genome.fa.s24.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  211  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63860351--63860391	7	5.9	7	85	0	55	31	48	0	19	1.49
63860832--63861029	41	4.8	40	84	4	236	28	23	22	25	1.99
63860832--63861029	82	2.4	83	84	2	265	28	23	22	25	1.99
63862643--63862748	44	2.5	43	79	10	103	38	12	3	45	1.60
63863278--63863488	106	2.0	105	85	5	282	31	16	17	35	1.92
63869141--63869193	21	2.5	21	90	0	79	24	9	35	30	1.87
63873311--63873420	37	2.8	39	80	9	134	24	18	21	35	1.95
63877677--63877709	7	4.6	7	96	3	57	42	0	0	57	0.98
63885992--63886022	16	1.9	16	93	0	53	6	3	22	67	1.28
63890189--63890321	69	1.9	69	86	6	189	60	1	6	30	1.31
63890286--63890478	52	3.3	58	71	19	177	61	1	7	29	1.33
63890372--63890414	22	2.0	21	82	13	52	69	0	9	20	1.15
63890379--63890423	21	2.0	23	84	16	60	68	0	6	24	1.13
63890336--63890550	69	3.2	65	82	12	217	61	1	8	28	1.34
63891930--63892013	44	1.9	44	87	0	123	26	20	21	32	1.98
63891949--63892208	96	2.7	96	78	0	270	32	17	15	34	1.91
63900935--63901127	41	4.7	41	94	0	332	23	29	20	26	1.99
63904021--63904045	13	1.9	13	100	0	50	8	0	24	68	1.16
63905189--63905233	19	2.5	19	85	7	58	42	2	11	44	1.52
63905339--63905368	2	15.5	2	93	6	53	50	0	0	50	1.00
63905577--63905793	41	5.3	41	90	0	344	28	19	28	23	1.99
63907523--63907793	40	6.8	40	90	1	382	24	29	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63910577--63910614	20	1.9	20	88	0	58	21	28	13	36	1.91
63910577--63910626	20	2.5	20	83	0	55	22	30	10	38	1.86
63912534--63912558	12	2.1	12	100	0	50	52	16	16	16	1.76
63916531--63916578	22	2.1	23	92	7	80	25	12	10	52	1.71
63918373--63918417	14	3.4	14	81	6	58	17	4	28	48	1.66
63918752--63918850	44	2.2	44	82	3	110	28	25	17	29	1.97
63918793--63918883	42	2.1	44	82	8	107	29	21	15	32	1.94
63921796--63921828	14	2.4	14	94	0	57	18	3	30	48	1.63
63921917--63921957	20	2.0	21	86	13	59	53	0	0	46	1.00
63932466--63932531	18	3.7	17	71	28	57	46	0	7	45	1.31
63936792--63936832	19	2.2	19	90	0	64	29	2	4	63	1.28
63940188--63940267	39	2.1	39	100	0	160	33	10	5	51	1.57
63942170--63942270	50	2.0	50	86	3	141	36	12	18	31	1.89
63948904--63948937	14	2.5	14	95	4	61	14	0	35	50	1.44
63951118--63951147	15	1.9	16	93	6	53	83	0	6	10	0.81
63952177--63952359	38	4.8	38	86	0	213	15	18	28	36	1.92
63952603--63952679	39	2.0	39	89	0	118	33	10	14	41	1.80
63954894--63954955	32	1.9	32	96	0	115	41	17	6	33	1.75
63958257--63958437	53	3.7	52	73	19	190	49	7	2	40	1.45
63958303--63958446	35	4.5	34	70	18	110	50	8	2	38	1.44
63958271--63958454	93	2.0	93	96	0	341	49	7	3	39	1.48
63958502--63958558	16	3.6	16	92	0	96	45	5	3	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63958532--63958595	22	2.8	23	90	4	94	48	1	1	48	1.20
63960043--63960079	4	9.0	4	88	5	56	70	0	2	27	1.01
63959978--63960124	70	2.1	73	87	3	210	61	2	6	30	1.32
63960069--63960176	52	2.1	52	91	3	173	60	0	6	32	1.29
63959994--63960240	116	2.1	116	84	8	311	60	2	7	29	1.36
63959964--63960309	185	1.9	184	89	4	543	60	1	8	29	1.35
63960116--63960330	69	3.2	68	86	3	312	62	2	7	27	1.35
63961710--63961898	51	3.9	49	73	13	131	28	19	15	36	1.92
63961769--63962018	45	5.5	45	74	7	198	30	21	14	34	1.93
63961718--63962033	95	3.4	95	81	6	358	30	19	14	35	1.92
63961761--63962063	89	3.3	88	85	4	354	29	20	14	34	1.93
63961854--63962062	45	4.7	45	75	10	169	29	20	14	34	1.93
63962638--63962696	24	2.4	24	83	11	75	18	5	8	67	1.35
63962653--63962706	24	2.2	24	83	0	63	20	5	7	66	1.37
63962660--63962713	20	2.9	19	76	13	60	18	5	9	66	1.39
63962788--63962825	15	2.5	16	83	12	53	15	10	2	71	1.25
