genome.fa.s24.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  175  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54195701--54195759	21	2.8	20	80	14	57	54	3	1	40	1.27
54195741--54195807	12	5.3	12	75	16	64	58	0	4	37	1.19
54195750--54195837	17	4.8	18	71	19	65	57	0	2	39	1.11
54195732--54195825	40	2.3	41	90	5	156	61	0	3	35	1.12
54195750--54195826	9	8.1	9	76	15	59	58	0	2	38	1.12
54208377--54208424	3	16.0	3	100	0	96	66	0	33	0	0.92
54208652--54208934	41	6.8	40	74	8	194	19	23	23	33	1.97
54213627--54213854	43	5.4	42	83	7	257	25	24	20	29	1.99
54213627--54213837	85	2.5	86	87	6	288	25	24	19	30	1.98
54218196--54218262	23	3.0	22	85	14	86	41	0	1	56	1.08
54218202--54218276	21	3.5	20	84	14	80	44	0	0	56	0.99
54218207--54218277	19	3.4	19	77	15	61	45	0	0	54	0.99
54218338--54218374	18	2.0	19	89	5	58	32	8	0	59	1.27
54219525--54219832	90	3.4	90	87	0	447	51	14	7	26	1.69
54222430--54222479	18	2.7	18	84	3	64	42	0	18	40	1.50
54223207--54223425	112	2.0	111	85	4	298	31	19	20	28	1.97
54226332--54226428	30	3.2	30	78	8	108	22	24	22	29	1.99
54229329--54229409	40	2.0	40	97	0	153	27	23	9	39	1.86
54229694--54229722	8	3.6	8	100	0	58	51	0	0	48	1.00
54229685--54229829	29	4.9	29	76	17	95	57	2	0	40	1.15
54229685--54229829	28	4.9	28	77	16	109	57	2	0	40	1.15
54229745--54229781	16	2.2	16	90	9	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54229699--54229806	57	1.9	56	81	9	130	57	0	0	40	1.11
54229694--54229809	8	12.7	9	71	22	50	56	0	0	41	1.11
54229698--54229820	57	2.1	57	78	12	128	56	1	0	41	1.15
54229883--54229931	12	4.4	12	78	17	61	69	6	0	24	1.11
54229879--54229964	21	4.0	21	77	15	95	67	4	1	26	1.17
54229922--54229954	7	4.6	7	92	7	57	69	0	3	27	1.03
54229922--54229954	15	2.3	14	94	5	57	69	0	3	27	1.03
54231365--54231390	7	3.7	7	100	0	52	30	15	15	38	1.88
54234736--54234775	19	2.0	20	85	14	55	62	2	12	22	1.42
54236111--54237510	94	14.9	94	81	5	1299	29	18	18	32	1.95
54236249--54236331	43	1.9	43	80	9	98	33	20	15	30	1.94
54236156--54237494	50	28.5	44	65	20	242	30	19	18	32	1.95
54236156--54237510	188	7.2	188	85	3	1463	29	18	18	32	1.95
54239608--54239646	17	2.3	17	86	0	51	46	2	2	48	1.29
54247255--54247406	74	2.1	74	93	0	259	59	6	17	15	1.56
54248080--54248129	3	16.7	3	100	0	100	0	32	0	68	0.90
54248383--54248446	32	2.0	32	93	6	112	50	9	15	25	1.74
54254676--54254714	16	2.6	14	92	8	60	51	0	2	46	1.14
54259823--54259923	30	3.3	29	71	16	89	51	7	8	31	1.62
54260918--54260948	5	6.2	5	92	0	53	41	16	19	22	1.89
54261290--54261330	18	2.3	19	79	12	50	53	0	2	43	1.13
54261974--54262010	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54265548--54265574	7	3.9	7	100	0	54	70	0	0	29	0.88
54268801--54268831	9	3.4	9	100	0	62	61	0	0	38	0.96
54279556--54279623	21	3.1	21	77	8	66	54	10	23	11	1.67
54289527--54289569	21	2.0	21	90	0	68	27	6	16	48	1.71
54296739--54296884	41	3.6	41	90	5	217	30	25	18	26	1.98
54296739--54296905	41	4.1	40	87	8	173	29	24	17	27	1.98
54299491--54299551	17	3.6	17	76	10	63	65	1	0	32	1.02
54303522--54303809	105	2.7	108	83	8	367	29	15	9	45	1.77
54309917--54309953	19	1.9	20	88	5	58	48	0	5	45	1.25
54310783--54310815	16	2.1	16	100	0	66	36	6	36	21	1.78
54311049--54311083	18	2.0	17	88	5	52	54	0	0	45	0.99
54311029--54311455	120	3.7	117	83	10	514	46	4	3	45	1.40
54311029--54311313	61	4.8	58	67	11	182	47	4	3	44	1.40
54311167--54311203	16	2.2	17	86	13	51	54	0	2	43	1.14
54311263--54311637	91	4.0	91	86	8	438	46	2	3	46	1.35
54311340--54311637	91	3.3	91	95	0	515	45	3	3	46	1.37
54311331--54311637	44	6.7	47	69	17	207	45	3	3	46	1.37
