genome.fa.s24.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  202  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61551936--61551970	11	3.2	11	88	11	54	0	54	0	45	0.99
61554676--61555021	47	7.3	47	89	5	436	26	30	10	32	1.89
61554892--61554965	22	3.2	22	66	23	62	24	32	12	31	1.92
61559026--61559094	32	2.2	32	79	7	79	47	1	2	47	1.25
61559098--61559171	11	6.7	11	71	10	53	72	1	21	4	1.08
61559120--61559178	29	2.0	29	83	6	75	69	1	25	3	1.13
61560002--61560142	40	3.6	39	73	10	110	28	17	21	32	1.96
61563639--61563682	14	3.1	15	78	21	51	72	0	6	20	1.07
61563659--61564068	157	2.6	156	88	5	587	55	8	9	26	1.60
61564473--61564542	27	2.6	27	86	0	104	8	31	34	25	1.86
61567220--61567309	43	2.1	43	97	0	171	47	17	6	27	1.73
61570704--61570875	72	2.4	74	81	9	212	39	1	34	25	1.63
61570823--61570873	19	2.7	19	93	3	86	43	0	31	25	1.55
61570824--61570880	19	3.0	19	87	5	53	40	0	31	28	1.57
61573049--61573081	16	2.1	16	100	0	66	18	30	12	39	1.87
61574558--61574625	20	3.4	20	80	8	75	32	8	23	35	1.86
61574551--61574642	40	2.3	40	76	10	98	32	9	22	34	1.87
61575854--61575895	21	2.0	20	90	4	66	7	19	2	71	1.20
61580113--61580148	17	2.1	17	89	5	54	19	2	11	66	1.35
61584143--61584185	21	2.0	21	86	8	61	34	0	6	58	1.25
61585706--61585749	20	2.2	21	88	12	74	43	0	0	56	0.99
61587249--61587287	19	2.0	19	85	5	51	30	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61599113--61599158	23	2.0	23	87	8	67	45	10	0	43	1.39
61599158--61599217	20	2.8	22	78	17	72	43	0	1	55	1.10
61600214--61600272	16	3.7	15	80	8	64	38	1	27	32	1.67
61602488--61602582	26	3.7	26	85	1	129	38	23	11	26	1.89
61606701--61606731	14	2.2	14	94	0	53	67	0	0	32	0.91
61607406--61607451	8	5.6	8	82	14	58	19	0	2	78	0.86
61607407--61607451	17	2.8	16	89	3	63	20	0	2	77	0.87
61608695--61608946	72	3.5	72	90	4	382	31	18	17	32	1.94
61608881--61609124	88	2.8	89	83	6	291	35	20	16	27	1.94
61609344--61609697	75	4.8	73	82	7	376	34	18	15	31	1.92
61609344--61609690	146	2.3	147	82	6	414	34	19	15	31	1.93
61609697--61609871	70	2.5	70	84	4	203	33	22	14	29	1.94
61622679--61622959	140	2.0	141	93	3	478	40	13	15	30	1.86
61623733--61623762	15	2.0	15	93	0	51	33	3	6	56	1.42
61623860--61623914	23	2.4	24	82	8	62	27	0	5	67	1.12
61626536--61626562	13	2.1	13	100	0	54	22	22	14	40	1.90
61630024--61630062	19	2.1	19	100	0	78	20	20	15	43	1.88
61633137--61633176	16	2.5	16	91	0	62	32	27	2	37	1.70
61638227--61638267	21	2.0	21	85	0	55	21	29	19	29	1.98
61643043--61643078	18	2.0	18	94	0	63	27	5	13	52	1.63
61643117--61643154	18	2.1	18	90	0	58	47	10	10	31	1.72
61652215--61652243	15	1.9	15	100	0	58	34	17	6	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61653103--61653239	63	2.2	63	82	2	168	21	32	21	24	1.98
61654828--61654865	20	1.9	19	89	5	58	65	0	5	28	1.14
61665368--61665535	86	2.0	84	85	10	225	23	17	28	30	1.97
61665331--61665533	43	4.7	43	81	11	204	23	17	28	30	1.97
61665367--61665539	85	2.0	85	82	9	219	24	17	28	29	1.98
61669768--61669807	18	2.3	18	87	8	57	52	2	0	45	1.14
61673090--61673124	3	11.7	3	93	0	61	31	37	0	31	1.58
61676042--61676097	29	1.9	29	92	0	94	14	5	35	44	1.68
61683210--61683254	24	1.9	23	82	13	56	24	0	17	57	1.40
61683286--61683328	20	2.2	19	84	12	52	32	4	0	62	1.15
61695433--61695462	12	2.5	12	94	0	51	36	10	0	53	1.35
61701265--61701323	26	2.3	26	80	11	70	25	8	25	40	1.83
61705038--61705221	51	3.6	50	75	7	138	25	18	26	30	1.98
61705038--61705223	102	1.8	102	83	4	250	24	18	26	30	1.98
61705227--61705319	45	2.1	45	89	0	141	29	20	19	31	1.97
61708417--61708449	4	8.2	4	87	12	50	78	0	0	21	0.75
