genome.fa.s24.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  140  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43578754--43578803	25	2.0	27	84	11	70	30	4	4	62	1.32
43579257--43579287	14	2.2	14	94	0	53	48	12	6	32	1.67
43580157--43580210	19	2.7	19	83	11	63	27	3	22	46	1.69
43584347--43584456	55	2.0	55	98	0	211	23	28	12	35	1.92
43603056--43603498	47	9.3	47	92	2	690	29	29	8	32	1.87
43603056--43603498	143	3.1	143	93	2	721	29	29	8	32	1.87
43609631--43609706	27	2.8	27	81	0	98	35	21	23	19	1.96
43610979--43611026	18	2.8	18	80	20	59	18	10	12	58	1.62
43617454--43617496	19	2.3	19	95	0	77	25	6	34	32	1.83
43627360--43627402	22	2.0	22	86	9	61	20	2	13	62	1.42
43632583--43632939	75	4.8	75	91	0	581	31	27	18	22	1.97
43632766--43632902	42	3.5	42	75	17	175	31	27	18	22	1.97
43645607--43645927	40	8.0	40	88	0	435	14	13	27	44	1.82
43645613--43645968	80	4.5	78	82	5	376	14	14	26	44	1.84
43646639--43646694	20	2.8	20	86	0	67	46	1	30	21	1.62
43649119--43649383	40	6.7	40	85	5	286	26	27	21	24	1.99
43649086--43649383	80	3.7	80	79	9	263	25	27	21	25	1.99
43649315--43649392	40	1.9	41	82	10	97	26	28	20	24	1.99
43656679--43656939	40	6.6	39	83	6	251	26	27	21	24	1.99
43656644--43656939	80	3.7	80	77	11	254	25	28	20	25	1.99
43656871--43656948	40	1.9	41	82	10	97	26	28	20	24	1.99
43675211--43675240	13	2.3	13	94	0	51	33	3	13	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43675335--43675577	50	4.8	50	91	0	369	25	23	30	20	1.98
43704711--43704755	20	2.2	20	92	0	72	37	17	22	22	1.94
43704740--43704795	20	2.8	19	81	5	58	33	14	32	19	1.92
43707819--43707868	18	2.6	19	87	9	66	4	20	2	74	1.08
43707825--43707868	19	2.4	17	82	14	52	4	18	2	75	1.09
43716375--43716553	85	2.1	85	98	0	349	37	8	27	26	1.85
43717815--43718268	47	9.6	47	91	3	666	33	9	29	27	1.88
43718119--43718240	22	5.3	22	62	21	61	33	11	29	25	1.91
43720825--43721185	40	9.1	40	91	0	544	24	21	28	26	1.99
43722440--43722618	85	2.1	85	98	0	349	37	8	27	26	1.85
43723880--43724333	47	9.6	47	90	3	630	33	9	29	27	1.89
43724184--43724305	22	5.3	22	62	21	61	33	11	29	25	1.91
43726468--43726532	33	1.9	34	87	3	96	43	13	9	33	1.76
43730494--43730528	18	1.9	18	100	0	70	37	11	11	40	1.77
43731872--43731946	33	2.2	34	85	2	107	36	8	12	44	1.71
43735134--43735227	39	2.4	39	92	3	154	52	13	14	19	1.75
43741861--43741890	16	1.9	15	93	6	51	20	3	33	43	1.68
43758130--43758357	40	5.7	40	93	1	350	22	27	20	29	1.99
43766632--43766859	40	5.7	40	93	1	350	22	26	21	29	1.99
43773949--43774015	29	2.4	28	82	9	84	68	0	17	13	1.21
43773949--43773991	12	3.3	12	79	17	50	69	0	18	11	1.17
43773971--43774008	18	2.2	17	90	4	58	63	0	15	21	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43779993--43780071	37	2.1	37	90	0	122	25	31	18	24	1.98
43780190--43780461	47	5.7	47	93	2	438	29	29	8	33	1.87
43780190--43780461	96	2.9	96	92	3	437	29	29	8	33	1.87
43780201--43780463	143	1.9	142	90	3	368	29	28	9	32	1.88
43782650--43782828	85	2.1	85	97	0	340	25	27	8	37	1.85
43782659--43782789	41	3.1	41	62	25	92	27	24	6	41	1.80
43784452--43784803	40	8.8	40	92	0	569	26	28	21	24	1.99
43784683--43784795	23	5.4	23	59	23	61	24	27	23	24	2.00
43786019--43786097	37	2.1	37	90	0	122	25	31	18	24	1.98
43786216--43786487	47	5.7	47	93	2	429	29	28	8	33	1.87
43786216--43786487	96	2.9	96	92	3	428	29	28	8	33	1.87
43786227--43786489	143	1.9	142	89	3	359	29	28	9	33	1.88
43788675--43788853	85	2.1	85	97	0	340	25	27	8	37	1.85
43788684--43788814	41	3.1	41	62	25	92	27	24	6	41	1.80
43796132--43796712	304	1.9	304	95	0	1045	34	22	9	33	1.87
43801250--43801299	18	2.5	20	87	9	68	74	2	20	4	1.08
