genome.fa.s24.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  200  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60871487--60871559	33	2.3	31	86	6	94	19	19	23	38	1.93
60872173--60872205	12	2.8	12	90	4	50	75	0	3	21	0.93
60872506--60872631	33	4.0	32	71	15	118	46	3	3	46	1.37
60872622--60873164	25	21.2	25	89	3	807	46	20	0	33	1.53
60872622--60873164	51	10.6	49	91	4	771	46	20	0	33	1.53
60873144--60873216	9	8.2	9	75	14	62	43	20	0	35	1.52
60879172--60879288	42	2.7	43	92	2	191	37	19	17	25	1.93
60881482--60881576	31	3.1	30	77	5	93	33	13	11	41	1.81
60886346--60886412	34	2.0	34	90	0	107	47	26	0	25	1.52
60888996--60889059	31	2.1	31	96	0	119	31	37	14	17	1.89
60892877--60892935	31	1.9	31	92	0	100	35	22	3	38	1.71
60893085--60893165	22	3.9	22	78	10	66	65	6	2	25	1.29
60900175--60900214	13	3.1	13	85	0	53	62	0	0	37	0.95
60901067--60901158	8	12.0	8	72	8	50	68	3	0	28	1.05
60903469--60903497	7	4.1	7	100	0	58	86	0	0	13	0.58
60914991--60915046	27	2.1	27	83	6	69	28	25	19	26	1.99
60924906--60925526	318	2.0	318	100	0	1242	38	14	13	33	1.86
60927022--60927046	9	2.8	9	100	0	50	40	24	12	24	1.88
60933768--60933815	17	2.8	16	81	9	51	18	2	6	72	1.15
60942057--60942097	18	2.3	18	100	0	82	31	36	17	14	1.90
60945189--60945649	44	10.3	44	76	8	392	33	19	18	28	1.96
60945152--60945622	94	5.2	93	77	8	355	32	18	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60945463--60945624	85	1.9	85	93	0	279	30	19	20	28	1.97
60945285--60945637	179	2.0	182	85	3	482	33	18	18	29	1.95
60947793--60947818	11	2.4	11	100	0	52	92	0	0	7	0.39
60951876--60951901	5	5.2	5	100	0	52	42	19	19	19	1.90
60951991--60952016	5	5.2	5	100	0	52	38	19	19	23	1.93
60952387--60952415	9	3.2	9	100	0	58	68	0	0	31	0.89
60952669--60952728	30	2.0	31	83	9	79	41	0	38	20	1.52
60952941--60952977	9	4.1	9	92	0	65	29	10	13	45	1.77
60953031--60953072	9	4.7	9	84	0	57	35	19	11	33	1.88
60954247--60954317	31	2.4	30	83	4	81	56	8	9	25	1.60
60963394--60963425	5	6.4	5	100	0	64	40	0	0	59	0.97
60963824--60963896	37	2.0	37	94	0	128	27	19	9	43	1.81
60972078--60972108	11	2.9	11	95	4	55	83	6	0	9	0.79
60972443--60972479	19	2.0	18	89	5	56	40	2	0	56	1.13
60974059--60974105	20	2.3	21	82	10	62	53	0	4	42	1.20
60976418--60976466	22	2.2	22	92	0	80	34	14	20	30	1.92
60981155--60981318	82	2.0	82	89	0	247	42	10	15	31	1.82
60982113--60982173	16	3.4	18	78	15	72	45	0	31	22	1.53
60982114--60982200	32	2.6	33	80	7	86	43	0	33	22	1.54
60982525--60982561	9	4.1	9	89	0	56	29	8	13	48	1.71
60993196--60993430	81	2.9	81	92	0	371	23	21	24	29	1.99
60999131--60999171	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61004986--61005111	65	1.9	65	91	0	207	34	9	19	36	1.84
61013260--61013630	103	3.6	105	91	4	576	30	30	19	18	1.96
61016173--61016463	147	2.0	147	92	1	485	24	20	18	36	1.95
61017502--61017541	19	2.1	19	86	9	55	32	0	2	65	1.06
61022033--61022221	24	7.6	26	66	10	83	18	23	21	35	1.95
61025692--61025730	6	6.5	6	100	0	78	15	69	15	0	1.20
61025697--61025736	18	2.2	18	90	0	62	22	65	12	0	1.26
61036807--61036844	19	2.0	20	85	15	53	21	15	0	63	1.31
61037850--61037937	39	2.2	41	88	8	128	47	5	27	19	1.71
61042955--61043093	71	1.9	72	83	9	178	28	17	27	26	1.97
61042958--61043118	72	2.3	71	79	8	177	28	20	25	25	1.99
61043086--61043128	22	2.0	22	85	0	59	30	27	20	20	1.98
61050582--61050628	20	2.3	20	78	7	51	61	6	0	31	1.21
61051080--61051136	5	10.8	5	78	17	62	24	0	0	75	0.80
61051768--61051905	20	6.7	22	68	15	82	18	13	10	56	1.66
61051748--61051815	21	3.3	20	78	15	61	20	13	4	61	1.48
