genome.fa.s24.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  190  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58200339--58200378	7	5.7	7	93	0	71	15	37	0	47	1.45
58203030--58203056	5	5.4	5	100	0	54	22	18	59	0	1.38
58203714--58203785	22	3.4	21	77	7	67	19	0	33	47	1.50
58203710--58203810	42	2.3	43	85	8	134	19	0	30	48	1.56
58203730--58203817	22	4.1	22	77	5	90	15	1	32	50	1.52
58203731--58203823	42	2.2	42	84	0	114	15	1	34	49	1.51
58203801--58203859	21	2.8	21	87	7	75	13	0	35	50	1.42
58203773--58203845	28	2.6	28	84	4	103	13	1	35	49	1.51
58203829--58203860	14	2.2	15	94	5	57	12	0	34	53	1.39
58203851--58203918	21	3.2	21	85	0	100	25	1	27	45	1.62
58204496--58204535	18	2.2	18	90	0	62	42	7	30	20	1.79
58205186--58205214	7	4.1	7	100	0	58	58	13	0	27	1.36
58206423--58206466	11	3.8	12	80	19	58	43	0	31	25	1.55
58207676--58207764	40	2.2	40	87	0	124	32	21	20	25	1.97
58208138--58208186	7	7.0	7	80	0	53	18	2	36	42	1.62
58208132--58208285	14	10.8	14	68	14	73	23	1	29	44	1.64
58208240--58208321	43	1.9	43	89	0	128	17	3	35	43	1.66
58210251--58210467	115	1.9	115	87	1	319	31	17	22	28	1.97
58210062--58210683	201	3.0	209	77	8	563	30	18	22	27	1.97
58210476--58210772	113	2.6	114	78	9	320	29	19	23	27	1.98
58210694--58210856	84	1.9	84	85	4	222	31	23	20	25	1.98
58211203--58211266	14	4.5	14	72	12	51	15	0	37	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58212207--58212274	23	3.0	23	75	16	77	19	41	0	39	1.51
58212209--58212283	25	3.2	23	76	14	82	18	44	0	37	1.50
58212257--58212299	16	2.7	17	82	13	56	16	51	0	32	1.45
58218911--58218996	21	4.1	21	88	5	102	34	18	45	1	1.57
58218915--58218996	42	2.0	42	87	0	119	35	18	45	1	1.57
58219454--58219743	43	6.8	43	85	3	345	23	22	21	32	1.98
58221547--58221738	43	4.5	43	82	2	226	26	16	27	30	1.97
58223825--58223923	40	2.5	39	90	3	153	39	24	21	15	1.91
58223929--58224089	41	3.9	41	79	6	157	23	19	26	31	1.98
58224612--58224771	69	2.3	70	90	6	256	27	0	28	43	1.55
58224739--58224783	7	6.4	7	86	0	54	22	0	44	33	1.53
58224739--58224806	21	3.2	21	75	10	66	23	0	41	35	1.55
58228092--58228212	59	2.1	59	96	0	224	33	4	7	54	1.50
58228390--58228610	43	5.2	43	88	0	309	23	16	32	27	1.96
58240143--58240191	20	2.5	19	86	3	71	28	30	0	40	1.57
58240096--58240232	73	1.9	74	84	7	190	22	31	0	45	1.53
58240143--58240186	20	2.2	20	92	4	72	31	29	0	38	1.58
58240203--58240238	18	1.9	19	94	5	65	25	38	0	36	1.56
58242794--58242886	44	2.1	44	97	0	177	33	3	21	41	1.69
58242794--58242864	22	3.2	22	63	21	58	35	2	21	40	1.68
58242816--58242886	22	3.2	22	65	21	58	32	4	21	42	1.72
58244771--58244817	25	1.9	25	86	4	69	46	14	12	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58246486--58246528	21	2.0	21	95	0	77	13	20	18	46	1.83
58246508--58246616	40	2.7	39	80	6	121	16	16	26	40	1.89
58246507--58246602	40	2.4	39	82	5	122	17	17	25	39	1.91
58248176--58248285	55	2.0	54	80	5	123	20	26	33	19	1.96
58250093--58250146	27	2.0	27	92	0	90	24	11	25	38	1.88
58255973--58256074	52	2.0	51	88	1	150	24	14	31	29	1.95
58259584--58259700	52	2.3	51	89	4	173	27	12	30	29	1.93
58259585--58259700	51	2.2	52	89	4	173	27	12	31	28	1.93
58262906--58262941	17	2.1	18	94	5	65	52	2	22	22	1.59
58265083--58265171	29	3.0	29	78	12	110	50	2	11	35	1.51
58265977--58266009	6	5.5	6	86	13	50	84	0	3	12	0.72
58269007--58269039	17	1.9	17	93	0	57	39	9	27	24	1.85
58269555--58269606	27	1.9	27	100	0	104	40	23	3	32	1.72
58270256--58270298	20	2.2	19	84	12	52	76	0	20	2	0.89
58270267--58270304	19	2.0	20	84	5	51	68	5	26	0	1.11