54316085--54316190	53	2.0	53	94	0	185	59	15	19	5	1.56
54317662--54317710	26	2.0	26	84	8	66	28	0	6	65	1.16
54320492--54320516	5	5.0	5	100	0	50	0	20	60	20	1.37
54320706--54320753	17	2.9	16	79	11	53	70	0	29	0	0.87
54320839--54321058	80	2.7	81	89	6	286	31	0	13	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54320882--54320930	21	2.3	22	89	7	82	28	2	10	59	1.41
54320968--54321004	19	1.9	19	100	0	74	35	0	16	48	1.46
54320865--54321058	80	2.4	81	93	4	329	30	0	13	55	1.43
54321411--54321443	15	2.2	15	100	0	66	33	6	27	33	1.81
54324073--54324141	27	2.6	27	79	4	77	23	36	18	21	1.95
54329230--54329358	51	2.5	51	81	9	131	22	17	27	32	1.96
54343866--54344037	83	2.1	81	84	6	226	47	11	12	29	1.75
54343828--54344038	77	2.6	77	82	5	215	47	11	12	27	1.76
54344070--54344263	86	2.2	84	78	9	194	45	7	11	35	1.69
54344211--54344336	65	1.9	66	85	1	173	46	7	7	37	1.62
54344992--54345045	20	2.7	20	82	0	63	55	7	3	33	1.45
54346178--54346215	18	2.2	18	85	4	51	50	5	2	42	1.39
54355459--54355540	25	3.3	24	72	13	67	31	18	28	21	1.97
54371684--54371710	13	2.1	13	100	0	54	70	14	0	14	1.17
54376777--54376844	19	3.1	23	63	18	54	54	5	4	35	1.45
54377557--54377588	15	2.1	16	94	5	57	43	9	6	40	1.62
54379788--54379818	14	2.1	15	94	5	55	70	0	0	29	0.87
54386844--54386941	36	2.7	35	79	6	106	29	20	10	39	1.85
54386844--54387201	73	4.9	73	78	9	322	26	21	15	37	1.92
54386876--54387171	146	2.0	145	83	7	368	25	21	15	37	1.93
54386876--54387201	36	8.9	36	78	10	306	25	21	15	37	1.93
54386883--54387208	109	3.0	105	77	13	295	24	21	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54387895--54387926	13	2.5	13	100	0	64	40	9	31	18	1.83
54388691--54388743	18	2.7	21	72	22	60	24	26	3	45	1.70
54388697--54388741	18	2.5	19	82	10	67	24	24	4	46	1.71
54396987--54397023	17	2.1	19	85	10	51	35	2	16	45	1.61
54398758--54398805	25	1.9	25	83	8	62	35	12	16	35	1.87
54405313--54405348	18	2.0	18	94	0	63	41	0	16	41	1.48
54412722--54412818	28	3.5	28	91	1	151	26	22	26	23	2.00
54413157--54413287	27	4.9	26	76	10	113	18	16	18	46	1.84
54413157--54413295	54	2.6	53	82	11	149	18	16	17	46	1.84
54417169--54417215	16	2.7	17	80	9	51	53	6	6	34	1.52
54418786--54419507	44	16.7	43	71	13	202	29	23	18	28	1.98
54418955--54419417	43	10.7	43	69	11	216	30	22	17	28	1.97
54418708--54419119	216	1.9	217	90	0	664	30	23	18	27	1.98
54418821--54419463	172	3.7	172	87	3	888	29	23	18	28	1.98
54418708--54419233	216	2.4	217	83	4	562	30	23	18	28	1.97
54419041--54419505	89	5.4	86	71	14	355	29	23	18	28	1.98
54427705--54427742	19	2.0	20	84	5	51	39	10	5	44	1.61
54431210--54431274	23	2.9	23	75	8	62	69	7	3	20	1.27
54431317--54431382	16	4.2	16	76	3	55	77	7	3	12	1.09
54431519--54431565	16	2.7	17	80	9	51	53	6	6	34	1.52
54438847--54438883	18	2.1	18	90	10	58	54	10	27	8	1.63
54442747--54443165	76	5.5	75	80	2	401	34	21	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54442859--54442998	36	3.8	36	69	11	113	32	22	21	23	1.98
54442741--54443166	151	2.8	152	83	1	498	34	21	18	25	1.96
54446403--54446464	28	2.2	28	94	0	106	19	11	45	24	1.83
54457505--54457547	17	2.4	18	80	11	52	13	20	44	20	1.86
54457897--54458229	27	12.4	27	73	10	216	39	19	19	20	1.93
54457946--54458175	54	4.2	54	81	3	239	38	19	21	20	1.94
54457897--54458175	81	3.5	81	83	6	300	39	20	20	20	1.93
54458258--54458343	24	3.6	23	81	12	84	23	9	19	47	1.78
54458275--54458356	24	3.4	24	87	0	110	23	8	20	47	1.77
54458497--54458589	32	2.9	32	86	0	132	21	20	20	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240