genome.fa.s24.2.7.7.80.10.50.1000.234.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  234  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70585019--70585144	40	3.1	40	91	1	198	19	31	16	31	1.94
70586830--70586859	15	2.1	15	93	6	53	36	0	6	56	1.26
70596702--70596734	12	2.6	13	85	9	50	72	0	9	18	1.10
70604367--70604455	18	4.9	18	84	0	115	31	23	13	31	1.93
70604365--70604455	36	2.5	36	90	0	137	30	23	14	31	1.94
70610569--70610605	14	2.6	15	83	12	51	51	0	0	48	1.00
70610595--70610658	27	2.3	26	80	15	67	39	1	3	56	1.25
70618331--70618385	3	18.7	3	77	3	58	61	0	32	5	1.19
70618329--70618374	15	3.1	15	90	0	74	60	0	30	8	1.26
70624124--70624185	3	20.7	3	100	0	124	66	0	33	0	0.92
70633633--70633704	37	1.9	37	86	5	101	43	9	9	37	1.71
70643258--70643299	20	2.1	20	86	8	59	33	2	7	57	1.39
70655519--70655566	25	2.0	24	83	4	60	50	2	4	43	1.33
70666632--70666683	27	1.9	27	96	0	95	67	1	11	19	1.31
70673713--70673759	21	2.2	20	79	17	51	21	36	2	40	1.65
70673708--70673752	23	1.9	24	82	13	58	24	33	2	40	1.68
70696934--70696994	4	15.0	4	77	19	56	21	4	0	73	1.01
70696936--70696990	18	2.9	19	77	15	60	20	5	0	74	1.01
70696937--70697002	22	2.8	24	84	13	75	21	6	0	72	1.05
70696964--70697010	22	2.1	22	84	7	60	25	4	4	65	1.29
70697920--70697974	15	3.4	16	80	12	60	74	1	1	21	1.01
70698522--70698556	15	2.4	15	90	4	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70705253--70705293	21	2.0	21	81	18	50	31	19	26	21	1.97
70718522--70718567	18	2.8	18	84	15	64	0	30	41	28	1.56
70720318--70720360	13	3.1	14	84	12	54	60	0	0	39	0.97
70723946--70723980	16	2.2	16	100	0	70	31	17	5	45	1.71
70730835--70730883	26	2.0	24	88	11	73	24	14	4	57	1.55
70742839--70742910	36	2.0	36	91	0	117	27	47	0	25	1.52
70748135--70748187	4	13.2	4	100	0	106	24	0	24	50	1.49
70748322--70748361	4	10.0	4	100	0	80	25	0	25	50	1.50
70748007--70748361	187	1.9	188	99	0	703	35	17	15	30	1.92
70749014--70749429	44	9.1	45	68	11	204	30	19	17	32	1.95
70749163--70749429	133	2.0	132	83	5	333	31	20	16	31	1.94
70749261--70749431	89	1.9	89	80	2	200	30	22	15	30	1.95
70749513--70749613	44	2.3	44	81	5	114	26	18	21	32	1.97
70754285--70754325	21	2.0	21	90	0	64	29	21	29	19	1.98
70763262--70763318	6	10.3	6	78	14	61	50	0	0	49	1.00
70783602--70783650	23	2.3	21	86	10	64	22	22	0	55	1.44
70783612--70783657	23	2.0	23	100	0	92	21	21	0	56	1.42
70783617--70783668	23	2.5	20	84	12	61	21	17	1	59	1.47
70784192--70784360	21	8.1	21	68	6	94	45	17	19	17	1.86
70784211--70784361	42	3.6	40	77	7	140	45	16	19	18	1.86
70784194--70784310	63	1.9	61	84	7	155	44	17	21	17	1.87
70784695--70784736	17	2.4	18	80	4	50	50	7	0	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70789475--70789504	16	1.9	16	93	6	53	30	26	0	43	1.55
70789670--70789699	16	1.9	16	93	6	53	30	26	0	43	1.55
70789411--70790199	195	4.0	195	100	0	1578	23	24	6	45	1.75
70789865--70789894	16	1.9	16	93	6	53	30	26	0	43	1.55
70790060--70790089	16	1.9	16	93	6	53	30	26	0	43	1.55
70793364--70793401	18	2.1	19	90	5	60	21	21	5	52	1.66
70799826--70799883	29	2.0	28	83	3	71	29	12	6	51	1.65
70804524--70804720	98	2.0	98	96	0	367	36	24	10	28	1.89
70805241--70805296	21	2.6	21	74	2	58	57	0	10	32	1.33
70805374--70805408	17	2.1	17	100	0	70	60	0	11	28	1.32
70806770--70807066	132	2.2	132	95	1	542	30	22	18	28	1.97
70806921--70807221	155	1.9	155	96	0	557	32	21	18	27	1.97
70806789--70807321	287	1.9	287	95	0	958	30	22	18	28	1.97
70808667--70808699	5	6.8	5	96	3	59	0	0	15	84	0.61
70812157--70812353	98	2.0	98	96	0	367	36	24	10	28	1.89