61714672--61714712	21	2.0	21	90	0	64	29	21	29	19	1.98
61718258--61718364	55	1.9	55	96	0	196	22	21	13	42	1.87
61718312--61718382	37	1.9	37	97	0	133	25	19	15	39	1.91
61718363--61718660	52	5.9	52	81	9	368	28	22	14	34	1.94
61718345--61718666	98	3.3	98	94	0	545	28	22	13	34	1.93
61720891--61720973	11	7.9	11	72	10	75	22	30	2	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61720906--61720985	40	2.0	40	92	0	133	26	28	1	43	1.62
61724853--61725148	152	2.0	151	87	3	434	31	9	7	51	1.61
61726431--61726488	25	2.3	25	82	8	64	56	0	0	43	0.99
61727682--61727708	13	2.1	13	100	0	54	37	18	22	22	1.95
61730329--61730377	15	3.3	15	74	5	55	59	4	4	32	1.35
61735249--61735288	20	2.0	20	85	9	55	22	30	0	47	1.52
61744966--61745060	39	2.5	39	77	6	106	29	27	21	22	1.99
61748716--61748790	38	2.0	38	89	0	114	33	1	36	29	1.66
61749742--61749785	11	4.2	11	85	11	65	18	6	27	47	1.73
61749755--61749820	9	7.2	9	85	10	80	22	10	27	39	1.87
61749747--61749794	20	2.4	20	96	0	87	20	8	29	41	1.81
61749755--61749819	20	3.6	17	85	6	67	23	10	27	38	1.88
61759324--61759378	22	2.5	22	90	0	83	52	12	23	10	1.71
61763460--61763498	19	2.1	19	85	9	53	61	0	2	35	1.10
61763455--61763556	43	2.5	40	77	11	107	60	0	2	36	1.12
61764131--61764251	38	3.1	38	77	19	133	61	0	3	35	1.13
61764127--61764252	40	3.2	39	87	8	184	61	0	3	35	1.12
61764167--61764245	10	7.8	10	74	12	54	60	0	3	35	1.15
61764114--61764204	11	7.9	11	68	17	51	57	0	2	40	1.11
61765948--61766084	51	2.7	51	77	0	166	39	13	6	40	1.71
61773937--61773991	23	2.3	23	84	9	67	18	10	5	65	1.42
61778555--61778598	11	4.3	11	73	26	51	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61778556--61778598	15	2.9	14	78	21	52	72	0	27	0	0.85
61778559--61778600	17	2.7	15	82	17	50	73	0	26	0	0.83
61778855--61778949	40	2.6	36	82	12	120	33	4	7	54	1.47
61781825--61781866	8	5.4	8	85	5	59	23	0	26	50	1.50
61784183--61785234	159	6.6	158	91	3	1632	28	9	9	52	1.64
61784183--61785234	160	6.6	158	91	2	1637	28	9	9	52	1.64
61785237--61785286	16	3.2	16	70	13	50	22	8	4	66	1.35
61785605--61785649	10	4.5	10	80	0	54	0	28	0	71	0.87
61785517--61785635	48	2.6	44	74	14	116	0	38	1	58	1.14
61785614--61785656	20	2.2	20	91	0	68	0	34	0	65	0.93
61785701--61785765	27	2.4	27	84	0	76	9	35	30	24	1.87
61785958--61785999	19	2.3	18	84	15	52	35	0	14	50	1.43
61787254--61787920	114	5.9	111	79	6	572	32	18	22	26	1.97
61787368--61788151	208	3.5	226	81	8	836	32	18	22	27	1.97
61788370--61788440	14	5.0	14	69	16	56	22	1	35	40	1.63
61789597--61789643	22	2.1	22	96	0	85	27	8	23	40	1.83
61789983--61790098	36	3.2	36	70	16	114	29	6	18	46	1.72
61789950--61790150	71	2.8	71	96	1	359	26	4	18	50	1.65
61790286--61790315	14	2.1	14	100	0	60	26	13	6	53	1.64
61790995--61791072	31	2.5	31	87	8	115	47	2	0	50	1.15
61791405--61791640	9	27.9	9	70	13	117	44	22	3	29	1.70
61791405--61791641	25	9.4	25	69	6	172	44	21	3	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61791497--61791528	16	2.0	16	93	0	55	53	18	6	21	1.67
61791414--61791641	52	4.5	52	83	4	252	44	21	3	29	1.71
61797118--61797188	21	3.4	21	80	0	79	33	18	45	2	1.64
61797512--61797801	42	6.9	42	86	1	177	28	21	21	29	1.98
61797601--61797834	126	1.9	126	94	1	416	24	22	21	31	1.98
61797601--61797845	42	5.8	42	91	2	377	23	22	21	32	1.98
61801467--61801536	31	2.3	31	92	0	113	38	14	7	40	1.73
61807482--61807540	31	1.9	31	89	6	93	44	6	6	42	1.57
61811551--61811604	27	2.0	27	82	7	65	20	1	5	72	1.14
61819780--61819821	22	2.0	22	86	9	61	50	4	7	38	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240