genome.fa.s24.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  97  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30399528--30399552	13	1.9	13	100	0	50	24	0	20	56	1.43
30399504--30399619	44	3.1	36	83	16	123	25	0	23	50	1.49
30399537--30399731	23	8.7	22	72	17	152	25	1	26	47	1.58
30399605--30399737	68	2.0	68	90	3	214	24	1	28	45	1.62
30399777--30399824	25	1.9	25	100	0	96	39	14	0	45	1.45
30399768--30399824	25	2.3	26	90	3	82	45	12	0	42	1.41
30400255--30400292	18	2.1	18	95	0	67	39	7	28	23	1.83
30400943--30400967	7	3.6	7	100	0	50	60	12	0	28	1.32
30401138--30401175	20	1.9	20	84	10	51	55	7	2	34	1.43
30402068--30402110	11	3.8	11	78	6	50	60	0	0	39	0.97
30402117--30402147	11	2.8	11	90	0	53	51	6	22	19	1.69
30402155--30402190	11	3.2	11	92	4	54	41	0	38	19	1.52
30409036--30409067	5	6.6	5	92	7	57	62	0	0	37	0.95
30409580--30409662	17	4.4	19	70	19	66	62	2	2	32	1.21
30409580--30409662	10	8.8	9	71	18	62	62	2	2	32	1.21
30410346--30410416	32	2.3	32	90	4	110	45	9	12	32	1.75
30412958--30413025	29	2.3	29	85	5	93	27	30	13	27	1.94
30412847--30413174	174	1.9	174	95	0	593	30	23	14	30	1.95
30413127--30413205	29	2.7	30	82	13	110	30	30	13	25	1.94
30415803--30415842	21	1.9	21	90	10	64	40	5	5	50	1.46
30415808--30415849	11	3.8	11	78	9	50	38	4	4	52	1.44
30415803--30415852	21	2.3	21	80	12	57	40	4	4	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30417725--30417784	22	2.7	23	89	5	79	35	18	21	25	1.96
30417735--30417784	22	2.3	22	96	0	91	32	20	22	26	1.98
30434209--30434238	15	1.9	16	93	6	53	26	10	3	60	1.45
30440935--30440977	20	2.2	20	95	0	77	53	2	13	30	1.53
30445239--30445270	15	2.1	15	94	0	55	56	28	6	9	1.55
30455490--30455605	39	3.0	39	87	0	160	35	10	12	42	1.76
30458884--30458920	16	2.4	15	82	8	56	81	2	13	2	0.92
30462610--30462650	19	2.0	20	86	9	57	12	0	7	80	0.90
30464821--30464936	39	3.0	39	88	0	169	34	11	12	42	1.78
30470697--30470768	28	2.6	28	97	0	135	29	25	12	33	1.92
30477941--30478013	37	1.9	37	86	5	101	43	4	5	46	1.45
30480207--30480257	26	2.0	26	96	0	93	29	35	23	11	1.90
30480071--30480336	104	2.6	105	91	3	423	29	30	20	19	1.97
30481089--30481141	19	2.8	19	77	2	63	37	0	1	60	1.08
30482212--30482309	40	2.6	38	72	4	90	31	26	17	24	1.97
30483320--30483370	15	3.4	15	72	20	52	47	1	1	49	1.24
30484385--30484422	3	12.7	3	100	0	76	31	0	0	68	0.90
30492200--30492253	23	2.4	23	87	6	76	59	7	1	31	1.36
30492203--30492273	3	23.3	3	74	8	63	61	5	1	30	1.27
30492738--30492775	11	3.2	12	88	11	60	47	0	52	0	1.00
30493245--30493269	8	3.1	8	100	0	50	24	12	52	12	1.72
30493780--30494525	44	16.8	45	70	15	147	28	22	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30493737--30494480	88	8.4	87	69	15	314	28	22	17	31	1.97
30493704--30494047	188	1.8	187	91	3	575	27	20	18	33	1.96
30493917--30494535	218	2.8	218	96	1	1129	28	22	18	30	1.97
30493925--30494525	88	6.9	87	72	10	388	28	23	17	30	1.97
30506964--30507017	23	2.4	23	87	6	76	59	7	1	31	1.36
30506967--30507037	3	23.3	3	74	8	63	61	5	1	30	1.27
30507501--30507538	11	3.2	12	88	11	60	47	0	52	0	1.00
30508001--30508025	8	3.1	8	100	0	50	24	12	52	12	1.72
30517675--30517774	33	3.2	30	89	9	155	30	4	15	51	1.61
30521330--30521616	69	4.2	68	78	7	222	18	19	25	36	1.95
30521369--30521642	69	4.0	69	77	3	232	20	21	22	35	1.96
30528183--30528220	17	2.2	17	86	9	51	44	18	0	36	1.50
30528146--30528315	89	1.9	89	88	0	259	40	16	12	30	1.86
30529432--30529457	3	8.7	3	100	0	52	30	0	0	69	0.89
30529950--30529997	21	2.3	21	88	0	69	37	2	8	52	1.44
30529950--30530011	21	2.8	21	82	7	61	40	1	8	50	1.42
