genome.fa.s24.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  153  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48281013--48281037	3	8.3	3	100	0	50	36	0	0	64	0.94
48281419--48281795	125	3.0	124	90	1	560	29	15	22	32	1.95
48284832--48285131	37	8.1	37	95	0	537	46	3	10	40	1.53
48285136--48285162	6	4.5	6	100	0	54	14	0	48	37	1.45
48285142--48285852	29	24.6	29	87	5	960	24	0	29	45	1.55
48285422--48285459	17	2.2	17	100	0	76	31	0	15	52	1.43
48285395--48285488	46	2.0	46	97	0	179	28	0	22	48	1.50
48287048--48287073	7	3.7	7	100	0	52	57	15	0	26	1.38
48288211--48288333	51	2.4	51	89	4	187	47	0	25	26	1.57
48288316--48288348	10	3.0	11	86	13	50	45	0	36	18	1.49
48292773--48292800	13	2.2	13	100	0	56	64	7	0	28	1.20
48292919--48292974	20	2.8	21	81	10	64	60	0	0	39	0.97
48293197--48293335	9	15.4	9	70	17	76	29	4	0	65	1.17
48293197--48293230	11	3.2	11	87	4	52	23	0	2	73	0.97
48293225--48293290	34	2.0	33	82	14	82	27	4	0	68	1.09
48293440--48293593	83	1.9	82	81	6	186	31	10	16	42	1.81
48294793--48294836	18	2.4	19	81	14	56	47	4	2	45	1.35
48295253--48295310	27	2.3	24	85	8	71	62	1	3	32	1.22
48295315--48295349	14	2.6	13	86	8	52	62	2	0	34	1.10
48305641--48305753	30	3.8	29	82	5	145	28	14	19	38	1.90
48305641--48305753	60	1.9	60	88	0	172	28	14	19	38	1.90
48307060--48307090	9	3.4	9	100	0	62	38	9	0	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48307060--48307097	18	2.2	16	90	9	58	39	7	0	52	1.31
48307705--48307751	17	2.8	17	77	3	51	63	2	4	29	1.25
48307745--48307785	22	1.9	21	90	5	64	73	2	0	24	0.96
48307724--48307785	27	2.2	28	78	16	74	72	3	0	24	0.99
48307741--48307793	20	2.7	19	82	8	61	71	3	0	24	1.02
48308211--48308239	15	1.9	15	100	0	58	48	0	0	51	1.00
48310521--48310562	22	1.9	22	90	0	66	16	28	21	33	1.95
48311589--48311957	22	16.4	22	73	11	187	44	22	10	23	1.83
48311570--48311846	91	3.0	91	91	1	448	44	21	9	23	1.82
48311682--48311957	113	2.4	113	90	1	410	43	22	10	23	1.84
48311785--48311868	11	7.6	11	74	5	80	44	25	8	22	1.80
48312559--48312673	42	2.7	42	79	1	122	33	22	13	29	1.93
48313781--48313810	15	2.0	15	100	0	60	53	20	0	26	1.46
48319349--48319412	11	5.9	10	74	15	56	48	20	3	28	1.64
48319350--48319534	22	8.3	22	75	8	140	44	21	8	25	1.80
48319303--48319509	91	2.3	91	81	2	236	43	20	10	25	1.83
48321461--48321513	12	4.4	12	75	15	56	20	18	22	37	1.94
48321471--48321515	23	2.0	23	86	8	65	22	17	22	37	1.94
48322936--48323032	50	1.9	50	93	0	167	25	20	25	27	1.99
48327245--48327436	51	3.8	51	80	8	203	24	16	26	32	1.96
48327245--48327445	102	2.0	102	86	3	280	24	16	25	32	1.96
48327283--48327466	102	1.8	101	83	1	242	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48333332--48333372	17	2.3	18	87	4	57	46	19	2	31	1.63
48339724--48340003	146	2.0	135	88	7	407	57	2	22	17	1.52
48341872--48341957	39	2.2	39	80	2	100	25	27	25	20	1.99
48343620--48343715	47	2.0	47	97	0	183	41	5	6	46	1.51
48343955--48344003	24	2.0	24	100	0	98	16	8	12	63	1.51
48344312--48344352	21	2.0	21	85	9	57	34	2	7	56	1.40
48344335--48344432	37	2.7	37	82	7	103	47	1	5	45	1.31
48344367--48344432	10	6.7	10	72	19	50	50	0	3	46	1.16
48344629--48344685	16	3.6	16	82	0	69	29	26	5	38	1.78
48347063--48347095	16	2.0	17	88	5	50	33	0	3	63	1.10
48347364--48347408	9	5.0	9	94	0	81	42	24	11	22	1.86
48347432--48347478	7	6.7	7	90	9	62	25	2	12	59	1.45
48347440--48347484	20	2.2	20	88	7	65	24	0	11	64	1.26
48355019--48355049	16	1.9	16	93	0	53	48	9	6	35	1.62
48355231--48355267	19	2.0	19	89	5	58	35	0	8	56	1.29
48355236--48355304	20	3.5	20	82	11	81	36	0	10	53	1.35
