genome.fa.s24.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  44  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15145944--15146089	44	3.2	44	66	17	107	43	15	14	26	1.85
15145951--15146109	50	3.3	48	68	19	134	44	17	11	26	1.84
15145910--15146113	94	2.2	94	90	0	327	42	17	13	26	1.86
15147610--15147646	19	2.0	18	89	5	56	21	0	2	75	0.92
15149084--15149150	30	2.2	31	81	7	75	61	2	8	26	1.41
15151134--15151177	21	2.1	21	100	0	88	43	31	15	9	1.79
15153472--15154214	378	2.0	378	98	0	1443	41	17	16	24	1.90
15154198--15154229	15	2.1	15	94	0	55	31	15	0	53	1.43
15154862--15155008	64	2.3	64	97	0	285	41	13	8	36	1.76
15158577--15158629	21	2.5	21	93	0	88	30	39	9	20	1.84
15159623--15159662	18	2.2	18	86	8	55	67	12	0	20	1.22
15159745--15159807	30	2.1	30	87	0	90	55	12	4	26	1.57
15160246--15160297	20	2.7	20	81	3	70	53	1	0	44	1.11
15171811--15171837	13	2.1	13	100	0	54	40	22	7	29	1.81
15173987--15174024	11	3.3	12	82	14	53	36	0	0	63	0.95
15175217--15175297	31	2.6	31	84	0	108	27	23	14	34	1.94
15175754--15175810	30	1.9	30	85	7	80	47	14	7	31	1.70
15195591--15195629	19	2.1	19	100	0	78	56	15	5	23	1.59
15196011--15196051	20	2.0	21	86	13	59	58	0	7	34	1.26
15203985--15204053	17	4.2	16	70	18	61	75	2	2	18	1.06
15203992--15204057	21	3.1	21	74	18	57	75	1	3	19	1.01
15204169--15204236	5	13.2	5	71	22	52	76	1	1	20	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15204166--15204230	15	4.3	15	77	11	71	75	1	1	21	0.97
15204161--15204236	30	2.5	30	80	6	82	75	1	2	21	1.00
15204188--15204230	22	2.0	22	86	9	61	76	2	0	20	0.89
15204321--15204437	61	1.9	61	87	0	171	13	33	21	31	1.92
15214610--15214721	49	2.3	49	81	7	129	19	17	31	31	1.95
15226698--15226784	44	2.0	44	93	0	147	31	12	17	39	1.87
15230473--15230581	51	2.2	49	78	15	116	21	16	29	33	1.95
15230369--15230555	76	2.4	76	77	2	196	29	16	21	32	1.95
15230453--15230557	25	4.2	26	75	11	94	26	16	25	31	1.96
15244862--15244923	29	2.2	28	88	2	88	50	12	9	27	1.72
15247357--15247537	22	8.2	21	81	8	92	43	18	8	29	1.80
15247365--15247540	44	4.0	44	87	0	253	43	17	9	29	1.80
15247371--15247540	88	1.9	88	93	0	295	42	17	8	30	1.80
15251569--15251602	5	6.6	5	96	3	59	35	41	2	20	1.68
15252469--15252501	16	2.1	16	100	0	66	27	12	18	42	1.85
15256012--15256419	213	1.9	213	98	0	798	28	9	24	37	1.86
15256688--15256847	44	3.5	44	84	9	212	31	16	24	28	1.96
15256735--15256851	51	2.3	51	89	0	180	33	15	24	26	1.95
15258023--15258109	44	2.0	44	100	0	174	31	20	16	32	1.94
15258067--15258249	91	2.0	89	91	2	294	31	28	13	26	1.94
15286430--15286458	4	7.2	4	100	0	58	24	0	0	75	0.80
15290605--15290672	33	2.1	33	97	0	127	38	20	4	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15296340--15296386	21	2.2	22	92	3	78	21	19	38	21	1.94
15298872--15298910	20	2.0	20	84	0	51	33	12	15	38	1.85
15300209--15300258	25	2.0	25	84	11	66	58	12	0	30	1.34
15314496--15314540	22	2.1	21	91	4	72	0	33	2	64	1.06
15314606--15314681	27	2.8	28	90	4	113	19	38	25	17	1.93
15315943--15316001	29	2.0	30	83	9	77	45	3	0	50	1.18
15316378--15316425	24	2.1	23	84	7	62	31	10	2	56	1.45
15318801--15318834	11	3.1	11	100	0	68	26	17	29	26	1.98
15320001--15320095	35	2.7	35	98	0	181	31	2	0	66	1.04
15324290--15324379	42	2.2	41	82	7	103	18	28	28	23	1.98
15327201--15327238	15	2.4	17	86	8	53	60	2	0	36	1.11
15331757--15331794	20	1.9	20	88	0	58	31	7	10	50	1.66
15331886--15331937	18	2.7	20	74	17	56	36	3	0	59	1.16
15333435--15333476	17	2.4	18	80	11	52	59	2	2	35	1.23
15333380--15333488	39	2.7	39	72	13	105	56	2	2	37	1.28
