genome.fa.s24.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  179  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55327517--55327560	19	2.3	20	84	7	56	27	20	11	40	1.86
55329647--55329701	9	6.3	9	91	8	96	78	10	0	10	0.98
55329648--55329701	17	3.2	17	94	5	92	77	11	0	11	0.99
55329647--55329701	26	2.1	26	100	0	110	78	10	0	10	0.98
55330685--55330731	21	2.2	21	92	0	76	27	10	36	25	1.89
55331816--55332413	88	6.7	88	90	3	860	27	23	23	24	2.00
55331816--55332312	270	1.8	270	95	0	895	27	24	24	23	2.00
55332414--55333035	175	3.6	175	93	0	983	31	19	20	28	1.97
55332580--55333037	85	5.3	84	69	13	255	30	19	21	27	1.98
55332871--55333164	129	2.3	129	93	0	498	29	18	22	28	1.97
55333002--55333344	88	4.0	84	73	8	294	31	18	21	28	1.97
55333000--55333339	175	1.9	175	92	0	563	30	18	21	28	1.97
55333175--55333430	129	2.0	129	94	0	449	32	18	21	28	1.97
55333175--55333495	129	2.5	129	88	1	437	30	20	20	29	1.97
55332696--55333438	304	2.4	304	95	0	1324	30	19	21	28	1.97
55335628--55335669	21	2.0	21	100	0	84	42	4	9	42	1.58
55336092--55336151	18	3.4	17	81	11	59	30	5	1	63	1.25
55336115--55336182	3	22.3	3	77	14	68	29	5	2	61	1.34
55336220--55336255	16	2.2	17	95	5	65	50	0	0	50	1.00
55339772--55340343	286	2.0	286	94	0	1002	36	15	19	28	1.93
55350220--55350288	6	10.7	6	75	20	59	81	7	1	10	0.94
55350220--55350289	13	5.3	13	80	10	79	81	7	1	10	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55350220--55350312	7	13.7	7	71	17	54	81	6	3	8	0.96
55350225--55350262	18	2.1	18	95	5	67	84	5	0	10	0.77
55350220--55350311	29	3.1	29	76	6	78	82	6	3	7	0.93
55350314--55350387	3	24.7	3	72	10	53	62	6	4	27	1.39
55350310--55350348	12	3.2	12	88	3	60	58	10	0	30	1.31
55350358--55350408	18	2.9	18	83	13	54	66	5	5	21	1.35
55350532--55350585	15	3.6	14	83	14	63	74	0	3	22	0.98
55352171--55352252	30	2.7	30	75	0	74	23	30	30	15	1.96
55355906--55355978	18	4.1	18	73	3	58	42	16	20	20	1.89
55363575--55363676	47	2.3	43	84	6	123	60	5	5	27	1.43
55363757--55363789	15	2.2	15	100	0	66	48	6	6	39	1.53
55363841--55363880	20	2.0	20	100	0	80	55	0	20	25	1.44
55371273--55371317	17	2.6	17	93	6	74	73	0	0	26	0.84
55371268--55371314	10	5.0	10	77	15	55	68	0	0	31	0.90
55374898--55375344	171	2.6	170	92	1	725	31	12	14	41	1.83
55377673--55377712	14	3.1	14	80	20	52	50	5	22	22	1.68
55381427--55381467	21	2.0	20	85	4	55	56	14	0	29	1.39
55386733--55386992	45	5.7	45	72	13	129	30	18	24	26	1.98
55386643--55387135	181	2.7	180	83	7	572	31	17	22	28	1.97
55386693--55387251	44	12.4	44	71	12	298	30	17	22	29	1.97
55386667--55387141	182	2.6	180	84	6	563	31	17	22	29	1.96
55389225--55389303	26	3.1	26	81	1	97	24	6	10	59	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55399726--55399770	16	2.6	17	86	6	56	73	2	0	24	0.95
55399742--55399779	16	2.4	16	82	4	51	68	2	2	26	1.16
55413373--55413991	171	3.6	171	94	0	1033	31	12	14	41	1.83
55424419--55425109	44	15.3	45	71	12	391	31	18	21	29	1.97
55424326--55424987	44	14.8	43	71	12	406	30	18	21	29	1.97
55424329--55424981	181	3.6	180	80	8	575	30	18	21	29	1.97
55424399--55424861	182	2.6	183	83	5	532	31	17	21	29	1.96
55425428--55425457	15	2.0	15	93	0	51	56	13	6	23	1.60
55426396--55426424	10	2.7	11	89	10	51	17	6	0	75	1.01
55426491--55426519	8	3.6	8	100	0	58	44	0	0	55	0.99
55426923--55427001	26	3.1	26	79	1	88	24	7	10	58	1.57
55437395--55437432	16	2.4	16	82	4	51	68	2	2	26	1.16
55441012--55441456	169	2.6	170	88	3	664	32	12	13	41	1.82
55450315--55450339	13	1.9	13	100	0	50	28	8	16	48	1.74
55460550--55460611	30	2.0	31	81	9	74	22	40	0	37	1.54
55460889--55460927	19	2.2	18	90	9	62	20	35	0	43	1.52
