genome.fa.s24.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  157  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49570425--49570463	16	2.6	14	88	8	51	48	2	0	48	1.15
49576238--49576271	16	2.0	18	88	11	54	29	0	29	41	1.57
49578411--49578642	41	5.6	41	93	0	392	24	28	19	28	1.99
49582095--49582285	61	3.2	61	73	11	212	42	1	4	51	1.32
49582033--49582320	120	2.4	119	92	2	477	42	1	4	52	1.29
49582266--49582304	16	2.4	17	87	12	55	43	0	0	56	0.99
49582266--49582300	18	2.0	18	88	5	54	45	0	0	54	0.99
49587660--49587709	23	2.1	23	85	10	66	62	24	0	14	1.32
49591388--49591418	9	3.4	9	90	0	53	25	12	22	38	1.90
49591469--49591505	9	4.1	9	85	0	56	48	13	10	27	1.75
49593334--49593366	14	2.4	14	90	10	50	36	9	0	54	1.32
49593568--49593626	30	2.0	30	100	0	118	44	13	10	32	1.77
49595444--49595726	27	10.6	27	79	6	272	44	20	15	19	1.87
49595444--49595726	54	5.3	53	81	4	311	44	20	15	19	1.87
49595448--49595726	80	3.5	79	84	5	330	44	20	15	18	1.87
49595461--49595726	107	2.5	107	85	1	345	44	21	15	18	1.86
49597831--49597891	31	2.0	31	90	0	95	27	19	26	26	1.99
49600863--49601043	91	2.0	91	83	4	231	27	19	16	37	1.93
49602896--49602929	17	2.0	17	100	0	68	47	0	11	41	1.40
49609094--49609668	81	7.1	80	80	5	559	43	19	16	20	1.88
49609094--49609668	27	21.3	26	79	6	504	43	19	16	20	1.88
49611007--49611042	15	2.5	14	86	8	54	13	5	11	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49615777--49615834	22	2.5	23	86	8	82	31	15	29	24	1.95
49616771--49616802	11	2.9	11	95	0	55	34	28	12	25	1.92
49626981--49627043	31	2.0	32	96	3	119	42	15	9	31	1.79
49630271--49630331	33	1.9	31	83	6	77	72	6	21	0	1.07
49630662--49630725	32	2.0	32	100	0	128	28	15	9	46	1.77
49631040--49631157	62	1.9	59	88	5	173	51	3	3	41	1.35
49631151--49631242	37	2.4	36	79	12	96	51	5	2	41	1.37
49636744--49636774	13	2.4	13	94	0	53	32	22	0	45	1.53
49637683--49637720	17	2.1	19	85	9	53	2	23	0	73	0.95
49644770--49644803	17	1.9	18	88	5	52	0	41	2	55	1.15
49653312--49653425	46	2.5	46	81	8	126	40	20	14	24	1.90
49655605--49655661	20	2.8	19	84	5	60	22	33	0	43	1.54
49658682--49658714	14	2.4	14	90	5	50	36	0	3	60	1.12
49658690--49658740	19	2.7	18	75	24	52	41	0	1	56	1.10
49658700--49658738	20	2.0	20	85	10	53	41	0	2	56	1.13
49659068--49659112	23	1.9	24	86	13	67	57	0	0	42	0.98
49659646--49659696	23	2.3	23	86	3	68	41	7	19	31	1.80
49660541--49660646	42	2.5	41	77	13	101	28	1	4	65	1.23
49660708--49660978	141	1.9	142	85	5	372	52	12	11	23	1.71
49667545--49667656	28	4.2	25	73	13	89	60	5	11	22	1.51
49667546--49667671	53	2.3	55	82	10	168	59	5	12	22	1.54
49667546--49667692	53	2.7	54	81	11	165	59	6	13	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49667562--49667692	28	4.8	28	82	4	124	59	6	12	21	1.56
49667546--49667692	56	2.7	54	84	5	154	59	6	13	21	1.56
49667970--49668101	71	1.9	71	93	3	230	22	21	21	34	1.97
49668039--49668254	43	5.1	43	85	7	282	21	25	20	32	1.97
49668038--49668254	84	2.6	84	87	3	310	21	26	20	32	1.97
49668039--49668254	42	5.1	42	85	6	276	21	25	20	32	1.97
49669718--49669816	28	3.5	29	83	6	114	30	27	15	27	1.96
49671841--49671911	21	3.4	21	80	0	79	5	36	15	42	1.71
49675025--49675485	232	2.0	234	85	3	626	29	19	14	36	1.92
49675259--49675943	270	2.5	269	83	3	865	32	18	14	34	1.91
49675259--49676022	270	2.8	265	81	6	854	32	18	14	34	1.91
49676356--49676406	22	2.3	23	86	3	68	35	41	1	21	1.65
49676364--49676427	29	2.2	29	88	0	92	34	42	1	21	1.63
49676364--49676416	14	3.7	15	75	7	56	33	41	1	22	1.65
49676573--49676648	36	2.1	36	83	11	95	38	0	6	55	1.26
49677600--49677750	83	1.8	82	81	2	187	38	24	19	17	1.93
