genome.fa.s24.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  170  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52747991--52748052	29	2.1	29	84	0	79	43	25	8	22	1.80
52752779--52752835	29	2.0	29	89	0	87	31	33	12	22	1.91
52757131--52757168	18	2.2	18	90	9	62	21	7	0	71	1.11
52761055--52761104	24	2.1	23	85	10	66	72	0	28	0	0.86
52769654--52769691	20	1.9	20	88	0	58	10	34	18	36	1.85
52773131--52773162	12	2.8	11	90	9	55	28	18	15	37	1.92
52781551--52781593	22	2.0	22	86	9	61	25	6	16	51	1.69
52782327--52782422	50	1.9	50	95	0	174	27	18	19	34	1.96
52783286--52783327	16	2.6	16	92	0	66	33	0	35	30	1.58
52783572--52783606	18	2.0	17	88	5	52	54	0	0	45	0.99
52783706--52783747	15	2.7	16	82	14	52	52	2	0	45	1.13
52783459--52783772	154	2.0	156	95	1	569	44	3	5	46	1.41
52783715--52783756	15	2.9	15	82	10	52	52	0	0	47	1.00
52783704--52784000	120	2.5	121	90	6	453	50	5	2	41	1.38
52783825--52783876	15	3.6	15	80	12	56	53	1	0	44	1.11
52783802--52783892	44	2.1	43	81	6	103	53	3	2	40	1.29
52783961--52783999	17	2.5	15	80	15	51	51	0	5	43	1.24
52783966--52783999	17	2.0	17	94	0	59	50	0	5	44	1.26
52784032--52784226	93	2.1	92	88	4	286	47	4	4	44	1.41
52786829--52786879	24	2.1	24	100	0	102	33	7	23	35	1.84
52791311--52791345	19	1.9	19	88	11	56	45	0	5	48	1.26
52805268--52805314	20	2.3	20	96	0	85	25	10	8	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52808079--52808159	36	2.3	34	76	17	83	30	2	4	61	1.30
52808103--52808229	67	1.9	69	82	9	163	33	3	3	59	1.31
52809544--52809621	29	2.7	29	84	6	86	32	11	17	38	1.86
52809561--52809631	29	2.4	29	90	0	106	33	9	18	38	1.84
52809914--52809944	15	2.0	16	93	6	55	35	0	0	64	0.94
52831392--52831428	9	4.1	9	92	0	65	45	13	10	29	1.77
52831477--52831537	30	2.0	31	87	3	88	19	42	0	37	1.52
52831779--52831839	19	3.4	18	78	19	65	24	22	0	52	1.47
52832027--52832095	19	3.6	19	69	21	63	36	2	0	60	1.11
52832028--52832168	38	3.8	38	87	10	186	36	2	0	60	1.11
52832028--52832142	38	3.0	39	93	3	189	34	3	0	61	1.13
52837792--52837829	18	2.1	18	85	9	51	44	7	15	31	1.75
52838715--52838773	30	2.0	30	86	6	84	50	0	13	35	1.42
52842728--52842853	44	2.9	43	79	9	121	30	22	16	30	1.96
52842908--52843166	132	2.0	132	91	1	421	25	25	19	28	1.99
52842933--52843157	44	5.1	45	71	10	151	27	25	18	28	1.98
52847090--52847374	51	5.6	51	81	4	303	29	14	25	30	1.94
52847086--52847372	102	2.8	100	84	6	357	29	14	25	30	1.95
52850701--52850755	23	2.4	23	87	0	83	45	0	29	25	1.54
52853526--52853575	22	2.3	20	77	12	55	40	16	0	44	1.47
52853740--52853880	41	3.4	41	89	0	201	32	23	17	26	1.97
52853740--52853897	82	1.9	81	85	1	217	34	23	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52853772--52853899	41	3.1	42	83	9	174	35	21	17	25	1.95
52854061--52854274	65	3.3	65	77	10	188	43	14	7	35	1.73
52858729--52858758	15	2.0	15	93	0	51	23	20	6	50	1.71
52861444--52861500	6	9.7	6	81	7	55	70	12	5	12	1.33
52861477--52861529	21	2.6	20	81	3	52	73	5	11	9	1.24
52862372--52862421	7	7.3	7	76	19	52	68	2	16	14	1.31
52863866--52864324	50	9.2	50	70	8	288	33	23	18	24	1.96
52863855--52864324	100	4.7	100	88	2	615	34	23	18	24	1.96
52865816--52865858	3	14.3	3	95	0	77	34	2	0	62	1.08
52871749--52871777	15	1.9	15	100	0	58	31	0	20	48	1.50
52888019--52888081	31	2.0	31	90	6	101	34	20	19	25	1.96
52893333--52893437	54	2.0	52	89	9	160	29	0	15	55	1.41
52894183--52894211	14	2.0	15	93	6	51	31	6	6	55	1.53
52916868--52916928	30	2.0	31	90	3	97	36	0	44	19	1.51
52916976--52917012	9	4.1	9	92	0	65	29	10	13	45	1.77
52921201--52921275	19	3.7	19	70	21	55	65	0	4	30	1.11