55467131--55467342	42	5.5	41	71	21	188	22	17	27	32	1.96
55467173--55467381	33	5.8	32	71	21	130	20	19	27	33	1.96
55467094--55467379	75	3.8	75	90	2	441	22	18	27	32	1.97
55474630--55474860	102	2.3	102	93	1	401	19	18	29	32	1.96
55475982--55476072	11	7.9	11	67	13	58	60	0	3	36	1.13
55476009--55476080	37	1.9	38	91	2	119	62	0	4	33	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55478074--55478123	18	2.8	17	73	8	55	42	0	4	54	1.19
55479455--55479500	22	2.1	22	100	0	92	21	23	0	54	1.45
55481415--55481470	24	2.3	24	90	0	94	16	3	35	44	1.65
55486177--55486220	18	2.5	17	78	7	61	61	0	4	34	1.16
55505309--55505473	90	1.8	90	98	0	321	32	10	27	28	1.91
55510760--55510971	40	5.3	40	86	3	268	23	20	27	28	1.99
55519795--55519853	30	2.0	30	83	12	77	28	27	15	28	1.96
55519759--55519888	66	2.0	66	80	6	147	31	26	13	29	1.93
55527179--55527206	10	2.8	10	100	0	56	53	17	10	17	1.72
55534856--55534903	17	2.8	17	87	6	62	29	0	2	68	1.01
55549827--55550072	44	5.6	42	75	8	192	28	22	20	28	1.99
55549827--55550081	88	2.9	89	84	2	361	28	21	20	29	1.98
55549980--55550430	182	2.5	180	81	6	493	29	22	16	31	1.96
55549951--55550408	181	2.5	179	80	6	487	29	22	16	31	1.96
55555062--55555119	22	2.7	21	84	7	80	32	3	18	44	1.67
55555072--55555116	23	2.0	22	91	4	72	31	4	17	46	1.68
55560208--55560265	22	2.7	21	84	7	80	32	3	18	44	1.67
55560218--55560262	23	2.0	22	91	4	72	31	4	17	46	1.68
55564064--55564267	43	4.7	43	92	2	329	27	31	18	22	1.97
55564466--55564525	18	3.4	18	64	13	52	40	10	6	43	1.64
55570199--55570223	13	1.9	13	100	0	50	32	8	4	56	1.47
55570686--55570749	21	3.0	21	81	6	67	34	40	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55570831--55570860	7	4.3	7	100	0	60	26	60	0	13	1.34
55571466--55571750	41	7.0	41	88	0	408	29	28	22	19	1.98
55571791--55571919	40	3.3	39	83	5	152	20	21	23	34	1.97
55572634--55572676	20	2.2	20	86	0	59	44	2	0	53	1.13
55572904--55572942	18	2.2	18	86	4	53	38	10	12	38	1.78
55572744--55573191	171	2.6	170	92	2	729	40	14	12	31	1.84
55573070--55573113	18	2.5	18	81	3	54	40	6	13	38	1.71
55576216--55576412	98	2.0	98	93	0	340	37	23	9	28	1.87
55577843--55577940	21	4.7	21	74	18	78	39	17	6	36	1.74
55577843--55577900	22	2.6	22	84	7	73	43	17	3	36	1.66
55577879--55577972	19	4.8	19	87	5	134	35	18	10	36	1.85
55577944--55578039	47	2.0	47	100	0	192	34	20	8	36	1.83
55578248--55579032	132	5.9	132	93	0	1293	30	23	18	27	1.98
55578486--55578944	44	10.4	44	64	18	159	29	23	17	29	1.97
55581570--55581623	27	2.0	27	100	0	108	25	11	14	48	1.77
55584274--55584470	98	2.0	98	97	0	376	37	24	9	27	1.87
55585325--55585385	25	2.5	25	82	12	74	59	6	1	32	1.33
55585901--55585998	21	4.7	21	74	18	78	39	17	6	36	1.74
55585901--55585958	22	2.6	22	84	7	73	43	17	3	36	1.66
55585937--55586030	19	4.8	19	87	5	134	36	17	9	37	1.82
55591045--55591795	44	16.7	44	69	10	320	28	21	18	31	1.97
55591259--55591743	182	2.7	182	81	4	534	28	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55599797--55599840	18	2.5	18	81	3	54	40	9	13	36	1.76
55599642--55600259	171	3.6	171	93	0	1015	41	14	12	31	1.84
55599968--55600011	18	2.5	18	81	3	54	40	9	13	36	1.76
55600144--55600182	18	2.2	18	86	4	53	38	10	12	38	1.78
55609070--55609122	28	1.9	28	88	3	81	24	16	7	50	1.71
55609071--55609136	28	2.4	28	82	7	73	27	18	7	46	1.75
55609757--55609833	22	3.4	22	67	19	68	36	25	2	35	1.70
55609744--55609838	46	2.1	46	100	0	190	41	23	2	33	1.66
55614329--55614405	22	3.4	22	67	19	68	36	25	2	35	1.70
55614316--55614410	46	2.1	46	100	0	190	41	23	2	33	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240