49677600--49677770	41	4.2	42	74	9	122	38	25	20	16	1.93
49677770--49678097	123	2.7	123	88	2	462	26	25	18	29	1.98
49678239--49678271	15	2.1	17	88	11	52	30	6	21	42	1.77
49681770--49681823	28	1.9	28	88	0	81	27	29	1	40	1.67
49681835--49681872	13	2.9	14	88	11	62	5	10	0	84	0.77
49685053--49685099	20	2.3	20	92	0	76	38	6	38	17	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49689776--49689813	19	2.0	19	94	0	67	26	50	5	18	1.68
49691292--49691433	27	5.0	27	78	12	133	21	15	7	55	1.65
49691292--49691438	56	2.6	56	82	10	174	21	16	7	54	1.66
49691292--49691426	28	4.8	27	80	8	135	21	15	7	55	1.64
49696509--49696729	40	5.6	39	83	3	210	25	28	21	24	1.99
49696661--49696738	40	1.9	41	82	10	97	26	28	21	23	1.99
49708654--49708729	29	2.6	28	85	10	100	26	14	28	30	1.95
49708682--49709009	174	1.9	174	95	0	593	29	14	24	31	1.94
49716777--49716849	29	2.5	30	82	14	100	27	15	28	28	1.96
49716807--49717134	174	1.9	174	96	0	602	29	14	24	30	1.95
49730873--49730911	20	2.0	20	85	10	53	38	10	12	38	1.78
49740448--49740547	26	3.9	26	81	1	121	39	24	20	17	1.92
49740676--49740742	27	2.5	27	82	4	73	25	22	16	35	1.94
49740752--49740824	27	2.7	27	91	0	119	19	15	21	43	1.87
49745132--49745417	50	5.7	50	81	4	276	21	27	20	30	1.98
49753778--49753846	23	3.1	21	64	24	52	46	10	21	21	1.81
49753778--49753913	44	3.1	45	89	5	197	44	10	19	25	1.83
49759221--49759273	24	2.2	24	93	0	88	33	13	22	30	1.92
49763217--49763249	17	1.9	17	93	0	57	51	15	12	21	1.75
49767282--49767342	3	20.3	3	96	0	113	0	1	31	67	1.01
49775276--49775301	5	5.2	5	100	0	52	19	0	0	80	0.71
49777785--49777849	28	2.3	28	97	0	121	26	23	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49777947--49777997	26	2.0	26	88	0	75	35	19	25	19	1.95
49778184--49778325	27	5.3	26	77	8	126	16	14	19	48	1.81
49779377--49779414	13	3.0	13	84	7	51	63	0	28	7	1.23
49780897--49780972	38	2.0	38	82	5	91	50	0	6	43	1.28
49787008--49787057	25	2.0	25	88	0	73	56	2	36	6	1.36
49791320--49791394	19	3.8	19	89	6	123	34	10	18	36	1.86
49791324--49791401	40	2.0	38	92	5	129	34	10	19	35	1.85
49792389--49792430	19	2.2	20	82	4	50	30	7	11	50	1.66
49794367--49794412	24	1.9	24	86	0	65	45	17	26	10	1.81
49797010--49797043	6	6.0	6	93	6	54	82	0	17	0	0.67
49797011--49797043	11	3.0	11	83	16	50	81	0	18	0	0.68
49798344--49799019	132	5.1	132	91	1	1034	28	18	23	29	1.98
49799252--49799362	19	5.6	19	85	12	161	35	10	17	36	1.84
49799252--49799368	40	3.0	39	92	5	191	35	10	17	36	1.83
49799252--49799369	59	2.0	56	85	12	159	35	10	17	36	1.84
49800298--49800336	4	9.5	4	83	5	51	23	0	5	71	1.05
49800343--49800384	19	2.2	20	82	4	50	30	7	11	50	1.66
49804004--49804059	21	2.7	21	91	0	94	25	8	37	28	1.86
49805068--49805445	187	2.0	188	97	0	722	30	18	16	33	1.94
49810033--49810221	54	3.3	54	68	18	146	42	1	3	51	1.29
49810178--49810223	16	2.9	16	78	12	51	45	0	2	52	1.13
49810208--49810244	10	3.5	11	85	10	51	43	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49810355--49810464	45	2.6	44	81	11	133	30	27	6	35	1.82
49810445--49810496	16	3.2	16	88	0	77	34	38	0	26	1.57
49811288--49811321	15	2.3	15	94	0	59	5	11	20	61	1.50
49816042--49816070	15	1.9	15	100	0	58	62	6	10	20	1.50
49817518--49817559	18	2.3	18	100	0	84	50	26	0	23	1.50
49817492--49817592	51	2.0	51	84	3	132	49	16	5	27	1.69
49817536--49817645	33	3.3	33	83	3	159	46	14	7	31	1.72
49820674--49821295	120	5.2	120	99	0	1210	44	1	6	47	1.38
49821125--49821159	18	2.0	17	88	5	52	45	0	0	54	0.99
49821514--49821581	16	4.2	16	96	0	127	38	35	0	26	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240