genome.fa.s24.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  114  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35479364--35479615	43	5.8	45	80	10	231	32	25	14	27	1.95
35480515--35480546	9	3.4	9	95	4	55	43	21	0	34	1.53
35482276--35482327	23	2.3	23	86	0	77	38	23	11	26	1.89
35485024--35485086	31	2.0	32	84	6	83	30	1	1	66	1.10
35497205--35497277	29	2.4	30	90	4	112	41	26	0	32	1.56
35500225--35500258	13	2.8	12	86	8	50	17	26	0	55	1.42
35504382--35504588	102	2.0	102	97	0	387	30	11	23	34	1.90
35505039--35505082	13	3.5	13	82	11	56	47	2	15	34	1.58
35509115--35509179	27	2.4	27	92	7	105	40	10	0	49	1.38
35509603--35509666	19	3.4	19	76	4	76	34	9	3	53	1.49
35509680--35509899	82	2.8	81	85	11	264	45	10	5	39	1.60
35509749--35509906	82	1.9	82	100	0	316	43	10	6	39	1.65
35509975--35510070	19	5.2	19	81	5	124	48	0	13	37	1.43
35509975--35510070	37	2.6	37	98	0	183	48	0	13	37	1.43
35510750--35510811	28	2.3	27	94	5	108	51	0	4	43	1.23
35515023--35515077	28	2.0	28	81	0	65	47	1	3	47	1.30
35521602--35521641	3	13.0	3	84	5	53	62	2	5	30	1.29
35522324--35522350	13	2.1	13	100	0	54	29	14	14	40	1.86
35522843--35522886	23	1.9	23	100	0	88	40	25	4	29	1.75
35523223--35523286	22	2.9	22	83	6	76	34	0	3	62	1.11
35528466--35528490	13	1.9	13	100	0	50	32	4	24	40	1.73
35529488--35529650	43	3.8	43	80	11	156	23	17	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35535360--35535560	40	5.0	40	88	1	287	43	26	16	12	1.84
35535952--35536018	20	3.4	20	91	2	109	25	10	16	47	1.78
35538304--35538350	24	2.0	24	95	0	85	59	10	23	6	1.53
35539632--35539714	28	3.2	28	62	28	74	43	9	7	39	1.65
35539623--35539722	49	2.0	49	100	0	200	44	12	6	38	1.66
35542562--35542660	28	3.5	29	83	6	114	30	27	15	27	1.96
35548527--35548576	14	3.5	15	78	10	52	46	4	10	40	1.56
35553843--35553889	25	1.9	24	86	4	67	19	6	12	61	1.52
35556244--35556280	19	1.9	19	88	0	56	48	0	0	51	1.00
35556757--35556813	29	2.0	28	86	3	78	56	1	1	40	1.20
35559874--35559919	13	3.5	13	82	14	58	34	0	17	47	1.48
35563951--35563983	12	3.0	11	87	12	50	24	0	3	72	0.98
35583120--35583306	44	4.3	44	80	3	173	34	22	21	20	1.97
35585262--35585448	101	1.9	101	100	0	374	29	19	11	39	1.86
35585567--35585623	28	2.0	28	96	0	105	22	22	31	22	1.98
35590416--35590494	40	2.0	40	92	0	131	32	15	31	20	1.93
35593099--35593173	7	10.1	7	86	11	105	56	12	16	16	1.68
35593093--35593172	30	2.7	29	94	3	117	56	11	16	16	1.67
35593099--35593173	23	3.4	21	85	10	105	56	12	16	16	1.68
35597884--35597922	20	2.0	20	90	10	62	15	23	5	56	1.59
35604956--35605079	60	2.1	59	80	7	135	33	26	16	24	1.96
35611053--35611116	24	2.7	24	82	0	74	48	26	14	10	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35612256--35612297	22	1.9	22	85	0	57	66	0	28	4	1.12
35626475--35626520	6	7.7	6	100	0	92	50	15	0	34	1.44
35627747--35627774	3	9.3	3	100	0	56	67	0	0	32	0.91
35638580--35638622	23	1.9	23	85	4	61	37	6	13	41	1.72
35642524--35642656	50	2.6	51	79	9	155	31	28	14	25	1.95
35642524--35642711	51	3.7	51	81	5	177	30	27	14	27	1.95
35642625--35642707	26	3.2	24	68	21	62	33	25	13	27	1.93
35645809--35645904	44	2.1	46	84	7	126	36	25	5	33	1.78
35646943--35647071	46	2.8	46	89	0	195	51	11	3	33	1.57
35652120--35652592	47	10.1	47	94	0	768	32	9	29	28	1.88
35652711--35652789	37	2.1	37	90	0	122	24	18	31	25	1.98
35655173--35655357	100	1.9	100	87	2	273	29	20	10	39	1.86
35656733--35656770	16	2.4	16	95	0	67	44	0	21	34	1.52
35669911--35670026	33	3.5	33	84	4	171	32	6	14	45	1.72
35670084--35670170	37	2.4	37	88	3	122	34	11	14	39	1.83
