genome.fa.s24.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  201  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61237801--61237842	20	2.0	21	86	13	61	35	16	9	38	1.81
61242961--61243004	18	2.4	18	80	0	52	54	13	2	29	1.51
61247577--61247615	17	2.3	17	87	12	62	28	0	0	71	0.86
61247580--61247639	20	3.1	19	74	9	59	30	3	1	65	1.19
61248846--61248885	16	2.5	16	91	0	62	47	2	7	42	1.45
61248891--61249064	58	3.0	58	95	0	303	39	4	9	45	1.58
61248946--61248976	16	2.0	15	93	6	53	32	0	9	58	1.31
61249131--61249174	24	1.9	24	90	9	74	61	2	0	36	1.09
61253606--61253643	18	2.2	18	86	9	53	23	7	0	68	1.16
61259157--61259201	16	2.8	16	86	6	56	46	2	2	48	1.26
61259409--61259460	19	2.7	19	82	5	61	26	30	13	28	1.94
61262790--61262829	18	2.2	18	86	0	53	7	5	45	42	1.54
61275176--61275212	14	2.9	13	84	15	51	64	13	0	21	1.27
61276219--61276555	166	2.0	169	90	3	540	47	11	14	26	1.78
61276742--61276796	18	3.0	18	75	2	56	7	5	43	43	1.55
61282666--61282710	18	2.5	18	85	0	63	28	4	46	20	1.69
61284149--61284181	17	1.9	17	100	0	66	48	6	15	30	1.69
61285498--61285527	15	1.9	15	93	6	51	6	6	3	83	0.90
61285530--61285597	27	2.5	28	95	4	122	48	0	10	41	1.37
61285602--61285627	13	2.0	13	100	0	52	23	0	0	76	0.78
61286387--61286575	10	20.1	10	62	27	51	1	31	0	67	0.97
61286405--61286555	14	10.9	13	66	20	51	1	32	0	66	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61286426--61286572	18	8.1	18	73	13	124	1	31	0	66	1.00
61286493--61286572	34	2.8	28	75	24	85	0	32	0	67	0.91
61286357--61286563	38	5.5	38	83	10	230	1	32	0	66	1.01
61286357--61286563	112	1.8	112	82	10	262	1	32	0	66	1.01
61286533--61286575	22	1.9	23	85	4	61	0	30	0	69	0.88
61286495--61286576	28	2.7	30	75	19	89	0	32	0	67	0.91
61286364--61286577	18	12.0	17	70	15	91	0	32	0	66	0.98
61286474--61286589	42	2.9	40	80	10	105	0	36	0	63	0.94
61286729--61286798	28	2.5	29	93	4	117	50	1	10	38	1.45
61293827--61293861	3	11.7	3	87	0	52	0	0	74	25	0.82
61293994--61294075	12	6.8	12	87	0	119	26	2	30	40	1.69
61294690--61294754	30	2.2	30	83	5	78	23	12	44	20	1.84
61311541--61311611	35	2.0	35	97	0	133	46	18	5	29	1.72
61314971--61315011	21	2.0	21	90	0	64	19	29	21	29	1.98
61317917--61318063	73	2.0	73	98	0	285	31	22	21	25	1.98
61330361--61330393	15	2.2	16	89	10	52	39	3	0	57	1.14
61330653--61330733	27	3.0	27	87	7	78	19	28	38	13	1.90
61330761--61330809	25	2.0	25	95	0	89	55	4	36	4	1.38
61331155--61331180	13	2.0	13	100	0	52	23	0	7	69	1.14
61331077--61331214	37	3.7	37	69	13	102	31	5	11	52	1.59
61331030--61331264	76	2.9	79	74	14	230	33	3	12	50	1.58
61334075--61334977	155	5.8	156	90	3	1346	30	9	7	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61334078--61334977	311	2.9	307	90	4	1332	30	9	8	52	1.62
61335380--61335463	25	3.2	26	75	18	84	0	32	0	67	0.91
61335396--61335455	10	5.5	10	76	18	57	0	30	0	70	0.88
61335382--61335455	35	2.1	36	94	2	132	0	31	0	68	0.89
61338052--61338095	9	5.1	9	89	10	74	56	11	0	31	1.35
61338061--61338098	16	2.4	16	95	0	67	55	10	0	34	1.34
61338168--61338209	16	2.6	16	92	0	66	42	7	2	47	1.43
61340465--61340493	3	9.7	3	100	0	58	31	0	34	34	1.58
61351074--61351138	33	2.0	33	96	0	121	33	26	9	30	1.88
61352780--61352814	11	3.1	11	84	8	52	28	0	2	68	1.04
61353288--61353341	16	3.4	16	89	0	81	29	0	35	35	1.58
61353555--61353596	15	2.7	16	82	14	52	52	2	0	45	1.13
61353564--61353605	15	2.9	15	82	10	52	52	0	0	47	1.00
61353590--61353776	61	3.1	60	71	14	195	48	6	2	42	1.42
61353558--61353776	120	1.8	120	97	0	420	48	6	1	42	1.39