61052821--61052920	39	2.5	41	82	9	134	46	6	28	20	1.74
61057050--61057085	17	2.1	18	89	5	56	25	2	5	66	1.27
61063890--61063917	3	9.3	3	100	0	56	67	0	0	32	0.91
61076525--61076564	20	2.0	20	100	0	80	10	45	5	40	1.60
61078207--61078239	17	1.9	17	93	0	57	36	3	9	51	1.49
61078277--61078324	20	2.3	21	85	3	71	47	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61078267--61078323	23	2.6	20	86	10	60	47	0	1	50	1.11
61078287--61078334	19	2.3	20	86	10	62	43	0	2	54	1.12
61078466--61078523	21	2.8	20	79	7	71	43	12	3	41	1.59
61078528--61078564	15	2.7	14	84	15	51	56	13	0	29	1.37
61078425--61078550	38	3.2	38	75	16	121	48	11	3	36	1.56
61078528--61078565	7	5.6	7	82	17	53	57	13	0	28	1.36
61078508--61078578	27	2.7	27	70	10	65	49	12	1	36	1.50
61078561--61078612	22	2.4	21	87	3	68	40	19	1	38	1.63
61078683--61078988	9	35.2	9	73	12	223	45	17	1	34	1.59
61081247--61081313	21	3.2	21	84	0	89	28	17	49	4	1.66
61081627--61081790	42	3.9	43	88	2	224	38	18	19	23	1.93
61088748--61088773	12	2.2	12	100	0	52	7	15	7	69	1.35
61094147--61094176	16	1.9	16	93	6	53	30	0	20	50	1.49
61094400--61094430	9	3.4	9	100	0	62	67	0	0	32	0.91
61100602--61100641	6	6.7	6	88	0	53	70	10	5	15	1.32
61100626--61100674	20	2.5	20	80	3	55	79	2	14	4	0.97
61102861--61103171	131	2.4	131	92	0	514	30	21	23	23	1.99
61103377--61103579	44	4.7	44	67	9	121	30	19	22	28	1.98
61103197--61103579	173	2.2	172	80	4	387	30	19	22	27	1.98
61103872--61103901	9	3.3	9	90	0	51	73	0	0	26	0.84
61109579--61109662	31	2.7	31	92	0	141	29	13	14	42	1.83
61109870--61109909	19	2.1	19	86	9	55	65	7	10	17	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61116953--61117018	19	3.5	19	78	10	73	59	0	1	39	1.07
61116979--61117042	29	2.2	30	80	8	78	59	3	0	37	1.13
61117256--61117378	57	2.2	58	81	11	148	31	4	1	61	1.26
61117488--61117698	93	2.3	91	84	6	282	36	7	19	36	1.80
61121113--61121171	29	2.0	29	100	0	118	30	16	11	40	1.85
61121537--61121576	12	3.3	12	96	0	71	22	52	7	17	1.69
61122837--61122886	3	17.3	3	75	8	50	34	2	4	60	1.27
61123011--61123037	3	9.0	3	100	0	54	33	0	0	66	0.92
61134761--61134817	29	1.9	31	86	10	84	26	14	10	49	1.75
61145225--61145264	20	1.9	20	85	10	53	37	0	0	62	0.95
61158009--61158115	42	2.5	42	87	0	151	21	23	37	17	1.94
61161337--61161435	42	2.4	42	86	3	137	22	21	37	19	1.94
61165034--61165068	14	2.4	14	95	4	61	74	0	8	17	1.06
61165706--61165839	42	3.2	42	85	4	173	22	30	21	25	1.99
61172239--61172306	29	2.3	29	94	0	118	26	11	27	33	1.91
61173825--61173851	12	2.2	12	100	0	54	33	18	25	22	1.97
61178160--61178202	22	1.9	23	85	4	61	37	11	0	51	1.39
61182919--61182965	18	2.8	18	81	15	64	55	0	2	42	1.12
61183854--61183892	19	2.2	18	86	9	53	64	0	2	33	1.08
61201369--61201405	3	12.7	3	94	5	67	67	0	0	32	0.91
61205584--61206489	457	2.0	456	90	1	1413	33	20	15	31	1.93
61207633--61207658	12	2.2	12	100	0	52	34	0	23	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61208676--61208730	3	18.3	3	96	0	101	34	1	0	63	1.05
61210422--61210469	25	1.9	25	82	0	60	35	6	16	41	1.74
61215202--61215240	18	2.2	18	95	0	69	58	10	2	28	1.44
61215274--61215337	29	2.2	29	91	0	101	29	28	1	40	1.66
61221645--61221669	6	4.2	6	100	0	50	0	52	0	48	1.00
61224549--61224581	17	1.9	17	93	0	57	39	0	0	60	0.97
61224549--61224583	16	2.1	17	89	5	54	40	0	0	60	0.97
61231121--61231158	17	2.2	17	86	9	51	31	5	5	57	1.43
61232743--61232772	15	1.9	16	93	6	53	43	6	26	23	1.78
61237058--61237194	60	2.4	60	81	6	167	9	27	4	58	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240