70812871--70812926	21	2.6	21	74	2	58	57	0	10	32	1.33
70820350--70820411	24	2.4	27	86	7	85	17	12	3	66	1.38
70820372--70820425	24	2.3	23	81	12	65	24	12	0	62	1.30
70825118--70825313	44	4.6	44	72	15	185	29	21	22	26	1.99
70825112--70825391	44	6.6	41	70	12	167	27	22	22	27	1.99
70825112--70825400	127	2.3	127	98	0	560	28	22	22	26	1.99
70826880--70826918	18	2.2	17	86	4	51	35	7	0	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70828957--70829068	4	28.0	4	98	0	215	25	0	24	50	1.50
70829722--70829834	44	2.6	44	80	5	122	32	20	16	30	1.95
70829901--70830021	44	2.8	44	80	2	127	30	19	18	32	1.95
70832518--70832561	22	2.0	22	81	0	52	36	0	2	61	1.09
70833527--70833564	18	2.1	19	90	5	60	52	5	21	21	1.66
70838719--70838756	18	2.1	19	90	5	60	21	21	5	52	1.66
70844594--70844660	29	2.4	28	73	12	64	23	5	7	62	1.44
70853671--70853717	16	3.0	17	79	17	57	48	0	0	51	1.00
70890726--70891038	113	2.9	111	75	12	319	35	17	18	29	1.94
70892873--70892908	3	12.0	3	100	0	72	66	0	0	33	0.92
70893078--70893121	23	2.0	22	90	4	70	54	2	9	34	1.44
70893829--70893886	22	2.6	22	81	7	64	41	17	5	36	1.72
70894587--70894872	88	3.2	88	68	12	253	25	23	20	30	1.99
70894675--70894787	44	2.6	44	79	0	118	29	23	17	30	1.97
70894578--70894945	176	2.1	176	91	1	594	26	24	18	30	1.98
70894649--70894932	88	3.2	88	67	9	236	26	24	18	30	1.98
70894886--70895671	44	18.8	44	75	14	560	29	25	17	26	1.98
70894934--70895076	34	3.9	34	77	16	160	30	25	20	23	1.99
70894890--70895625	78	8.9	78	74	13	520	29	25	17	26	1.98
70894968--70895671	166	4.2	166	75	8	720	29	25	18	26	1.98
70895178--70895242	34	1.9	34	96	0	121	29	23	23	24	1.99
70895520--70895584	34	1.9	34	96	0	121	27	24	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70897872--70897937	25	2.6	25	83	9	71	56	6	18	19	1.62
70899244--70899289	2	24.0	2	82	8	60	0	54	0	45	0.99
70900190--70900241	21	2.5	21	87	6	70	21	9	1	67	1.29
70904320--70904352	3	11.0	3	100	0	66	66	0	0	33	0.92
70904522--70904572	27	1.9	26	88	4	75	50	1	9	37	1.47
70904522--70904585	27	2.4	26	80	12	67	54	1	9	34	1.42
70905285--70905342	22	2.6	22	81	7	64	41	17	5	36	1.72
70905954--70906004	13	3.9	13	78	0	66	35	25	7	31	1.85
70917130--70917204	32	2.3	32	80	14	84	40	0	2	57	1.13
70918194--70918250	23	2.5	23	88	0	87	28	14	14	43	1.83
70918394--70918444	19	2.7	19	82	11	61	56	5	0	37	1.23
70918404--70918459	26	2.1	26	86	3	76	53	5	0	41	1.24
70921926--70921952	13	2.1	13	100	0	54	25	0	0	74	0.83
70922507--70922566	31	1.9	31	83	6	77	28	16	11	43	1.83
70924340--70924372	16	2.0	17	88	5	50	75	12	0	12	1.04
70926893--70927091	67	3.0	67	96	0	362	21	19	33	26	1.97
70929353--70929386	3	11.3	3	87	0	50	29	0	2	67	1.05
70943296--70943458	21	7.8	21	71	8	125	47	14	19	19	1.83
70943296--70943471	42	4.2	42	82	1	210	45	14	19	19	1.85
70943284--70943473	84	2.3	83	82	4	247	45	15	19	19	1.85
70944224--70944263	14	2.9	14	84	0	53	32	7	17	42	1.77
70944247--70944286	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70944232--70944298	34	1.9	35	90	3	109	31	8	13	46	1.74
70944385--70944423	20	2.0	20	94	0	69	48	2	0	48	1.15
70944454--70944505	16	3.2	15	78	13	50	42	1	1	53	1.23
70947834--70947883	25	2.0	25	88	0	73	62	4	30	4	1.32
70947943--70947986	12	3.7	12	87	0	70	43	0	56	0	0.99
70947943--70947986	6	7.3	6	84	0	61	43	0	56	0	0.99
70947948--70948000	24	2.2	24	82	0	61	43	0	54	1	1.11
70950836--70950983	74	2.0	74	95	0	269	39	8	14	37	1.76
70951649--70951681	13	2.4	14	90	5	50	48	3	0	48	1.17
70954861--70955058	44	4.5	44	76	6	159	32	18	12	36	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240