35673079--35673116	17	2.2	17	100	0	76	10	13	10	65	1.47
35673842--35673917	23	3.5	22	76	16	70	18	7	23	50	1.73
35675114--35675241	25	5.3	25	76	17	153	49	6	7	36	1.57
35675106--35675241	48	2.8	48	98	0	263	49	7	7	36	1.59
35675107--35675224	23	5.0	22	74	21	114	50	7	8	33	1.61
35678897--35679064	47	3.6	45	70	19	132	45	2	3	47	1.35
35678823--35679030	91	2.3	91	88	0	308	46	2	3	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35678844--35679005	44	3.6	43	69	19	116	45	1	3	48	1.30
35678843--35678919	28	2.8	28	73	9	52	42	1	3	51	1.28
35679180--35679234	24	2.2	26	81	12	71	45	0	1	52	1.11
35679369--35679466	45	2.2	45	85	1	126	32	27	5	34	1.79
35679357--35679466	45	2.6	44	78	8	122	31	28	5	34	1.80
35679445--35679498	16	3.4	16	94	0	90	31	35	0	33	1.58
35689323--35689356	16	2.1	16	88	0	50	76	0	0	23	0.79
35690287--35690355	27	2.7	25	84	4	84	26	27	20	26	1.99
35695475--35695525	17	2.7	20	73	17	54	25	13	17	43	1.86
35696818--35696861	23	1.9	23	90	0	70	40	0	2	56	1.11
35701950--35702132	43	4.3	43	88	2	244	24	24	18	32	1.97
35702481--35702657	87	2.0	87	90	0	273	11	29	16	41	1.85
35702567--35702617	21	2.4	21	83	6	68	1	41	15	41	1.58
35704260--35704304	12	3.8	12	90	0	72	28	2	17	51	1.58
35704253--35704311	24	2.5	24	89	5	86	27	1	18	52	1.55
35704263--35704317	24	2.5	22	85	8	67	27	1	21	49	1.60
35704437--35704475	19	2.0	20	95	5	62	56	0	0	43	0.99
35704499--35704579	9	9.0	9	73	15	69	38	1	16	44	1.55
35704503--35704581	16	5.0	16	76	14	83	39	1	15	44	1.54
35712281--35712434	28	5.5	28	91	1	220	32	28	12	25	1.93
35716865--35716915	23	2.2	24	85	3	68	31	45	5	17	1.72
35717212--35717294	41	2.0	40	88	2	121	27	32	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35717299--35718161	114	7.6	113	84	4	1081	27	25	19	27	1.99
35722158--35722215	25	2.3	25	78	0	71	41	18	22	17	1.90
35722661--35722728	28	2.5	28	85	4	68	42	23	5	27	1.77
35722674--35722731	28	2.1	28	100	0	116	43	20	3	32	1.69
35722711--35722741	16	1.9	16	100	0	62	51	22	6	19	1.69
35726847--35726895	13	4.2	11	76	23	55	67	10	0	22	1.20
35726934--35726973	6	7.2	6	78	16	50	77	0	22	0	0.77
35726934--35726973	11	3.6	11	93	0	71	77	0	22	0	0.77
35727913--35727960	13	3.8	12	81	10	51	85	0	8	6	0.74
35727914--35727960	6	7.7	6	86	13	51	85	0	8	6	0.75
35727920--35727960	19	2.2	19	86	8	57	85	0	9	4	0.73
35729216--35729855	50	12.8	50	84	2	725	33	22	19	24	1.97
35729216--35729853	249	2.6	248	84	1	812	33	22	19	24	1.97
35729855--35729906	23	2.3	23	86	0	68	42	21	7	28	1.80
35730389--35730426	8	4.6	8	90	6	58	23	0	0	76	0.79
35738641--35738750	50	2.2	50	81	4	123	30	20	27	21	1.98
35738641--35738750	25	4.4	25	75	7	80	30	20	27	21	1.98
35741106--35741215	23	4.9	23	69	6	73	42	23	17	16	1.88
35741100--35741207	46	2.3	46	91	0	171	42	25	16	15	1.88
35741698--35741781	25	3.4	25	81	3	107	30	16	21	30	1.95
35743517--35743554	17	2.2	17	90	0	58	18	21	36	23	1.95
35755947--35755991	19	2.3	21	82	17	62	17	4	0	77	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35760131--35760191	6	9.3	6	74	13	50	13	6	3	77	1.09
35760131--35760191	20	3.2	18	78	19	61	13	6	3	77	1.09
35763048--35763090	22	2.0	22	90	0	68	34	0	4	60	1.17
35774962--35775002	7	5.6	7	85	8	55	26	21	7	43	1.79
35774962--35775002	15	2.8	14	88	7	55	26	21	7	43	1.79
35774969--35775030	19	3.1	19	81	6	70	25	20	6	46	1.74
35779553--35779596	23	1.9	23	100	0	88	36	13	4	45	1.64
35781579--35781725	27	5.5	26	76	13	95	43	16	19	20	1.88
35781687--35781803	27	4.4	27	87	1	155	35	18	22	23	1.95
35781606--35781803	54	3.7	54	78	8	156	38	19	21	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240