1.94
29718618--29718844	118	1.9	117	88	2	339	29	23	8	38	1.84
29721980--29722031	27	1.9	27	88	0	77	30	3	11	53	1.54
29722742--29722775	15	2.3	15	90	10	52	32	5	35	26	1.81
29729891--29729990	39	2.6	39	81	0	101	35	4	17	44	1.67
29731571--29731633	32	2.0	30	85	11	83	22	23	33	20	1.97
29736975--29737017	21	2.0	21	82	8	52	11	25	13	48	1.77
29741155--29741287	70	1.9	67	86	4	185	31	11	14	42	1.81
29742161--29742210	20	2.5	20	80	0	64	16	26	24	34	1.95
29748262--29748290	14	2.1	14	100	0	58	27	58	0	13	1.36
29750612--29751058	61	7.4	61	70	12	341	43	2	4	48	1.38
29750578--29751081	120	4.2	120	97	0	920	44	2	4	48	1.35
29751300--29751332	16	2.1	16	100	0	66	21	36	6	36	1.78
29751702--29751733	13	2.4	14	90	10	50	53	6	0	40	1.26
29752904--29752939	14	2.6	14	87	12	56	72	2	0	25	0.98
29754669--29754717	23	2.1	24	88	3	73	57	0	0	42	0.99
29754769--29754806	11	3.3	12	82	10	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29762199--29762280	31	2.6	31	84	0	101	41	12	13	32	1.81
29762205--29762295	31	2.9	31	80	0	83	41	13	13	31	1.82
29762827--29762864	15	2.6	15	87	4	51	31	18	0	50	1.47
29763188--29763485	113	2.6	112	80	8	336	26	21	23	27	1.99
29763976--29764073	21	4.5	21	71	12	72	17	1	41	39	1.56
29763976--29764073	7	13.4	7	72	16	65	17	1	41	39	1.56
29764346--29764431	38	2.2	39	87	4	120	20	2	39	37	1.66
29766630--29766709	31	2.6	31	87	0	115	21	16	18	43	1.88
29769372--29769442	21	3.4	21	88	0	106	30	18	46	4	1.68
29769759--29769877	42	2.8	42	87	2	159	32	22	22	21	1.98
29774477--29774502	12	2.2	12	100	0	52	0	7	15	76	0.99
29776003--29776053	18	2.9	19	80	13	65	60	0	11	27	1.31
29776020--29776064	18	2.4	19	85	7	65	62	0	11	26	1.29
29776235--29776288	25	2.2	24	86	3	72	57	0	7	35	1.27
29776271--29776322	18	2.9	18	83	8	54	65	1	9	23	1.32
29776333--29776429	5	17.6	5	68	17	50	55	2	17	24	1.52
29776333--29776534	28	7.5	28	71	13	104	60	1	14	23	1.43
29776267--29776383	17	7.4	16	73	17	68	59	0	13	25	1.40
29776405--29776539	16	8.0	16	74	17	96	65	0	12	21	1.31
29776489--29776534	5	8.6	5	84	13	56	60	0	17	21	1.35
29776447--29776503	20	2.8	20	82	10	64	66	0	8	24	1.20
29776497--29776531	11	3.0	12	83	8	54	54	0	22	22	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29777099--29777133	18	2.0	17	88	5	52	54	0	0	45	0.99
29776986--29777302	157	2.0	157	95	0	571	44	2	4	47	1.38
29777236--29777277	15	2.7	16	82	14	52	52	2	0	45	1.13
29777245--29777286	15	2.9	15	82	10	52	52	0	0	47	1.00
29777234--29777531	120	2.5	121	92	4	496	49	5	2	42	1.38
29777355--29777406	15	3.6	15	80	12	56	53	1	0	44	1.11
29777572--29777619	26	1.9	25	84	16	64	52	2	0	45	1.12
29777527--29777755	92	2.5	92	83	8	236	47	3	3	44	1.38
29780820--29780895	33	2.3	33	97	0	143	35	5	15	43	1.70
29780938--29781019	37	2.2	37	93	0	137	36	8	14	40	1.77
29784169--29784194	5	5.2	5	100	0	52	80	0	19	0	0.71
29784773--29784823	16	3.1	16	85	2	66	23	15	0	60	1.35
29784828--29784922	17	4.9	19	79	17	67	21	10	1	67	1.27
29784842--29784900	16	3.6	16	84	11	75	20	10	1	67	1.28
29784847--29784900	17	3.1	17	84	12	74	18	11	1	68	1.28
29784869--29784935	22	2.9	22	78	13	64	22	10	1	65	1.31
29784827--29784936	40	2.8	39	72	25	97	22	10	0	66	1.27
29784879--29784951	23	3.2	22	81	16	78	21	12	1	64	1.35
29787130--29787483	89	4.0	87	76	14	321	57	12	5	24	1.56
29803938--29804375	44	10.0	44	65	17	203	31	20	23	23	1.98
29803938--29804470	132	4.0	132	93	0	895	31	20	24	23	1.98
29805156--29805197	13	3.2	13	83	13	50	7	7	4	80	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29805161--29805198	20	1.9	20	88	0	58	5	10	2	81	0.94
29806250--29806295	22	2.1	22	91	0	74	10	21	26	41	1.86
29806558--29806788	87	2.7	86	89	2	302	29	32	17	20	1.96
29806578--29806829	130	1.9	129	83	7	323	29	30	16	23	1.96
29806558--29806829	43	6.3	43	79	3	287	29	31	16	22	1.96
29806558--29806823	86	3.1	86	87	2	372	28	31	17	22	1.96
29807135--29807233	21	4.7	21	83	0	108	6	41	18	34	1.75
29807254--29807383	65	2.0	65	84	4	172	12	26	20	41	1.87
29812790--29812920	9	15.9	9	69	16	70	35	3	16	44	1.64
29812795--29812914	16	7.9	16	66	19	78	35	2	16	45	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240