genome.fa.s24.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  215  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64921659--64921698	16	2.5	16	92	8	64	25	0	7	67	1.16
64923154--64923186	17	1.9	17	93	0	57	45	9	24	21	1.80
64927993--64928038	23	2.0	23	95	4	85	41	8	17	32	1.80
64931750--64931779	3	10.0	3	100	0	60	66	0	33	0	0.92
64934543--64934589	21	2.2	22	92	3	78	21	19	38	21	1.94
64935982--64936011	15	2.0	15	93	0	51	6	23	20	50	1.71
64937041--64937077	19	1.9	19	94	0	65	32	18	18	29	1.96
64939045--64939235	61	3.2	61	67	20	166	45	2	4	48	1.35
64939096--64939130	18	2.0	17	88	5	52	45	0	0	54	0.99
64938989--64939272	120	2.4	120	90	2	446	45	1	4	48	1.32
64939216--64939250	18	2.0	17	88	5	52	45	0	0	54	0.99
64939216--64939270	15	3.4	16	80	16	53	47	0	1	50	1.11
64939486--64939533	16	3.0	16	93	0	87	37	35	0	27	1.57
64939731--64939773	20	2.1	21	82	4	52	58	0	2	39	1.11
64939913--64939944	15	2.1	15	94	5	55	71	0	0	28	0.86
64943178--64946827	213	17.1	213	85	3	4421	33	20	15	30	1.93
64951635--64953259	213	7.6	213	83	4	1792	33	20	15	30	1.94
64960352--64962435	213	9.8	213	92	0	3199	33	20	17	29	1.95
64973397--64973437	21	2.0	21	90	0	64	19	29	21	29	1.98
64978807--64978836	15	2.0	15	93	0	51	6	23	20	50	1.71
64979866--64979902	19	1.9	19	94	0	65	32	18	18	29	1.96
64981952--64982142	61	3.2	61	67	20	166	45	2	4	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64982003--64982037	18	2.0	17	88	5	52	45	0	0	54	0.99
64981896--64982179	120	2.4	120	90	2	446	45	1	4	48	1.32
64982123--64982157	18	2.0	17	88	5	52	45	0	0	54	0.99
64982123--64982177	15	3.4	16	80	16	53	47	0	1	50	1.11
64982303--64982412	45	2.6	43	77	11	111	34	27	5	32	1.80
64982393--64982428	16	2.2	16	100	0	72	38	36	0	25	1.56
64985577--64986124	28	20.4	28	85	9	666	32	0	20	45	1.53
64985851--64985903	23	2.3	21	100	0	70	37	0	18	43	1.51
64985577--64986127	79	6.9	79	85	9	692	32	0	21	46	1.53
64988087--64988120	15	2.3	15	90	5	52	67	5	0	26	1.13
64988116--64988145	13	2.2	13	94	5	51	56	0	0	43	0.99
64988116--64988145	7	4.4	7	91	8	53	56	0	0	43	0.99
64988325--64988366	22	1.9	22	90	0	66	33	0	33	33	1.58
64988338--64988396	30	2.0	30	93	0	100	33	0	35	30	1.58
64988316--64988418	52	2.0	51	86	5	145	33	0	32	33	1.65
64988368--64988437	22	3.2	22	90	8	115	38	1	28	31	1.66
64997914--64997954	17	2.4	17	100	0	82	24	29	34	12	1.91
64999232--64999260	2	14.5	2	100	0	58	0	51	0	48	1.00
65014817--65014859	11	4.0	11	84	3	61	30	2	46	20	1.63
65014817--65014859	21	2.0	21	90	4	68	30	2	46	20	1.63
65018906--65019016	18	6.2	18	91	0	177	30	14	24	30	1.94
65019548--65019590	22	2.0	22	86	4	61	30	4	44	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65019559--65019590	11	2.9	11	90	0	55	31	3	46	18	1.65
65022414--65022456	22	2.0	22	100	0	86	48	0	13	37	1.43
65024678--65024702	2	12.5	2	100	0	50	52	0	0	48	1.00
65024786--65024836	22	2.3	22	93	0	84	50	0	9	39	1.35
65024788--65024846	22	2.8	21	85	10	68	52	1	8	37	1.42
65025981--65026020	21	1.9	21	84	0	53	5	15	57	22	1.57
65026400--65027140	44	16.9	44	75	6	493	29	25	16	27	1.97
65026592--65027140	132	4.2	132	94	0	927	28	25	17	28	1.97
65026400--65026788	176	2.2	176	98	0	746	29	25	16	28	1.96
65027255--65027507	45	5.4	45	64	19	140	28	22	19	29	1.98
65027253--65027541	95	3.0	95	98	0	551	28	22	20	29	1.98
65027443--65027718	134	2.1	134	95	1	500	29	23	19	27	1.98
65027666--65028015	86	4.1	86	93	0	565	26	24	23	26	2.00
65027741--65027961	42	5.2	42	61	20	107	24	23	25	26	2.00
65032118--65032161	19	2.3	20	84	7	56	40	11	20	27	1.86
65034345--65034395	22	2.3	22	93	0	84	50	0	9	39	1.35
