genome.fa.s24.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  150  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47126872--47126957	28	3.1	28	81	3	93	25	26	16	31	1.96
47131308--47131419	28	4.0	28	80	4	109	27	30	14	27	1.95
47131484--47131517	18	1.9	18	88	5	52	23	35	23	17	1.95
47131631--47131663	16	2.1	16	94	0	57	21	24	12	42	1.86
47133810--47134197	48	7.8	48	77	12	282	24	17	30	27	1.97
47133810--47134197	96	3.9	96	75	12	341	24	17	30	27	1.97
47133989--47134021	16	2.1	16	100	0	66	18	12	36	33	1.88
47133941--47134069	64	2.0	64	92	0	213	23	15	33	27	1.95
47133869--47134163	160	1.8	160	91	0	482	24	16	31	27	1.96
47136850--47136994	37	3.9	37	94	0	245	26	31	19	22	1.98
47137138--47137274	46	3.0	46	84	0	184	25	29	8	35	1.86
47137248--47137681	47	9.1	47	89	4	643	26	29	12	32	1.93
47137248--47137660	98	4.3	98	91	2	644	25	29	12	31	1.93
47137248--47137681	145	3.0	142	88	4	665	26	29	12	32	1.93
47137603--47137680	25	3.2	25	64	29	69	29	29	10	30	1.90
47137581--47137655	22	3.3	22	64	29	57	25	30	13	30	1.94
47137607--47137682	23	3.3	23	64	29	61	28	28	10	31	1.90
47141772--47141803	16	2.0	16	93	0	55	34	18	0	46	1.49
47141982--47142368	50	7.7	50	77	4	366	30	25	17	26	1.97
47141995--47142377	151	2.5	151	91	0	613	31	25	17	26	1.97
47142732--47142771	19	2.0	20	85	4	55	50	15	0	35	1.44
47144116--47144469	69	5.2	69	79	4	358	21	22	22	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47151016--47151221	40	5.2	40	91	2	328	29	27	20	22	1.99
47152441--47152466	13	2.0	13	100	0	52	61	7	0	30	1.24
47158978--47159143	40	4.2	40	92	3	266	28	27	21	22	1.99
47160359--47160384	13	2.0	13	100	0	52	61	7	0	30	1.24
47167356--47167523	40	4.2	40	83	4	106	25	27	23	23	2.00
47167379--47167523	40	3.6	40	85	4	193	23	26	24	25	2.00
47168709--47168784	38	2.0	38	100	0	152	31	23	13	31	1.93
47181612--47181655	18	2.6	16	86	13	70	75	9	2	13	1.14
47182338--47182386	24	2.0	24	92	0	80	34	20	20	24	1.96
47184419--47184469	17	3.1	17	83	5	61	39	9	0	50	1.35
47186300--47186721	208	2.0	208	96	0	781	31	23	8	36	1.84
47192993--47193170	27	6.6	27	85	3	205	26	14	28	30	1.95
47192994--47193149	82	1.9	81	89	3	242	26	14	28	30	1.95
47192990--47193170	82	2.2	81	84	2	238	26	14	28	30	1.95
47195314--47195411	52	1.9	50	83	4	124	28	17	15	38	1.90
47197249--47197514	134	2.0	134	92	0	442	36	13	15	34	1.87
47201934--47202001	20	3.4	20	72	0	73	25	19	23	32	1.97
47201839--47202040	40	5.1	40	76	5	176	23	21	22	32	1.98
47201886--47202035	80	1.9	79	83	4	194	23	21	21	34	1.97
47202912--47203040	46	2.8	46	83	2	179	29	23	19	27	1.98
47206717--47206802	39	2.2	39	95	0	154	37	23	0	39	1.55
47218109--47218155	22	2.1	23	92	4	78	46	2	14	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47220383--47220420	11	3.1	12	85	14	51	44	0	10	44	1.38
47227841--47228018	27	6.6	27	82	3	178	29	28	15	26	1.96
47235938--47236115	27	6.6	27	82	3	178	29	28	15	26	1.96
47238248--47238349	51	2.0	51	94	0	177	19	26	16	37	1.93
47239806--47239964	43	3.7	43	78	7	153	32	23	16	28	1.96
47247441--47247546	43	2.5	43	82	3	124	39	18	13	28	1.88
47248253--47248286	17	2.0	17	88	0	50	61	11	5	20	1.50
47252810--47252959	79	1.9	79	84	10	200	25	22	28	24	1.99
47252810--47252961	39	3.8	40	83	9	188	25	21	28	25	1.99
47252939--47252983	22	2.0	22	100	0	90	17	22	31	28	1.97
47252972--47253037	33	2.0	33	82	5	80	22	22	21	33	1.97
47255542--47255596	26	2.2	24	81	15	60	21	21	7	49	1.74
47255550--47255621	26	2.7	27	91	6	119	20	22	5	51	1.68
47257944--47258153	40	5.3	40	91	0	296	24	21	29	25	1.99
47257944--47258188	80	3.1	80	84	2	244	25	21	28	24	1.99
