genome.fa.s24.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  122  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37902971--37903035	22	3.0	22	77	8	71	24	46	3	26	1.67
37902979--37903035	21	2.7	21	78	10	62	28	42	1	28	1.66
37911479--37911508	5	6.2	5	96	3	53	83	0	16	0	0.65
37912328--37912481	41	3.7	42	77	11	131	23	16	28	31	1.96
37912641--37912672	16	1.9	17	93	6	57	40	0	21	37	1.54
37914360--37914413	23	2.3	23	96	0	99	29	5	18	46	1.72
37917601--37917636	15	2.4	15	100	0	72	33	33	5	27	1.80
37919278--37919413	28	4.9	27	83	5	139	19	17	9	52	1.71
37926619--37926812	97	2.0	97	98	0	379	34	18	22	25	1.96
37927244--37927382	27	5.2	27	85	5	192	44	22	16	16	1.86
37929182--37929223	20	2.0	22	86	9	61	69	0	2	28	1.01
37933594--37933729	59	2.3	57	84	3	173	45	0	2	51	1.16
37933851--37933902	16	3.2	16	83	0	68	30	25	3	40	1.73
37934087--37934158	35	2.1	35	97	0	135	30	11	20	37	1.88
37936051--37936433	193	2.0	191	81	8	445	41	11	8	38	1.72
37937276--37937346	36	2.0	36	88	0	106	32	9	16	40	1.82
37937571--37937666	48	2.0	48	85	0	129	20	17	19	41	1.90
37942411--37942481	36	2.0	36	91	0	115	30	9	18	40	1.83
37942708--37942801	48	2.0	48	89	0	143	19	19	22	39	1.93
37944344--37944459	62	1.9	61	84	5	155	50	6	2	40	1.40
37948166--37948253	44	2.0	44	97	0	167	31	23	9	35	1.86
37952082--37952129	25	1.9	25	87	8	71	35	6	14	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37952627--37952667	19	2.2	19	86	0	55	24	24	17	34	1.96
37956304--37956606	40	7.6	40	89	2	396	27	28	20	24	1.99
37969694--37969791	27	3.5	28	87	2	126	26	12	28	32	1.92
37969722--37969804	27	3.0	27	84	5	78	30	10	25	33	1.90
37983241--37983422	89	2.0	89	98	0	355	52	4	20	21	1.66
37998019--37998045	13	2.1	13	100	0	54	29	0	22	48	1.51
37999135--37999293	43	3.7	42	80	2	156	23	17	27	31	1.97
38006320--38006346	12	2.2	12	100	0	54	22	11	11	55	1.66
38007126--38007164	20	2.0	20	90	10	62	15	23	5	56	1.59
38007251--38007307	25	2.3	25	100	0	114	26	14	8	50	1.71
38009090--38009127	19	2.0	19	94	0	67	28	10	15	44	1.80
38027282--38027315	17	2.1	16	88	5	50	55	0	5	38	1.24
38030576--38030743	40	4.2	40	82	8	148	27	27	20	24	1.99
38030611--38030796	80	2.3	80	83	9	229	27	27	20	23	1.99
38030613--38030796	40	4.6	40	83	7	205	27	27	21	23	1.99
38038517--38038684	40	4.2	40	80	9	139	27	27	20	24	1.99
38038554--38038684	40	3.3	39	86	4	181	29	27	19	23	1.99
38038552--38038730	80	2.2	80	82	10	215	29	26	19	24	1.99
38057177--38057221	22	2.0	22	100	0	90	33	22	4	40	1.74
38058658--38058704	18	2.6	19	78	18	55	31	14	14	38	1.87
38076940--38077039	50	2.0	50	82	0	119	20	30	25	25	1.99
38084255--38084293	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38084591--38084689	50	2.0	50	87	0	144	20	32	22	25	1.98
38089296--38089331	18	2.1	18	89	5	56	16	30	38	13	1.88
38089296--38089345	18	2.8	17	82	8	55	20	28	36	16	1.93
38094575--38094756	50	3.7	49	78	8	165	28	21	27	23	1.99
38097892--38097918	10	2.7	10	100	0	54	22	0	22	55	1.44
38109509--38109548	16	2.5	16	88	8	55	77	0	17	5	0.94
38112555--38112816	39	6.6	39	86	4	307	25	26	21	26	2.00
38116959--38117126	40	4.2	40	81	8	139	27	26	20	25	1.99
38116994--38117179	80	2.3	80	84	9	238	27	26	20	24	1.99
38116996--38117179	40	4.6	40	81	7	196	27	26	21	24	1.99
38124860--38125027	40	4.2	40	82	8	148	27	27	20	24	1.99
38124895--38125080	80	2.3	80	83	9	229	27	27	20	23	1.99
38124897--38125080	40	4.6	40	83	7	205	27	27	21	23	1.99
38129502--38129681	45	4.0	43	78	8	157	22	14	26	36	1.93
38130126--38130304	87	2.0	88	93	1	306	38	10	12	38	1.78
38140857--38141050	50	3.8	50	84	4	217	27	21	28	22	1.99