15333436--15333499	23	3.0	21	76	10	60	60	1	1	35	1.15
15342275--15342318	24	1.9	24	90	9	74	36	0	2	61	1.09
15342418--15342445	9	3.1	9	100	0	56	57	10	0	32	1.33
15342388--15342588	59	3.1	68	84	13	307	45	8	4	40	1.57
15342577--15342618	16	2.6	16	92	0	66	42	7	2	47	1.43
15342592--15342647	23	2.5	23	82	2	69	44	1	1	51	1.22
15343318--15343359	21	2.0	20	86	13	59	40	9	0	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15343323--15343364	19	2.2	18	84	16	50	35	7	0	57	1.26
15346428--15346456	15	2.0	15	93	6	51	51	0	13	34	1.42
15352408--15352450	17	2.5	17	81	7	52	53	2	2	41	1.26
15354533--15354677	46	3.2	46	92	4	240	30	18	16	34	1.93
15357716--15357742	12	2.2	12	100	0	54	29	0	48	22	1.51
15366766--15366882	59	2.0	59	91	0	189	27	11	8	52	1.67
15367816--15367859	18	2.3	20	88	7	65	34	0	2	63	1.07
15380742--15380804	28	2.2	28	97	2	117	7	38	3	50	1.47
15384495--15384537	8	4.9	9	81	13	54	65	2	0	32	1.06
15384693--15384724	13	2.5	13	100	0	64	71	6	6	15	1.26
15386250--15386389	49	2.9	49	83	2	165	26	27	22	24	2.00
15387835--15387868	3	11.3	3	100	0	68	67	0	0	32	0.91
15398834--15400091	642	1.9	647	89	4	1961	32	13	12	40	1.83
15400107--15400159	13	4.1	13	85	0	79	28	7	28	35	1.84
15412295--15412329	18	2.0	17	88	5	52	62	0	0	37	0.95
15427224--15427273	25	2.0	25	88	4	73	54	8	8	30	1.58
15434405--15434447	22	2.0	22	86	9	61	30	0	2	67	1.03
15435591--15435634	7	5.7	7	80	19	52	79	0	0	20	0.73
15435585--15435634	25	2.0	25	100	0	100	72	0	0	28	0.86
15439453--15439508	20	2.9	19	75	15	60	66	0	1	32	1.03
15440855--15440908	19	2.8	19	88	0	81	38	9	14	37	1.79
15440855--15440934	19	3.9	21	82	8	78	37	7	16	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15447871--15448369	132	3.8	132	92	1	804	28	17	24	29	1.97
15448694--15448766	19	3.8	19	88	0	119	39	8	15	36	1.77
15448745--15448802	22	2.7	23	78	7	59	37	5	15	41	1.70
15454821--15455349	197	2.7	195	86	3	711	40	17	15	27	1.89
15460880--15460910	15	2.1	15	100	0	62	67	0	6	25	1.14
15464674--15464706	15	2.2	15	94	0	57	30	48	3	18	1.63
15468019--15468122	22	4.4	23	82	9	113	40	20	24	15	1.90
15470137--15470195	31	1.9	31	86	6	84	50	3	8	37	1.49
15470580--15470622	22	2.0	22	85	0	59	55	9	13	20	1.66
15472260--15472296	19	2.0	19	94	5	67	32	21	8	37	1.83
15479761--15479795	18	1.9	18	94	0	61	40	0	0	60	0.97
15484715--15484881	44	3.7	46	76	15	170	44	2	2	50	1.28
15484703--15484925	47	4.9	44	73	16	159	45	3	3	47	1.34
15484701--15484915	91	2.4	91	90	0	340	46	3	3	46	1.35
15484922--15485331	120	3.4	120	96	2	736	44	2	5	48	1.39
15484996--15485300	57	5.1	59	65	23	197	43	2	6	47	1.42
15485283--15485322	19	2.2	19	90	4	64	45	0	0	55	0.99
15485439--15485473	18	2.0	17	88	5	52	45	0	0	54	0.99
15485274--15485586	156	2.0	156	95	2	567	47	5	3	44	1.42
15485706--15485744	16	2.4	16	86	0	51	28	33	2	35	1.71
15485719--15485775	16	3.6	16	95	0	87	33	36	0	29	1.58
15505479--15505509	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15505543--15505592	23	2.3	23	86	6	68	26	8	14	52	1.68
15506038--15506088	24	2.1	25	82	10	61	54	3	3	37	1.37
15508373--15508622	133	1.9	133	90	0	401	30	19	19	30	1.96
15510710--15510810	48	2.1	48	81	7	116	46	3	45	3	1.40
15512012--15512073	31	2.0	31	100	0	124	32	12	16	38	1.86
15517395--15517439	23	2.0	22	82	4	54	46	0	0	53	1.00
15530385--15530462	39	2.0	39	100	0	156	41	10	7	41	1.68
15532717--15532770	26	2.1	26	100	0	108	40	11	7	40	1.69
15536317--15536384	30	2.3	31	80	16	83	52	1	1	44	1.19
15537724--15537772	21	2.3	21	92	0	80	24	28	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240