47269043--47269116	29	2.6	29	86	4	96	27	16	31	25	1.96
47272029--47272147	51	2.3	51	100	0	238	36	19	1	42	1.61
47272133--47272171	12	3.2	12	92	0	69	30	20	0	48	1.50
47273802--47273855	21	2.6	21	93	0	90	18	24	18	38	1.93
47276193--47276230	13	3.0	13	92	3	60	42	15	28	13	1.85
47291464--47291506	16	2.8	15	75	6	50	41	0	18	39	1.51
47294381--47294485	27	3.9	26	82	9	122	17	24	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47294381--47294490	54	2.0	54	84	6	143	17	24	20	37	1.94
47335281--47335319	19	2.2	18	86	9	53	10	12	2	74	1.17
47335378--47335421	23	1.9	23	90	0	70	43	9	4	43	1.56
47343685--47343968	50	5.7	50	84	2	333	20	29	21	28	1.98
47349242--47349348	50	2.1	52	91	3	173	31	14	14	39	1.86
47351948--47352027	20	4.0	20	83	0	97	7	26	22	43	1.79
47353538--47353594	24	2.4	24	96	0	105	38	17	24	19	1.93
47358569--47358620	21	2.5	21	96	0	95	9	23	11	55	1.64
47358549--47358631	21	3.8	21	83	4	85	13	24	10	51	1.72
47360600--47362162	391	4.0	391	98	0	2983	33	17	15	33	1.92
47365040--47365073	14	2.3	15	90	5	52	11	20	11	55	1.67
47368678--47369021	122	2.8	123	90	1	539	31	16	19	32	1.94
47372134--47372158	10	2.5	10	100	0	50	48	0	8	44	1.32
47372186--47372269	18	4.6	18	72	5	69	52	4	7	35	1.50
47372142--47372298	56	2.8	56	79	10	196	45	5	11	37	1.64
47372299--47372387	18	5.3	18	71	17	84	28	0	23	48	1.51
47372317--47372474	29	5.8	29	75	14	151	27	0	25	46	1.53
47372451--47372582	18	7.7	18	68	14	82	27	0	26	46	1.53
47372486--47372510	6	4.2	6	100	0	50	16	0	52	32	1.44
47372498--47372557	29	2.1	29	93	0	102	26	0	30	43	1.55
47372292--47372507	47	4.3	47	83	12	279	25	0	28	46	1.53
47372415--47372578	83	2.0	83	91	2	267	26	0	28	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47372578--47372641	25	2.5	26	82	2	85	39	9	1	50	1.44
47373735--47373759	7	3.6	7	100	0	50	60	12	0	28	1.32
47374841--47374904	31	2.1	31	100	0	128	65	0	0	34	0.93
47374841--47374892	21	2.5	20	75	6	59	69	0	0	30	0.89
47374841--47374892	10	5.1	10	79	4	59	69	0	0	30	0.89
47375599--47375631	6	5.7	6	96	3	59	48	0	0	51	1.00
47376418--47376442	10	2.5	10	100	0	50	32	0	16	52	1.44
47376483--47376517	18	1.9	18	88	11	54	57	2	11	28	1.48
47378643--47378668	13	2.0	13	100	0	52	46	0	0	53	1.00
47378919--47378956	17	2.0	20	85	14	55	26	0	0	73	0.83
47380869--47380955	24	3.6	24	88	1	129	27	14	24	33	1.95
47380855--47380970	48	2.4	49	77	2	126	27	18	23	30	1.98
47384729--47384925	48	4.1	48	87	0	277	24	29	19	26	1.98
47392084--47392185	25	4.1	25	76	3	107	35	19	23	21	1.96
47393961--47393990	14	2.1	14	100	0	60	20	6	43	30	1.77
47397843--47397879	13	2.8	13	84	15	58	78	0	18	2	0.87
47399016--47399172	54	2.9	54	80	3	181	26	18	31	22	1.97
47403761--47403802	15	2.7	16	88	7	68	30	0	2	66	1.04
47403764--47403813	25	2.0	25	84	7	66	28	4	2	66	1.21
47403761--47403813	15	3.4	16	82	12	58	30	3	1	64	1.22
47409470--47409520	24	2.1	24	100	0	102	47	0	21	31	1.51
47411205--47411249	22	2.0	22	91	0	72	22	13	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47423881--47423927	19	2.5	18	80	16	51	48	0	0	51	1.00
47428881--47429066	50	3.6	50	82	4	183	27	21	28	22	1.99
47429315--47429353	12	3.2	12	85	0	51	51	5	23	20	1.67
47440549--47440587	18	2.2	17	86	13	53	33	0	20	46	1.51
47440707--47440734	8	3.5	8	100	0	56	25	10	28	35	1.89
47440821--47440896	23	3.3	23	88	0	125	23	21	25	30	1.99
47446115--47446149	16	2.1	17	89	5	54	37	0	51	11	1.38
47447451--47447517	29	2.4	28	76	14	75	44	29	10	14	1.79
47449624--47449670	24	2.0	24	87	8	69	12	42	6	38	1.69
47467479--47467683	43	4.8	43	82	7	249	30	31	19	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240