48363342--48363381	19	2.2	18	86	8	55	55	2	5	37	1.35
48363249--48363519	131	2.1	130	85	0	353	44	6	14	33	1.72
48370956--48370993	10	3.9	10	79	6	51	57	2	0	39	1.12
48372438--48372593	43	3.7	41	76	11	147	22	16	29	31	1.96
48381604--48381783	40	4.8	36	64	16	87	25	22	17	35	1.95
48381604--48381783	76	2.4	76	81	3	202	25	22	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48388579--48388697	40	3.1	40	72	18	124	25	18	17	38	1.92
48388572--48388687	36	3.0	39	71	19	107	25	18	18	36	1.95
48388572--48388770	76	2.6	76	82	0	218	27	18	18	36	1.94
48388671--48388838	76	2.2	75	80	6	187	26	21	17	33	1.96
48391153--48391314	63	2.6	62	84	2	180	26	25	17	30	1.98
48397504--48397561	21	2.8	21	76	7	64	63	5	1	29	1.25
48399631--48399685	20	2.8	20	76	15	62	70	5	0	23	1.07
48400761--48400819	31	1.9	31	92	0	100	28	23	1	45	1.63
48405832--48405893	31	2.0	31	83	0	79	27	20	3	48	1.65
48408739--48408800	30	2.1	30	84	6	81	50	11	8	30	1.67
48417507--48417611	54	1.9	54	88	0	156	23	23	19	33	1.97
48431151--48431188	19	2.1	18	95	5	67	34	15	5	44	1.69
48434099--48434230	54	2.4	54	84	2	158	18	30	23	27	1.98
48434488--48434530	18	2.3	18	84	11	52	51	27	0	20	1.48
48458821--48458879	30	2.0	30	83	6	75	47	11	6	33	1.67
48466260--48466303	22	2.0	22	95	0	79	63	2	0	34	1.07
48468629--48468739	54	2.1	54	86	3	152	25	27	20	26	1.99
48468629--48468759	54	2.4	54	83	1	145	24	27	19	29	1.98
48474214--48474406	102	1.9	102	91	2	316	45	11	8	34	1.71
48475079--48475142	23	2.7	23	85	7	85	62	12	3	21	1.43
48497136--48497184	20	2.5	18	78	18	53	67	2	6	24	1.24
48500649--48500871	101	2.2	100	88	1	320	32	13	24	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48500681--48500908	33	6.8	33	69	9	124	32	14	24	28	1.95
48502992--48503016	7	3.6	7	100	0	50	48	36	0	16	1.46
48512435--48512476	7	6.0	7	94	0	75	45	0	0	54	0.99
48514547--48514607	26	2.5	24	86	5	77	29	4	3	62	1.32
48514532--48514681	24	6.0	25	71	14	98	31	6	3	59	1.38
48514641--48514722	38	2.2	37	91	6	130	26	0	4	68	1.10
48514661--48514754	39	2.5	38	79	11	104	22	2	6	69	1.22
48525131--48525215	40	2.1	40	84	4	109	49	12	7	30	1.68
48525236--48525568	86	3.9	86	85	3	386	42	16	9	31	1.79
48527426--48527463	15	2.6	14	84	8	58	44	34	0	21	1.52
48527835--48527912	41	1.9	41	86	5	113	29	30	17	21	1.97
48527956--48528066	40	2.8	39	80	8	118	25	26	19	28	1.99
48528145--48528182	16	2.3	18	86	13	55	26	21	0	52	1.47
48532175--48532250	38	2.0	38	97	0	143	27	6	18	47	1.73
48533908--48534143	117	2.0	117	97	0	445	39	22	15	22	1.91
48536467--48536615	72	2.1	72	86	7	205	36	10	8	43	1.71
48538281--48538331	4	12.8	4	100	0	102	50	23	0	25	1.49
48544718--48544758	21	2.0	21	90	0	64	19	29	21	29	1.98
48550640--48550665	4	6.5	4	100	0	52	76	0	0	23	0.78
48551190--48551887	127	5.5	127	91	0	1089	30	17	22	29	1.97
48551190--48551887	379	1.8	378	90	1	1128	30	17	22	29	1.97
48555016--48555075	28	2.2	27	90	3	93	21	1	33	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48555026--48555068	22	2.0	22	90	4	70	23	2	32	41	1.67
48555607--48555649	18	2.4	18	84	0	59	46	9	27	16	1.77
48556483--48556520	20	1.9	20	84	10	51	55	7	2	34	1.43
48557467--48557503	11	3.2	12	85	11	51	48	5	18	27	1.70
48557483--48557507	11	2.3	11	100	0	50	48	8	28	16	1.74
48557459--48557558	51	2.0	51	90	4	157	47	3	24	26	1.66
48557518--48557577	11	5.3	11	75	20	52	45	1	26	26	1.63
48557518--48557577	23	2.6	22	82	12	68	45	1	26	26	1.63
48557526--48557571	11	4.0	12	78	16	53	43	2	30	23	1.66
48560869--48560953	20	4.0	23	76	16	83	36	24	23	15	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240