genome.fa.s24.2.7.7.80.10.50.1000.231.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  231  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69626587--69626665	21	3.8	19	80	12	77	39	16	7	36	1.77
69626621--69626664	21	2.1	21	100	0	88	38	13	9	38	1.77
69631477--69631514	14	2.7	15	84	16	62	39	0	13	47	1.42
69640125--69640177	21	2.4	22	87	12	74	62	0	7	30	1.23
69654662--69654710	26	2.0	25	84	8	64	59	2	2	36	1.21
69654856--69654912	26	2.2	26	81	12	64	28	3	1	66	1.18
69654894--69654936	16	2.8	16	80	16	54	30	2	0	67	1.03
69654895--69654942	15	3.1	15	80	14	53	29	2	0	68	1.01
69659736--69659775	17	2.3	18	87	8	57	25	7	0	67	1.16
69659750--69659807	21	2.9	19	78	16	57	29	3	3	63	1.27
69661410--69661437	12	2.3	12	100	0	56	57	0	0	42	0.99
69661401--69661439	18	2.1	19	86	13	55	58	0	0	41	0.98
69661433--69661462	15	2.0	15	93	0	51	56	0	0	43	0.99
69664111--69664358	50	4.8	50	84	5	275	20	29	24	26	1.99
69664110--69664358	100	2.4	104	87	7	348	20	28	24	26	1.99
69664453--69664484	13	2.5	13	94	0	55	56	12	0	31	1.37
69664694--69664752	29	2.0	29	83	6	75	30	23	1	44	1.64
69669607--69669857	73	3.5	72	91	3	400	31	19	17	31	1.95
69669792--69670028	86	2.8	85	84	7	268	35	19	17	27	1.95
69670140--69670378	74	3.3	71	86	4	329	30	18	16	33	1.94
69670396--69670568	68	2.5	70	85	4	219	33	23	14	28	1.94
69683029--69683101	21	3.5	20	77	18	69	61	1	6	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69683044--69683086	15	2.9	15	78	21	54	65	0	4	30	1.13
69683621--69683672	17	3.4	17	65	25	51	5	42	40	11	1.65
69683611--69683701	29	3.1	29	98	0	173	7	41	37	13	1.73
69684501--69684775	108	2.6	107	85	4	378	26	23	22	26	2.00
69684694--69684983	99	2.9	99	85	5	381	23	19	26	30	1.98
69689125--69689191	31	2.1	32	86	2	91	43	7	1	47	1.40
69690762--69690804	20	2.1	21	82	4	52	25	2	2	69	1.12
69701674--69701760	43	2.0	43	86	2	122	35	9	4	50	1.55
69703340--69703370	16	1.9	16	93	0	53	58	35	0	6	1.24
69707754--69707794	21	2.0	21	85	4	57	63	2	2	31	1.20
69708793--69708984	100	1.9	103	89	5	300	32	10	15	41	1.81
69709302--69709355	19	2.8	19	100	0	108	37	11	16	35	1.84
69709302--69709378	19	3.7	22	89	6	85	36	9	16	37	1.81
69709826--69709867	3	14.0	3	89	0	66	28	0	0	71	0.86
69717984--69718099	42	2.8	42	85	0	142	40	16	26	16	1.89
69718049--69718141	21	4.5	21	77	5	82	45	13	20	20	1.85
69720309--69720372	17	3.6	17	74	15	67	28	12	12	46	1.78
69720301--69720369	36	1.9	36	96	0	129	27	13	13	46	1.79
69720301--69720352	19	2.9	18	72	16	54	26	13	13	46	1.80
69725425--69725488	17	3.6	17	74	15	67	28	12	12	46	1.78
69725417--69725485	36	1.9	36	96	0	129	27	13	13	46	1.79
69725417--69725468	19	2.9	18	72	16	54	26	13	13	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69732254--69732296	19	2.3	19	100	0	86	23	20	25	30	1.99
69737219--69737261	22	2.0	22	85	0	59	55	9	13	20	1.66
69740070--69740115	15	3.0	15	78	15	58	30	0	0	69	0.89
69740746--69740779	17	1.9	18	88	5	52	50	11	0	38	1.39
69748149--69748195	24	2.0	24	83	4	60	53	12	10	23	1.70
69756586--69756627	12	3.6	12	93	3	68	76	0	9	14	1.02
69756585--69756627	11	3.6	12	87	9	61	76	0	9	13	1.01
69756586--69756632	23	2.1	22	88	11	69	72	0	12	14	1.13
69757387--69757427	17	2.4	18	80	19	52	65	0	0	34	0.93
69758475--69758517	21	2.0	21	100	0	86	23	27	9	39	1.85
69763763--69763795	15	2.1	16	88	5	50	39	0	0	60	0.97
69769019--69769211	87	2.3	84	79	7	212	39	17	9	33	1.82
69769456--69769527	19	3.7	20	75	15	78	63	0	4	31	1.13
69769456--69769527	10	7.3	10	74	12	60	63	0	4	31	1.13
69769848--69769890	19	2.3	19	80	8	52	41	0	2	55	1.12
69786511--69786545	7	5.0	7	89	0	52	14	0	2	82	0.77