63962875--63962913	15	2.6	15	83	0	51	25	7	5	61	1.44
63962857--63962907	21	2.5	20	81	15	59	23	7	7	60	1.50
63966679--63966720	18	2.3	19	88	12	70	52	0	0	47	1.00
63969008--63969034	7	3.9	7	100	0	54	40	14	0	44	1.46
63970566--63970992	114	3.8	114	89	1	644	24	22	26	25	2.00
63984887--63984953	31	2.2	28	82	15	73	53	5	11	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63985120--63985165	16	2.9	16	80	0	56	36	6	0	56	1.25
63985602--63985788	77	2.4	77	77	3	189	50	18	9	21	1.74
63987016--63987058	23	2.0	23	86	9	63	55	2	0	41	1.12
63990834--63990858	13	1.9	13	100	0	50	40	12	0	48	1.40
63993179--63993212	16	2.1	16	88	0	50	29	2	8	58	1.43
63997361--63997394	16	2.1	16	88	0	50	29	2	8	58	1.43
64001475--64001512	3	12.7	3	100	0	76	34	0	31	34	1.58
64001562--64001595	16	2.1	16	88	0	50	29	2	8	58	1.43
64004390--64004432	19	2.3	19	84	8	52	46	13	11	27	1.78
64008545--64008582	19	2.0	19	89	0	58	36	23	10	28	1.88
64012667--64012791	62	2.0	62	100	0	250	34	16	22	27	1.95
64014553--64014589	17	2.2	17	95	0	65	45	18	16	18	1.85
64024827--64024867	20	2.0	21	86	13	59	53	0	0	46	1.00
64024881--64024935	25	2.2	24	84	12	67	58	0	0	41	0.98
64026375--64026415	22	1.9	21	85	5	55	51	17	2	29	1.58
64027226--64027273	14	3.5	13	75	8	51	68	2	25	4	1.18
64027484--64027517	16	2.1	16	88	0	50	50	14	17	17	1.79
64030319--64030359	21	2.0	21	90	0	64	29	21	29	19	1.98
64032265--64032298	16	2.1	16	88	0	50	50	14	17	17	1.79
64038229--64038316	39	2.2	39	84	8	115	38	18	20	22	1.93
64038244--64038342	40	2.5	41	85	4	123	42	17	19	21	1.89
64038781--64038817	14	2.6	14	95	0	65	21	0	29	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64038866--64038898	14	2.3	15	94	5	59	30	0	33	36	1.58
64039033--64039087	7	8.0	7	81	4	67	16	0	50	32	1.45
64039729--64040010	143	2.0	141	83	6	361	40	16	11	30	1.84
64042878--64042920	13	3.3	13	80	0	50	55	4	2	37	1.33
64044439--64044692	43	5.9	43	81	2	249	27	19	25	27	1.99
64044439--64044692	86	2.9	86	83	1	294	27	19	25	27	1.99
64045970--64045999	13	2.4	12	89	10	51	30	3	23	43	1.70
64047303--64047422	37	3.2	37	67	13	100	35	5	20	38	1.75
64047286--64047449	76	2.1	76	83	6	206	35	6	20	37	1.79
64047644--64047738	41	2.3	41	90	0	154	30	21	22	26	1.98
64048452--64048594	71	2.0	71	98	0	277	33	6	18	41	1.75
64049558--64049597	17	2.4	17	95	0	71	47	5	5	42	1.47
64054919--64055185	43	6.2	43	87	3	326	27	26	19	26	1.99
64054922--64055177	129	2.0	129	86	5	365	27	25	19	26	1.99
64055350--64055379	14	2.1	14	93	0	51	50	13	6	30	1.67
64059479--64059531	20	2.5	21	81	9	63	33	43	0	22	1.54
64059499--64059528	14	2.2	13	94	5	51	33	46	0	20	1.51
64059552--64059598	7	6.6	7	85	4	67	40	31	0	27	1.57
64059552--64059598	14	3.3	14	90	3	76	40	31	0	27	1.57
64059769--64059833	14	4.4	16	81	13	70	43	44	0	12	1.41
64059779--64059886	43	2.5	44	80	10	107	41	41	0	16	1.48
64060263--64060619	41	8.7	40	83	4	419	33	28	20	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64060263--64060619	123	2.9	122	85	3	468	33	28	20	17	1.96
64070680--64070855	87	2.0	85	83	2	217	29	13	14	42	1.84
64075385--64075434	25	2.0	25	88	3	75	56	2	2	40	1.22
64086397--64086462	34	1.9	35	93	3	116	18	12	28	40	1.86
64089743--64089869	62	2.0	62	100	0	254	35	18	16	29	1.93
64091152--64091212	26	2.3	26	83	5	70	63	6	9	19	1.46
64096521--64096579	29	2.0	29	100	0	118	30	13	23	32	1.93
64098081--64098167	20	4.3	19	76	15	68	52	4	2	40	1.34
64100839--64100950	40	2.8	40	80	1	145	34	22	21	21	1.97
64100840--64100974	40	3.4	39	75	9	121	36	22	20	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240