52921326--52921365	19	2.0	20	85	4	55	67	0	5	27	1.11
52921349--52921373	13	1.9	13	100	0	50	64	0	4	32	1.12
52921559--52921624	18	3.3	20	70	15	57	31	3	3	62	1.26
52924792--52924856	28	2.3	29	86	7	89	36	1	0	61	1.05
52925060--52925310	91	2.8	89	80	8	262	39	8	15	37	1.78
52925082--52925339	88	2.9	87	82	8	249	39	8	14	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52933310--52933339	12	2.5	12	94	0	51	56	20	0	23	1.42
52933591--52933639	24	2.0	24	100	0	98	32	8	16	42	1.77
52946511--52946557	21	2.2	21	88	0	67	17	38	27	17	1.91
52958957--52958997	3	13.7	3	94	0	73	63	0	0	36	0.95
52961285--52961529	42	5.8	42	89	2	348	22	21	20	35	1.96
52961246--52961531	84	3.4	83	83	6	337	23	20	20	34	1.97
52961911--52961961	21	2.4	21	86	0	75	1	45	17	35	1.60
52969561--52969735	29	6.4	29	77	14	201	23	0	31	45	1.53
52969627--52969666	13	3.2	12	83	16	55	25	0	25	50	1.50
52969561--52969735	53	3.2	54	88	5	246	23	0	31	45	1.53
52969735--52969848	25	4.7	25	69	20	98	42	15	2	38	1.61
52970886--52970938	7	7.6	7	100	0	106	58	13	0	28	1.35
52971079--52971117	20	2.0	20	85	10	53	53	7	2	35	1.43
52972152--52972187	11	3.2	11	96	4	63	47	0	36	16	1.47
52972049--52972172	51	2.4	52	86	5	182	42	0	25	30	1.61
52972462--52972501	5	7.8	5	91	5	62	80	5	0	15	0.88
52973728--52973767	21	1.9	21	89	0	62	75	2	0	22	0.93
52974448--52974539	22	4.2	22	87	5	141	30	29	0	40	1.57
52974511--52974569	30	2.0	30	93	0	100	30	35	0	33	1.58
52974489--52974591	52	2.0	51	85	9	138	32	33	0	34	1.58
52974541--52974582	22	1.9	22	90	0	66	33	33	0	33	1.58
52974626--52974688	29	2.1	30	88	2	92	36	0	1	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52976621--52976670	21	2.4	21	82	0	64	42	32	20	6	1.76
52976845--52977694	149	5.6	151	85	8	916	47	23	0	28	1.55
52976840--52977717	126	6.9	127	80	13	737	47	23	0	28	1.56
52976857--52977563	23	28.9	23	78	14	661	48	23	0	28	1.53
52976840--52977774	23	36.3	29	72	20	552	46	23	0	29	1.58
52976840--52977726	51	17.4	57	71	21	304	47	23	0	28	1.56
52979269--52979525	125	2.1	125	86	2	356	32	21	15	29	1.95
52999077--52999134	30	1.9	30	96	0	107	50	5	22	22	1.69
53005850--53005982	44	3.0	44	92	0	203	27	24	18	28	1.98
53005993--53006302	44	7.0	45	65	7	159	20	25	27	26	1.99
53005993--53006646	88	7.4	88	85	1	801	21	24	26	27	1.99
53006016--53006653	351	1.8	352	87	2	969	22	24	25	27	2.00
53026858--53026893	18	1.9	18	88	5	54	22	16	11	50	1.77
53033217--53033260	19	2.2	21	88	11	67	54	4	0	40	1.21
53033222--53033262	18	2.3	17	84	12	55	48	4	0	46	1.23
53036484--53036591	57	1.9	57	98	0	207	28	17	29	24	1.97
53042113--53042179	29	2.3	30	82	7	84	44	17	7	29	1.76
53042074--53042179	29	3.6	28	72	13	81	48	17	8	25	1.76
53044796--53044836	21	2.0	21	90	0	64	19	29	21	29	1.98
53053432--53053459	8	3.5	8	100	0	56	21	0	0	78	0.75
53053429--53053497	21	3.5	20	76	16	65	27	1	1	69	1.05
53053656--53053686	16	1.9	16	100	0	62	38	29	0	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53056550--53056586	14	2.6	14	95	0	65	45	2	5	45	1.40
53058613--53058665	21	2.6	22	80	14	69	67	0	15	16	1.23
53060055--53060162	39	2.7	40	76	13	116	37	25	21	16	1.94
53060228--53060380	41	3.7	41	84	6	193	24	20	23	31	1.98
53060779--53060811	14	2.3	15	89	5	50	27	0	36	36	1.57
53061539--53061734	108	1.8	109	89	3	315	38	12	13	35	1.83
53061603--53061900	149	2.0	149	86	3	413	39	13	13	33	1.83
53066483--53066667	43	4.3	43	86	2	246	20	15	34	30	1.93
53066762--53066803	22	1.9	22	95	0	75	40	28	21	9	1.84
53067419--53067461	17	2.6	16	85	3	59	55	2	0	41	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240