genome.fa.s24.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  235  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70956855--70956903	23	2.0	24	88	7	73	65	0	2	32	1.04
70956860--70956930	35	2.0	36	86	5	101	59	0	2	38	1.12
70962166--70962240	39	1.9	39	88	0	114	34	46	6	12	1.67
70964128--70964165	18	2.1	18	95	0	67	52	13	5	28	1.61
70973649--70973676	11	2.5	11	100	0	56	0	10	35	53	1.36
70975047--70975098	15	3.6	15	80	12	56	44	0	1	53	1.11
70974996--70975215	120	1.8	121	95	1	397	43	1	5	49	1.35
70975163--70975200	17	2.2	18	90	9	62	42	0	0	57	0.98
70975363--70975453	45	2.0	45	85	2	121	37	28	6	27	1.82
70975434--70975502	16	4.2	16	92	3	120	36	37	1	24	1.65
70975434--70975502	33	2.1	32	94	2	120	36	37	1	24	1.65
70976021--70976063	22	2.0	21	86	4	59	41	4	4	48	1.44
70988868--70989177	161	1.9	161	80	8	362	39	21	12	27	1.89
70993605--70993663	31	2.0	30	83	6	75	33	8	13	44	1.74
70993858--70993929	29	2.3	30	81	9	74	50	13	4	31	1.61
70994304--70994346	19	2.3	19	80	8	52	62	9	6	20	1.48
70998605--70998645	21	2.0	21	90	0	64	19	29	21	29	1.98
71019749--71019804	29	1.9	29	96	0	103	35	0	7	57	1.26
71020639--71020686	24	2.0	24	100	0	96	16	45	20	16	1.85
71030935--71030989	21	2.6	21	85	0	74	29	9	32	29	1.88
71032139--71032246	44	2.5	44	87	3	146	15	30	21	32	1.94
71040523--71040569	21	2.2	22	88	3	69	23	19	36	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71054458--71054507	4	12.5	4	100	0	100	50	26	0	24	1.50
71060546--71060578	16	2.2	16	89	10	52	51	0	18	30	1.46
71061282--71061313	3	10.7	3	93	0	55	31	3	0	65	1.08
71065268--71065314	23	2.0	23	100	0	94	25	34	12	27	1.92
71068901--71069043	20	7.0	21	72	15	77	60	9	11	18	1.57
71068931--71068993	18	3.3	18	79	12	63	65	7	11	15	1.47
71068901--71068992	40	2.3	40	83	9	109	59	10	10	18	1.59
71068901--71069016	41	2.9	40	81	8	105	62	9	10	18	1.53
71068969--71069022	22	2.4	23	77	17	60	72	5	9	12	1.27
71068943--71068995	19	2.7	19	82	2	61	66	7	9	16	1.43
71079929--71079972	22	2.0	23	86	4	63	54	11	0	34	1.36
71080147--71080426	145	1.9	145	83	4	359	25	18	11	45	1.83
71081665--71081696	3	10.7	3	93	0	55	28	0	0	71	0.86
71096006--71096058	25	2.1	25	100	0	106	43	24	3	28	1.71
71097243--71097267	12	2.1	12	100	0	50	84	0	0	16	0.63
71101222--71101246	12	2.1	12	100	0	50	84	0	0	16	0.63
71102755--71102913	57	2.7	59	72	5	135	36	3	16	43	1.66
71109158--71109183	11	2.4	11	100	0	52	73	0	0	26	0.84
71109160--71109188	15	1.9	15	100	0	58	72	0	0	27	0.85
71109184--71109223	21	1.9	21	94	0	71	45	12	2	40	1.56
71113899--71113946	16	2.9	16	81	3	60	27	0	4	68	1.07
71118816--71118973	81	2.0	80	81	5	183	43	3	15	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71136975--71137009	15	2.2	16	90	5	54	42	0	0	57	0.99
71136978--71137031	21	2.4	22	81	12	56	42	0	0	57	0.98
71138698--71138741	21	2.0	22	86	4	63	56	2	0	40	1.11
71138996--71139035	15	2.6	16	88	4	55	30	0	5	65	1.14
71139229--71139264	18	2.1	18	90	10	58	22	16	5	55	1.62
71154680--71154707	5	5.6	5	100	0	56	17	0	0	82	0.68
71156103--71156156	20	2.6	21	76	5	56	24	0	9	66	1.20
71158952--71158992	22	1.9	21	85	14	57	24	4	14	56	1.58
71161739--71161777	6	6.3	6	88	5	60	30	0	17	51	1.46
71161741--71161776	19	1.9	18	94	5	63	27	0	19	52	1.46
71161933--71161964	2	16.0	2	100	0	64	50	0	50	0	1.00
71164014--71164040	8	3.4	8	100	0	54	55	0	0	44	0.99
71164006--71164040	16	2.2	16	89	0	52	57	0	2	40	1.14
71165028--71165057	11	2.7	11	89	0	51	50	0	3	46	1.18
71166852--71166903	23	2.3	23	86	0	68	30	9	17	42	1.81
71167757--71167822	30	2.2	30	86	0	87	54	15	7	22	1.66