58287945--58288034	40	2.2	40	80	0	99	37	25	20	16	1.93
58290298--58290488	73	2.6	73	87	0	256	27	23	25	24	2.00
58291550--58291600	24	2.1	24	92	0	84	37	17	23	21	1.94
58298145--58298182	7	5.4	7	96	0	67	57	2	10	28	1.45
58298343--58298418	29	2.6	28	85	6	98	60	1	3	34	1.23
58299846--58299902	28	2.0	28	100	0	114	14	3	24	57	1.52
58302157--58302208	24	2.2	24	80	13	63	46	21	19	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58305633--58305664	7	4.6	7	96	0	55	53	0	0	46	1.00
58305740--58305822	21	3.8	21	77	16	87	36	1	0	62	1.03
58305746--58305826	11	7.2	11	75	15	60	34	1	0	64	1.02
58305743--58305833	11	8.2	11	70	22	57	34	2	0	63	1.06
58305689--58305845	63	2.5	65	74	18	152	33	3	1	61	1.22
58305811--58305847	19	1.9	19	88	0	56	24	5	0	70	1.08
58320415--58320451	2	18.5	2	88	0	56	51	43	0	5	1.24
58337708--58337812	52	2.0	52	88	3	158	39	2	8	49	1.48
58339211--58339239	12	2.3	13	94	5	51	13	24	3	58	1.51
58343083--58343143	30	2.0	30	93	0	104	55	4	16	22	1.60
58347712--58347877	81	2.0	81	98	0	323	53	7	5	34	1.52
58351390--58351554	43	3.9	43	75	12	153	24	18	26	30	1.97
58358632--58358910	26	10.9	25	70	18	175	30	2	2	64	1.23
58358672--58358813	35	3.9	34	70	15	81	31	3	2	62	1.24
58358695--58358736	21	2.0	21	86	4	59	35	2	0	61	1.09
58358638--58358770	51	2.7	48	85	8	144	32	2	1	63	1.15
58358632--58358910	49	5.5	50	74	17	218	30	2	2	64	1.23
58358798--58358920	48	2.5	51	79	12	159	30	3	3	63	1.26
58358822--58358946	48	2.8	43	82	11	146	29	3	4	63	1.28
58362634--58362672	19	2.0	20	90	5	62	28	23	5	43	1.75
58370783--58371216	44	9.7	43	69	15	184	32	16	19	31	1.94
58370778--58371205	225	1.9	225	90	0	687	32	17	18	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58372795--58372945	26	6.1	25	78	8	150	30	2	3	63	1.24
58372801--58373080	26	12.0	22	67	21	83	29	2	3	63	1.25
58372801--58373083	48	6.0	49	72	18	187	29	2	3	63	1.26
58372801--58372968	26	6.8	24	80	11	139	29	2	3	64	1.22
58372925--58373005	38	2.1	38	86	8	121	27	2	3	66	1.21
58372970--58373051	22	3.6	21	72	16	65	26	2	4	65	1.25
58373027--58373073	23	2.1	22	84	4	58	29	4	4	61	1.34
58373067--58373107	17	2.6	16	84	7	57	34	4	0	60	1.18
58376720--58376768	26	2.0	24	84	8	62	63	8	0	28	1.23
58376748--58376799	22	2.4	22	84	9	63	69	7	1	21	1.24
58384883--58385046	27	6.1	27	90	4	242	42	21	17	18	1.90
58386618--58386661	15	3.0	14	83	6	52	54	4	2	38	1.33
58386748--58386903	24	6.4	24	73	6	109	57	7	4	30	1.46
58386996--58387071	3	25.0	3	72	17	59	61	1	3	32	1.22
58386996--58387078	15	6.0	13	77	17	71	63	1	3	31	1.19
58387012--58387065	22	2.2	26	84	12	71	62	0	5	31	1.18
58386997--58387083	12	7.2	11	78	16	59	65	2	3	28	1.21
58386997--58387078	40	2.1	37	82	10	94	64	1	3	30	1.18
58388206--58388241	16	2.3	16	95	4	65	16	0	11	72	1.12
58392697--58393289	292	2.0	292	99	0	1179	36	18	12	32	1.88
58409654--58409703	24	2.1	23	85	3	64	58	4	0	38	1.17
58410062--58410087	9	2.9	9	100	0	52	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58410790--58410916	67	1.9	67	83	6	166	59	3	7	29	1.41
58410958--58411005	17	2.7	19	78	15	57	68	4	4	22	1.24
58411125--58411150	9	2.9	9	100	0	52	69	0	7	23	1.14
58414648--58414711	31	2.1	31	100	0	128	29	26	6	37	1.81
58415876--58416179	113	2.7	112	78	8	321	26	21	23	27	1.99
58415988--58416470	187	2.6	186	83	3	555	26	22	23	27	1.99
58416691--58416784	21	4.3	22	70	17	61	23	0	37	39	1.55
58419330--58419431	31	3.3	31	94	1	170	19	17	22	40	1.92
58420219--58420310	45	2.0	46	83	10	118	47	1	2	48	1.20
58420307--58420392	29	3.1	28	70	14	79	45	2	2	50	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240