43811522--43812271	395	1.9	395	87	2	1112	36	20	19	23	1.95
43818573--43818606	17	2.0	17	88	11	52	29	14	23	32	1.94
43821658--43821735	38	2.1	38	97	0	147	39	6	26	26	1.80
43822559--43822631	30	2.4	30	100	0	146	34	10	15	39	1.82
43828971--43829156	40	4.7	40	81	11	220	25	26	22	24	2.00
43830734--43830758	11	2.3	11	100	0	50	48	20	16	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43833776--43833832	10	5.9	9	78	15	60	24	29	15	29	1.96
43833777--43833832	20	2.8	20	89	2	87	25	30	16	28	1.96
43836287--43836318	15	2.1	16	94	5	57	71	0	21	6	1.07
43836345--43836384	21	1.9	21	84	0	53	52	5	25	17	1.64
43842454--43842488	7	5.0	7	89	0	52	14	0	40	45	1.45
43844130--43844173	20	2.2	20	95	0	79	25	22	15	36	1.94
43848699--43848754	20	2.8	20	84	10	62	21	33	12	32	1.91
43848740--43848783	20	2.2	20	95	0	79	25	22	15	36	1.94
43858320--43858394	33	2.2	34	90	2	116	42	12	8	37	1.71
43864244--43864301	30	1.9	30	86	6	82	41	8	20	29	1.82
43864637--43864917	97	2.9	100	79	7	292	28	16	25	29	1.96
43864637--43864922	49	5.8	49	73	9	217	28	16	25	29	1.97
43872160--43872491	51	6.6	51	76	7	243	29	15	25	29	1.96
43872160--43872393	102	2.3	102	87	2	328	28	15	26	29	1.96
43872210--43872441	102	2.3	101	83	3	279	28	16	25	29	1.97
43872363--43872485	50	2.5	50	89	1	176	31	15	22	30	1.95
43874735--43874912	27	6.6	27	82	3	187	26	15	29	28	1.96
43874736--43874891	82	1.9	81	85	3	215	26	15	29	28	1.96
43874732--43874912	82	2.2	81	81	2	211	27	15	28	28	1.96
43885032--43885119	33	2.6	34	81	13	103	38	4	13	43	1.65
43886959--43887000	10	3.7	12	81	18	54	71	0	14	14	1.15
43887033--43887104	33	2.2	33	80	9	85	52	11	25	11	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43896855--43896905	25	2.1	24	82	10	59	49	11	17	21	1.79
43897730--43897820	33	2.7	34	81	8	107	45	12	5	37	1.65
43899559--43899597	18	2.2	17	82	13	51	5	17	2	74	1.12
43903776--43904273	47	10.6	47	93	0	780	33	8	28	29	1.86
43903980--43904055	22	3.3	22	66	16	64	32	10	30	26	1.90
43914681--43914733	23	2.3	23	83	9	63	45	11	13	30	1.78
43917543--43917574	15	2.1	15	94	0	55	6	31	0	62	1.20
43920198--43920521	49	6.4	49	73	12	253	23	23	20	31	1.98
43920180--43920620	50	8.8	50	75	10	285	23	25	21	29	1.99
43927997--43928135	49	2.8	50	85	2	190	21	28	21	28	1.99
43931433--43931460	14	2.0	14	100	0	56	35	21	14	28	1.92
43936718--43936826	45	2.4	45	81	6	123	53	11	5	29	1.60
43938383--43938420	18	2.1	18	90	0	58	5	21	0	73	1.02
43944089--43944183	25	3.8	25	71	13	70	29	18	26	25	1.98
43944348--43944378	15	2.1	15	100	0	62	48	6	0	45	1.28
43952884--43952934	20	2.6	20	84	3	68	5	15	3	74	1.16
43952858--43952925	20	3.5	19	75	21	61	7	17	1	73	1.13
43952884--43952934	19	2.5	21	78	15	63	5	15	3	74	1.16
43963870--43963923	25	2.2	25	80	12	58	38	3	1	55	1.28
43967101--43967215	60	1.9	60	100	0	230	41	13	13	31	1.83
43973933--43973982	21	2.4	21	96	0	91	30	6	38	26	1.80
43978747--43978847	40	2.6	40	82	3	116	37	4	7	49	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43983031--43983109	37	2.1	37	88	4	115	24	30	20	25	1.98
43983228--43983591	47	7.6	47	89	4	548	28	30	8	32	1.87
43983228--43983591	145	2.5	142	90	3	550	28	30	8	32	1.87
43983228--43983591	192	1.9	192	93	0	620	28	30	8	32	1.87
43987141--43987295	40	3.9	40	80	3	143	25	27	23	23	2.00
43987607--43987685	29	2.7	29	86	5	106	27	32	15	24	1.95
43989592--43989670	37	2.1	37	88	4	115	25	30	18	25	1.98
43989789--43990246	47	9.6	47	92	3	736	29	29	8	32	1.87
43989800--43990234	145	3.0	145	91	4	707	29	29	8	31	1.88
43989789--43990246	192	2.4	188	91	2	736	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240