30533256--30533350	50	1.9	50	84	0	127	32	26	21	20	1.97
30533306--30533451	63	2.3	63	86	0	202	32	30	18	19	1.96
30538087--30538184	12	8.1	12	67	20	53	51	2	4	42	1.32
30538087--30538184	17	5.8	17	68	20	62	51	2	4	42	1.32
30543356--30545436	265	7.9	265	83	2	2476	29	16	16	36	1.91
30543356--30545436	790	2.6	789	85	3	2657	29	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30549606--30549638	17	1.9	17	93	0	57	48	0	12	39	1.40
30549629--30549705	9	8.7	9	81	7	86	44	0	2	53	1.14
30549640--30549705	13	4.9	13	75	5	69	43	0	1	54	1.09
30557073--30557105	16	2.1	16	100	0	66	24	18	12	45	1.83
30558473--30558555	26	3.3	25	78	8	80	39	18	19	22	1.92
30562155--30562221	28	2.3	29	87	7	91	65	0	0	34	0.93
30562184--30562212	11	2.5	12	88	11	51	58	0	0	41	0.98
30566479--30566521	22	2.0	21	81	4	50	60	0	0	39	0.97
30566501--30566553	27	1.9	28	84	3	72	50	1	3	43	1.30
30569429--30569498	18	3.9	18	78	0	77	34	30	10	25	1.89
30569428--30569498	36	2.0	36	85	0	97	33	30	9	25	1.88
30574957--30574999	8	5.5	8	83	5	52	88	4	4	2	0.70
30576048--30576095	21	2.3	21	82	7	62	14	18	6	60	1.55
30577856--30579558	850	2.0	850	94	0	2962	33	16	20	30	1.94
30581501--30581526	11	2.4	11	100	0	52	34	7	0	57	1.27
30581530--30581571	13	3.2	13	80	16	50	21	0	4	73	1.01
30585385--30585434	20	2.5	20	83	9	66	62	4	0	34	1.14
30585509--30585550	19	2.1	21	82	8	52	54	9	2	33	1.46
30585342--30585572	120	1.9	120	80	3	268	51	13	2	32	1.55
30587790--30587823	3	11.3	3	100	0	68	64	0	0	35	0.94
30588211--30588256	19	2.5	18	82	6	56	45	6	2	45	1.41
30589298--30589349	26	1.9	28	88	7	81	65	0	5	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30591186--30591242	23	2.5	24	82	8	82	33	0	7	59	1.24
30594784--30594932	40	3.7	39	81	5	156	39	20	18	21	1.92
30596932--30596987	25	2.2	26	87	9	89	50	0	1	48	1.11
30597902--30598014	41	2.9	38	73	9	102	25	14	25	34	1.94
30603288--30603330	15	3.2	15	69	30	51	46	0	0	53	1.00
30603287--30603334	25	2.0	24	95	4	87	50	0	0	50	1.00
30603348--30603439	27	3.3	27	69	19	73	68	5	23	2	1.22
30607824--30607880	24	2.4	24	96	0	105	19	5	28	47	1.71
30622661--30622696	17	2.1	18	94	5	65	13	38	30	16	1.88
30635205--30635238	16	2.1	17	88	5	52	17	11	14	55	1.68
30639350--30639416	29	2.3	29	86	0	89	22	1	25	50	1.57
30639357--30639402	22	2.1	22	92	8	76	26	2	19	52	1.58
30639544--30639590	22	2.1	22	84	7	60	36	2	27	34	1.69
30639539--30639589	15	3.4	15	81	13	61	33	1	31	33	1.69
30639639--30639684	23	2.0	23	91	0	74	65	2	6	26	1.28
30639805--30640263	115	4.0	115	81	7	473	24	14	20	41	1.89
30639810--30640263	229	2.0	234	82	6	559	24	14	20	40	1.89
30640378--30640405	14	2.0	14	100	0	56	21	28	0	50	1.49
30641933--30641966	13	2.5	13	90	4	50	67	0	2	29	1.05
30642163--30642188	12	2.2	12	100	0	52	38	7	7	46	1.61
30642191--30642248	12	5.2	12	76	16	54	53	12	0	34	1.38
30642203--30643040	9	95.4	9	73	14	569	47	18	1	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30642319--30642399	41	2.0	41	90	0	126	50	20	1	27	1.56
30642432--30642524	29	3.1	29	70	11	89	52	13	3	30	1.57
30642643--30642927	122	2.4	113	88	9	462	46	18	0	34	1.55
30645942--30645992	21	2.5	20	81	9	57	33	13	45	7	1.73
30646423--30646634	85	2.5	85	83	3	259	26	23	18	31	1.97
30646423--30646634	42	5.0	42	85	3	255	26	23	18	31	1.97
30655676--30655702	12	2.2	12	100	0	54	40	11	29	18	1.85
30656970--30657003	17	1.9	17	88	5	50	17	26	38	17	1.92
30662193--30662885	346	2.0	353	84	7	933	35	12	18	33	1.89
30689031--30689060	6	4.8	6	95	4	51	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240