61353674--61353725	15	3.6	15	80	12	56	53	1	0	44	1.11
61353593--61353777	59	3.1	59	68	20	175	48	7	2	42	1.42
61358906--61358936	15	2.0	16	93	6	55	22	0	6	70	1.09
61369189--61369217	9	3.2	9	100	0	58	31	10	10	48	1.71
61377134--61377294	81	2.0	81	91	2	261	27	22	17	31	1.97
61380360--61380417	29	2.0	29	89	0	89	36	10	24	29	1.88
61388680--61388705	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61393037--61393068	3	10.7	3	100	0	64	31	0	0	68	0.90
61412697--61412743	20	2.2	22	81	7	62	70	4	8	17	1.29
61412698--61412746	23	2.2	22	81	3	53	73	4	8	14	1.21
61413049--61413088	16	2.6	16	88	4	55	32	0	0	67	0.91
61415264--61415360	33	2.8	35	72	20	89	45	3	1	50	1.24
61415539--61415591	13	4.1	13	77	0	61	35	28	5	30	1.80
61416397--61416430	16	2.1	16	88	0	50	50	14	17	17	1.79
61419231--61419271	21	2.0	21	90	0	64	29	21	29	19	1.98
61421177--61421210	16	2.1	16	88	0	50	50	14	17	17	1.79
61423332--61424352	508	2.0	507	96	0	1898	40	19	12	28	1.87
61424820--61424892	30	2.4	31	86	9	105	36	1	1	60	1.14
61424811--61424877	11	6.4	11	75	13	61	35	1	1	61	1.15
61424861--61424899	20	2.0	20	89	0	60	38	0	0	61	0.96
61425003--61425087	22	3.8	22	76	15	84	40	18	23	17	1.92
61425020--61425098	25	3.3	24	75	18	85	39	18	24	17	1.92
61425003--61425098	47	2.1	46	94	2	165	39	18	23	17	1.92
61426050--61426095	5	9.6	5	81	9	51	50	6	0	43	1.28
61426049--61426083	18	1.9	18	94	0	61	51	2	0	45	1.16
61440971--61441053	38	2.2	37	82	2	103	24	3	6	66	1.31
61454567--61454597	4	7.8	4	100	0	62	74	0	25	0	0.82
61460261--61460306	24	1.9	24	90	0	74	41	13	10	34	1.79
61461762--61461811	6	7.9	7	89	10	65	16	24	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61465437--61465535	50	2.0	50	84	4	128	38	11	17	33	1.85
61471800--61471861	21	3.0	21	92	0	106	45	17	22	14	1.85
61490090--61490139	24	2.0	24	84	7	64	44	18	12	26	1.84
61493820--61493848	11	2.6	11	100	0	58	20	37	20	20	1.94
61501390--61501423	12	2.9	12	86	4	52	32	0	0	67	0.91
61504317--61504362	23	2.0	23	83	8	58	41	10	13	34	1.79
61504475--61504528	20	2.7	20	85	5	74	57	7	0	35	1.27
61506313--61506421	55	2.0	55	92	0	182	20	28	17	33	1.95
61508126--61508174	21	2.5	20	77	16	57	30	26	24	18	1.98
61509027--61509051	6	4.2	6	100	0	50	0	16	0	84	0.63
61509095--61509133	20	2.0	20	90	10	62	10	12	5	71	1.28
61509437--61509474	14	2.4	17	87	12	55	52	0	0	47	1.00
61509454--61509492	12	3.4	11	80	13	51	46	2	0	51	1.14
61509478--61509511	17	2.0	17	88	0	50	50	2	0	47	1.16
61516532--61516556	4	6.2	4	100	0	50	24	24	0	52	1.48
61518023--61518062	16	2.4	18	80	19	52	45	0	2	52	1.14
61526724--61526858	41	3.4	40	76	11	134	32	25	15	26	1.95
61527017--61527063	24	2.0	24	84	16	62	51	14	0	34	1.43
61527728--61527766	13	2.6	16	76	23	57	0	30	0	69	0.89
61527731--61527763	13	2.6	13	95	4	59	0	30	0	69	0.88
61527755--61527810	24	2.4	22	80	16	60	8	19	1	69	1.24
61527854--61527892	20	2.0	20	95	5	71	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61527857--61527907	21	2.5	20	84	6	59	39	7	1	50	1.42
61528898--61528951	26	2.2	25	83	9	67	31	1	0	66	1.02
61528925--61528975	22	2.3	22	83	10	59	31	1	1	64	1.15
61528887--61528975	45	2.0	46	81	2	108	31	2	2	64	1.18
61536613--61536647	17	2.1	17	88	0	52	80	2	0	17	0.84
61536745--61536779	11	3.2	11	88	11	54	0	54	0	45	0.99
61549651--61549825	70	2.5	69	85	2	226	28	15	22	33	1.95
61549829--61550178	72	4.7	72	83	9	411	31	15	19	33	1.93
61549829--61550173	149	2.3	147	84	5	462	31	15	19	33	1.93
61550577--61550828	72	3.5	72	91	4	400	32	17	18	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240