69786711--69786736	7	3.7	7	100	0	52	42	15	15	26	1.87
69791082--69791131	22	2.3	22	96	0	91	32	22	28	18	1.97
69793173--69793419	69	3.6	69	79	4	248	38	15	22	24	1.92
69793569--69793616	20	2.4	20	82	6	53	43	4	2	50	1.33
69793620--69793658	19	2.1	19	95	0	69	23	5	7	64	1.40
69794469--69794517	20	2.4	21	79	6	55	0	24	2	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69806124--69806154	10	3.1	10	95	0	53	25	0	6	67	1.14
69811271--69811295	2	12.5	2	100	0	50	0	0	48	52	1.00
69834823--69834875	26	2.0	26	100	0	106	39	11	30	18	1.86
69836952--69837238	42	6.8	42	91	2	443	32	21	21	24	1.98
69836952--69837325	84	4.5	82	83	5	417	31	20	20	27	1.98
69836952--69837325	126	3.0	126	86	2	439	31	20	20	27	1.98
69837392--69837425	14	2.4	14	95	0	59	52	20	8	17	1.71
69837649--69837719	21	3.4	21	76	3	72	2	43	18	35	1.65
69843171--69843335	7	19.0	9	65	32	69	33	0	20	45	1.52
69843185--69843602	18	21.6	19	66	24	82	32	0	20	46	1.56
69843216--69843621	26	16.1	26	87	6	579	32	0	20	46	1.56
69843216--69843621	51	8.0	51	88	6	571	32	0	20	46	1.56
69843391--69843617	19	12.5	19	67	23	100	32	0	19	46	1.56
69843658--69843814	73	2.1	73	98	1	305	40	6	1	51	1.35
69843689--69843801	35	3.1	35	67	16	104	38	7	1	52	1.41
69843954--69844024	13	5.5	13	86	0	106	50	2	7	39	1.44
69843953--69844024	26	2.8	26	100	0	144	50	2	6	40	1.44
69844029--69844326	17	16.6	17	69	24	152	42	1	11	43	1.51
69844085--69844335	57	4.6	57	79	18	311	43	1	11	43	1.49
69844146--69844252	40	2.7	40	94	2	189	43	1	11	42	1.51
69845667--69845706	11	3.7	11	93	3	64	27	27	10	35	1.89
69847632--69847707	7	10.9	7	74	5	64	46	35	1	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69847748--69847797	17	3.0	17	94	2	84	50	16	0	34	1.45
69847819--69848169	113	3.1	111	80	7	402	26	23	19	30	1.98
69847949--69848351	188	2.1	188	93	0	689	27	22	18	32	1.97
69848142--69848567	114	3.7	114	79	4	464	26	23	19	30	1.98
69851274--69851339	23	2.9	22	84	13	80	22	28	19	28	1.98
69856663--69856777	42	2.7	43	82	6	153	32	26	15	25	1.96
69856663--69856824	86	1.9	84	82	11	204	30	27	16	25	1.97
69863664--69863689	2	13.0	2	100	0	52	0	50	0	50	1.00
69863742--69863791	11	4.5	11	80	11	57	30	0	0	70	0.88
69863783--69863825	4	10.5	4	97	2	77	23	0	0	76	0.78
69865145--69865184	18	2.2	19	86	4	55	15	2	12	70	1.28
69869026--69869076	20	2.6	19	81	6	75	35	13	17	33	1.89
69875064--69875102	21	1.9	21	84	5	53	51	20	5	23	1.67
69876480--69876504	10	2.5	10	100	0	50	56	0	0	44	0.99
69876488--69876532	17	2.7	16	80	10	54	55	0	0	44	0.99
69876490--69876525	17	2.1	18	89	5	56	63	0	0	36	0.94
69876464--69876520	27	2.0	30	90	10	93	57	0	0	42	0.98
69876865--69876970	10	10.7	10	67	12	67	70	0	29	0	0.87
69876881--69876973	34	2.8	34	78	15	104	69	0	30	0	0.88
69876870--69876970	44	2.3	44	81	6	125	71	0	28	0	0.86
69877513--69877542	16	1.9	15	93	6	51	70	0	3	26	1.03
69877304--69878040	296	2.4	299	85	6	923	52	7	10	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69877322--69878064	154	4.9	154	78	10	636	52	6	10	30	1.62
69879184--69879318	37	3.6	37	69	14	105	51	12	5	31	1.62
69879227--69879273	23	2.0	23	84	8	60	59	14	2	23	1.46
69879168--69879358	40	4.8	40	69	20	125	49	11	5	34	1.61
69882150--69882250	48	2.1	47	83	1	121	55	8	5	29	1.54
69882166--69882250	24	3.6	24	79	4	84	55	8	7	29	1.56
69884591--69884634	21	2.1	21	86	0	61	61	0	2	36	1.09
69884629--69884665	16	2.3	16	90	0	56	54	2	5	37	1.38
69884835--69884876	3	13.7	3	85	5	57	61	2	2	33	1.21
69888752--69888906	84	1.8	84	86	5	224	29	14	16	40	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240