71169734--71169795	6	10.2	6	82	3	79	48	14	17	19	1.81
71169776--71169872	45	2.2	45	81	10	110	44	19	14	21	1.86
71171155--71171187	8	4.1	8	92	0	57	60	0	0	39	0.97
71171151--71171186	16	2.2	17	95	5	65	58	0	0	41	0.98
71174433--71174470	13	2.8	14	84	15	53	63	0	0	36	0.95
71174890--71174933	22	2.1	21	83	8	54	52	0	4	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71175146--71175175	14	2.1	14	93	0	51	20	0	0	80	0.72
71176925--71176959	3	11.7	3	100	0	70	65	0	0	34	0.93
71181613--71181737	63	2.0	63	88	0	187	24	12	20	44	1.85
71188326--71188387	14	4.2	15	80	14	67	45	0	0	54	0.99
71190588--71190648	27	2.2	28	94	2	106	73	0	1	24	0.92
71192469--71192523	23	2.4	24	90	9	96	25	14	10	49	1.76
71199493--71199539	6	7.8	6	100	0	94	14	68	0	17	1.22
71220180--71220236	26	2.1	27	83	3	71	29	1	3	64	1.20
71221238--71221263	3	8.7	3	100	0	52	69	0	30	0	0.89
71221531--71221597	30	2.2	29	79	7	71	49	4	2	43	1.38
71221586--71221624	14	2.5	16	84	15	55	58	0	5	35	1.20
71221586--71221623	17	2.5	15	87	12	51	57	0	5	36	1.21
71222819--71222857	19	1.9	19	85	10	51	33	20	0	46	1.51
71223189--71223236	25	1.9	25	95	0	87	58	8	20	12	1.60
71223863--71223922	21	3.0	20	78	7	70	56	0	0	43	0.99
71225073--71225109	3	12.3	3	100	0	74	67	0	0	32	0.91
71239659--71240019	186	1.9	187	83	5	462	29	25	17	27	1.98
71240241--71240265	9	2.8	9	100	0	50	20	24	24	32	1.98
71240552--71240683	66	2.0	65	88	1	192	33	17	26	22	1.96
71245875--71245900	2	13.0	2	100	0	52	50	0	0	50	1.00
71248373--71248421	21	2.3	21	82	0	62	40	26	20	12	1.87
71251562--71251616	26	2.1	27	82	3	67	25	7	25	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71254114--71254147	15	2.3	15	90	10	52	79	2	14	2	0.97
71254119--71254173	28	2.0	28	89	7	85	74	5	16	3	1.15
71254537--71254580	23	1.9	24	90	9	74	54	2	20	22	1.56
71260271--71260327	29	2.0	29	86	10	82	0	17	10	71	1.12
71266765--71266987	107	2.1	105	77	12	233	48	9	12	29	1.72
71268147--71268194	18	2.7	18	77	3	53	25	4	2	68	1.18
71296983--71297017	17	2.1	17	100	0	70	42	5	22	28	1.76
71304693--71304736	18	2.4	19	81	7	56	40	0	2	56	1.11
71310721--71310878	77	2.1	77	95	0	280	35	18	23	22	1.96
71310998--71311034	20	1.9	20	88	5	58	43	2	0	54	1.14
71323073--71323120	15	3.2	15	71	11	53	41	8	22	27	1.82
71323067--71323130	30	2.1	31	91	2	103	40	6	26	26	1.79
71327701--71327808	15	7.2	15	65	12	69	45	7	21	25	1.78
71327697--71327808	30	3.7	30	90	4	172	46	7	21	25	1.76
71327697--71327817	60	2.0	60	91	3	199	45	6	22	25	1.76
71339968--71340019	27	1.9	27	96	0	95	15	32	23	28	1.95
71340079--71340143	28	2.4	27	89	2	94	44	0	10	44	1.39
71340790--71340829	16	2.5	16	83	0	53	40	35	2	22	1.68
71340877--71340961	43	2.0	43	100	0	170	18	30	16	34	1.93
71341364--71341432	9	7.4	9	80	6	75	26	10	26	37	1.88
71341364--71341432	29	2.5	27	90	4	102	26	10	26	37	1.88
71343110--71343165	28	2.0	28	96	0	103	46	12	17	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71345998--71346063	33	2.0	33	96	0	123	27	15	25	31	1.95
71348239--71348297	31	1.9	31	85	0	82	33	10	11	44	1.75
71349764--71349817	27	2.0	27	92	0	90	27	20	35	16	1.94
71349922--71350157	22	11.1	21	72	20	102	30	1	12	55	1.45
71349924--71350105	61	3.0	60	71	20	171	30	1	13	54	1.46
71349964--71350117	80	1.9	82	84	7	208	30	0	13	55	1.38
71350053--71350208	27	6.1	26	81	13	200	33	0	12	53	1.43
71350053--71350208	49	3.1	50	87	5	215	33	0	12	53	1.43
71349920--71350160	19	12.5	19	71	19	153	31	1	12	54	1.46
71350043--71350204	76	2.2	69	90	7	243	32	0	12	54	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240