38143639--38143887	56	4.7	54	86	4	298	25	19	29	24	1.98
38148205--38148391	41	4.6	41	89	1	259	19	29	21	29	1.98
38153630--38153680	25	2.0	25	84	7	66	19	11	17	50	1.76
38157380--38157598	40	5.5	40	90	4	309	25	21	27	26	1.99
38157380--38157631	120	2.1	119	82	6	296	26	20	27	25	1.99
38165294--38165517	40	5.7	40	87	6	296	24	21	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38165294--38165517	79	2.8	80	87	5	305	24	21	27	26	2.00
38165294--38165515	119	1.9	119	85	7	308	24	22	27	26	2.00
38165301--38165550	79	3.2	79	85	5	258	26	20	26	26	1.99
38165294--38165550	119	2.2	119	81	7	292	25	21	27	25	1.99
38168780--38168813	16	2.1	16	88	0	50	38	2	29	29	1.72
38171243--38171285	5	8.2	5	87	5	59	76	0	2	20	0.89
38171246--38171285	17	2.5	16	88	8	55	77	0	2	20	0.88
38171243--38171285	22	2.0	21	90	4	68	76	0	2	20	0.89
38175757--38175817	25	2.4	25	86	0	77	26	26	19	27	1.99
38176361--38176399	20	2.0	20	94	0	69	25	2	23	48	1.63
38181830--38181895	33	2.0	33	100	0	132	27	24	9	39	1.85
38182819--38182891	37	1.9	37	84	13	96	32	23	1	42	1.63
38182975--38183060	45	1.9	45	90	0	136	33	25	15	25	1.95
38189636--38189808	45	3.9	45	84	4	226	32	24	15	27	1.95
38189645--38189809	90	1.8	89	89	1	258	32	24	14	27	1.94
38192013--38192097	42	2.0	42	100	0	170	38	18	9	32	1.83
38199396--38199580	40	4.7	40	81	7	200	24	22	27	25	2.00
38199449--38199613	79	2.1	79	84	6	210	26	21	27	25	1.99
38205019--38205055	12	3.1	12	100	0	74	59	0	24	16	1.37
38205020--38205054	18	1.9	18	88	0	52	57	0	25	17	1.40
38205438--38205503	23	2.9	23	88	0	96	15	27	25	31	1.95
38209410--38209688	138	2.0	138	100	0	558	34	20	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38212641--38212702	31	2.0	31	100	0	124	41	6	29	22	1.78
38214344--38214386	16	2.6	17	86	13	56	67	0	11	20	1.22
38214645--38214715	21	3.4	20	72	18	56	9	5	5	78	1.07
38215665--38215721	19	2.9	18	79	7	60	82	5	5	7	0.95
38215678--38215721	20	2.2	20	88	4	63	81	6	6	4	0.97
38224788--38224864	27	3.0	26	85	9	95	55	5	2	36	1.36
38224805--38224877	27	2.6	28	83	14	105	58	4	1	35	1.25
38225026--38225069	17	2.6	17	85	3	63	47	0	11	40	1.39
38225192--38225227	3	12.0	3	93	0	63	63	2	0	33	1.08
38225574--38225629	21	2.8	19	87	10	85	35	16	8	39	1.80
38225585--38225628	21	2.1	21	100	0	88	38	13	9	38	1.77
38226409--38226618	44	4.8	44	88	3	316	28	27	18	26	1.98
38226585--38226847	88	3.0	86	87	3	355	21	23	26	28	1.99
38226365--38226690	132	2.5	132	75	8	338	25	25	21	27	1.99
38226835--38227116	44	6.4	44	81	5	318	29	26	15	28	1.96
38226835--38227116	132	2.1	133	95	0	512	29	26	15	28	1.96
38232029--38232099	23	3.1	22	76	15	72	67	8	4	19	1.34
38232234--38232306	27	2.6	26	79	12	65	57	5	4	32	1.41
38232689--38232721	13	2.7	13	90	9	52	81	0	0	18	0.68
38232657--38232715	32	1.9	32	83	10	79	67	3	1	27	1.16
38233013--38233060	21	2.4	20	89	6	71	37	14	8	39	1.76
38233481--38233522	3	14.7	3	85	9	61	33	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38233738--38233778	3	13.7	3	100	0	82	34	0	0	65	0.93
38235615--38235670	29	1.9	29	96	0	103	39	0	3	57	1.16
38236431--38236461	15	2.1	15	93	0	53	41	9	0	48	1.36
38251785--38251971	67	2.8	66	91	3	302	27	14	8	49	1.71
38253397--38253432	16	2.2	16	100	0	72	19	36	25	19	1.95
38298697--38298764	29	2.3	29	80	5	75	39	2	0	57	1.14
38298712--38298777	29	2.3	29	81	0	69	37	1	3	57	1.23
38299180--38299231	26	2.0	26	100	0	104	23	19	19	38	1.93
38301168--38301278	29	3.8	29	78	7	116	40	9	13	36	1.76
38309208--38309254	9	5.3	9	97	2	87	29	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240