65034347--65034405	22	2.8	21	85	10	68	52	1	8	37	1.42
65035541--65035580	21	1.9	21	84	0	53	5	15	57	22	1.57
65035959--65036699	44	16.9	44	75	6	493	29	25	16	27	1.97
65036151--65036699	132	4.2	132	94	0	927	28	25	17	28	1.97
65035959--65036347	176	2.2	176	98	0	746	29	25	16	28	1.96
65036814--65037066	45	5.4	45	64	19	140	28	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65036812--65037100	95	3.0	95	98	0	551	28	22	20	29	1.98
65037002--65037277	134	2.1	134	96	1	509	28	23	20	27	1.99
65037225--65037574	86	4.1	86	93	0	565	26	24	23	26	2.00
65037300--65037520	42	5.2	42	61	20	107	24	23	25	26	2.00
65041671--65041714	19	2.3	20	84	7	56	40	11	20	27	1.86
65043898--65043948	22	2.3	22	93	0	84	50	0	9	39	1.35
65043900--65043958	22	2.8	21	85	10	68	52	1	8	37	1.42
65045094--65045133	21	1.9	21	84	0	53	5	15	57	22	1.57
65045504--65046244	44	16.9	44	75	6	493	29	25	16	27	1.97
65045696--65046244	132	4.2	132	94	0	927	28	25	17	28	1.97
65045504--65045892	176	2.2	176	98	0	746	29	25	16	28	1.96
65046359--65046611	45	5.4	45	64	19	140	28	22	19	29	1.98
65046357--65046645	95	3.0	95	98	0	551	28	22	20	29	1.98
65046547--65046822	134	2.1	134	96	1	509	28	23	20	27	1.99
65046770--65047119	86	4.1	86	93	0	565	26	24	23	26	2.00
65046845--65047065	42	5.2	42	61	20	107	24	23	25	26	2.00
65071657--65071696	21	1.9	21	89	0	62	52	15	12	20	1.74
65073674--65073704	6	5.0	6	96	4	53	32	16	32	19	1.94
65090421--65091104	44	15.5	45	77	5	628	28	16	26	28	1.97
65090421--65091104	132	5.2	132	95	0	1190	28	16	26	28	1.97
65093076--65093139	27	2.4	27	78	14	71	32	10	3	53	1.52
65093315--65093362	24	2.0	24	88	8	71	31	10	2	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65098587--65098648	26	2.4	25	78	5	70	64	9	4	20	1.42
65106811--65107054	129	1.9	129	84	1	328	22	27	15	33	1.95
65109832--65109991	84	1.9	84	96	2	295	25	15	20	40	1.90
65111234--65111297	33	1.9	33	87	6	94	26	3	10	59	1.46
65113597--65114003	210	1.9	210	86	1	573	32	21	14	32	1.93
65118629--65118678	25	2.0	25	96	0	91	48	14	4	34	1.62
65119627--65119809	41	4.5	41	91	1	296	15	17	29	37	1.90
65120240--65120320	23	3.5	23	71	22	71	23	2	24	49	1.62
65120331--65120371	22	1.9	21	85	14	57	19	0	24	56	1.42
65122844--65122973	47	2.8	47	92	0	224	26	6	19	47	1.74
65124262--65124320	29	2.0	29	100	0	118	30	23	3	42	1.71
65124448--65124504	9	6.7	9	76	9	57	42	12	1	43	1.52
65124471--65124502	16	2.0	16	93	0	55	46	12	0	40	1.42
65124597--65124666	12	6.0	12	76	6	63	48	18	2	30	1.62
65124720--65125589	9	95.8	9	78	5	910	47	17	3	31	1.64
65124720--65125540	100	8.3	100	83	6	728	47	18	3	30	1.64
65127954--65128089	66	2.1	66	91	0	218	39	18	27	13	1.89
65128390--65128527	43	3.2	43	80	8	156	25	18	27	28	1.98
65130154--65130236	41	2.0	41	100	0	166	51	21	12	14	1.74
65131122--65131183	32	1.9	32	87	6	90	27	3	11	58	1.48
65140040--65140083	16	2.8	16	100	0	88	27	0	13	59	1.35
65142806--65142847	18	2.3	18	91	0	66	64	0	2	33	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65143515--65143557	21	2.0	21	95	0	77	27	0	37	34	1.57
65143538--65143570	16	2.1	16	94	0	57	33	0	36	30	1.58
65143549--65143643	45	2.1	44	88	1	136	34	5	27	32	1.79
65143811--65143845	18	2.0	17	88	5	52	54	0	0	45	0.99
65143769--65143841	27	2.7	27	76	8	76	52	2	0	45	1.15
65143730--65144001	144	1.9	147	94	3	487	46	3	2	46	1.35
65143955--65143989	18	2.0	17	88	5	52	54	0	0	45	0.99
65143975--65144153	55	3.1	54	64	22	128	49	7	2	41	1.43
65143970--65144157	61	3.1	61	68	14	190	49	6	2	41	1.41
65143938--65144160	120	1.9	120	97	0	419	49	6	2	42	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240