genome.fa.s24.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  108  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33346620--33346738	62	1.9	62	83	6	152	22	16	20	40	1.91
33346527--33347105	133	4.3	133	81	8	666	20	18	20	40	1.92
33351518--33351569	4	13.5	4	76	15	56	0	26	1	71	0.97
33351518--33351569	23	2.3	22	84	15	70	0	26	1	71	0.97
33351616--33351670	26	2.1	26	83	6	67	23	21	1	52	1.56
33352456--33352512	19	2.8	20	81	13	62	0	24	3	71	1.01
33352456--33352507	13	3.7	14	76	7	52	0	25	1	73	0.94
33352457--33352505	19	2.6	19	87	6	64	0	22	2	75	0.90
33350640--33353537	978	3.0	943	92	4	4735	33	20	9	35	1.86
33360022--33360048	14	1.9	14	100	0	54	14	25	22	37	1.93
33360339--33360377	18	2.2	18	86	4	53	43	0	5	51	1.24
33365282--33365459	84	2.1	85	98	1	349	37	8	27	26	1.85
33366625--33366809	40	4.6	39	82	6	203	23	21	28	26	1.99
33366626--33366842	79	2.7	80	81	6	246	25	21	27	25	1.99
33371912--33372090	85	2.1	85	100	0	358	37	8	27	26	1.85
33373255--33373437	79	2.3	81	84	7	232	24	22	27	25	2.00
33373256--33373439	40	4.6	40	83	9	216	23	22	28	25	2.00
33373308--33373472	79	2.1	79	84	6	210	25	21	27	25	1.99
33374824--33374853	14	2.1	14	100	0	60	16	30	26	26	1.97
33375422--33375456	18	1.9	18	100	0	70	34	11	17	37	1.85
33375507--33375543	18	2.1	18	94	0	65	51	13	5	29	1.63
33375757--33375816	30	2.0	31	86	3	86	18	35	1	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33380949--33380987	19	2.1	19	85	9	53	61	0	33	5	1.18
33387249--33387292	23	1.9	23	86	9	63	20	15	22	40	1.90
33388878--33388922	18	2.6	16	82	10	54	46	0	37	15	1.46
33391956--33392009	24	2.2	24	93	0	90	51	7	5	35	1.53
33393352--33393542	43	4.5	42	84	3	177	26	33	19	20	1.96
33393345--33393542	86	2.3	85	83	4	245	25	34	19	20	1.96
33394274--33394325	23	2.3	23	79	0	59	34	9	28	26	1.88
33396468--33396529	31	2.0	31	96	0	115	46	22	17	12	1.82
33398850--33398912	28	2.3	28	77	2	74	36	41	0	22	1.54
33399420--33399610	41	4.7	40	85	8	251	28	29	21	19	1.98
33400546--33400597	24	2.2	24	86	6	70	51	5	7	34	1.54
33412469--33412816	174	2.0	174	100	0	696	32	21	15	30	1.95
33412783--33412884	18	5.8	17	72	18	75	20	24	23	31	1.98
33412843--33412905	18	3.5	18	80	4	56	30	23	20	25	1.99
33419882--33419927	21	2.3	20	78	14	51	45	17	6	30	1.73
33420167--33420203	18	2.0	19	89	5	58	51	0	43	5	1.24
33424306--33424367	30	2.1	30	87	6	90	48	11	8	32	1.68
33431436--33431662	40	5.7	40	96	0	418	29	20	27	22	1.98
33439493--33439719	40	5.7	40	96	0	418	29	20	27	22	1.98
33442859--33442904	21	2.3	20	78	14	51	45	17	4	32	1.68
33443281--33443326	21	2.3	20	78	14	51	45	17	4	32	1.68
33442706--33443549	422	2.0	422	97	0	1580	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33447102--33447144	13	3.5	12	82	14	52	25	6	2	65	1.30
33451500--33451819	27	11.9	27	83	5	339	20	17	19	42	1.90
33453298--33453472	89	2.0	88	87	5	255	40	18	14	25	1.89
33457873--33457936	31	2.1	31	87	0	92	42	18	17	21	1.89
33457906--33458105	81	2.5	81	89	4	305	44	19	16	20	1.87
33457905--33458118	27	7.9	27	83	8	238	42	20	15	21	1.88
33457874--33458107	54	4.3	54	84	6	276	43	19	17	20	1.89
33461587--33461672	31	2.9	30	79	5	93	40	15	11	32	1.83
33462704--33462744	19	2.2	19	90	0	64	34	4	7	53	1.50
33478238--33478262	12	2.1	12	100	0	50	16	24	36	24	1.94
33506387--33506430	6	7.0	6	80	10	52	75	0	0	25	0.81
33506388--33506432	20	2.3	19	88	7	72	75	0	0	24	0.80
33507841--33507905	29	2.2	30	86	5	87	46	0	3	50	1.17
33508879--33508937	31	1.9	31	89	0	91	54	10	15	20	1.70
33517905--33517935	16	1.9	16	93	0	53	6	12	3	77	1.08
33518073--33518140	34	2.0	35	91	2	111	22	30	23	23	1.99
33520356--33520483	64	2.0	64	84	0	166	34	22	19	23	1.97
33525161--33525382	50	4.3	50	78	10	189	21	28	22	27	1.99
33525153--33525381	100	2.2	100	81	9	239	21	28	22	27	1.99
33528715--33528831	50	2.3	49	82	5	128	27	23	27	22	1.99
33529416--33529478	31	2.0	31	96	0	117	41	3	17	38	1.65
33532139--33532195	28	2.1	28	90	6	91	71	1	1	24	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33536790--33536814	12	2.1	12	100	0	50	16	0	32	52	1.44
33544739--33544770	15	2.1	15	100	0	64	75	0	0	25	0.81
33544735--33544776	21	2.0	21	90	0	66	71	0	0	28	0.86
33549195--33549397	89	2.3	85	82	6	228	45	11	12	30	1.78
33555994--33556028	14	2.8	12	87	12	52	28	8	0	62	1.24
33560492--33560563	9	7.9	9	80	9	83	43	0	54	2	1.15
33560494--33560563	3	23.0	3	74	8	52	41	0	55	2	1.14
33565379--33565565	101	1.8	101	88	5	288	24	17	26	31	1.97
33565376--33565561	51	3.7	50	82	4	205	24	17	26	31	1.97
33565572--33565658	45	1.9	45	95	0	156	25	17	24	33	1.96
33574099--33574131	3	11.0	3	93	0	57	66	30	3	0	1.06
33581582--33581611	15	1.9	15	93	6	51	43	0	0	56	0.99
33581839--33581902	33	1.9	33	93	0	110	26	9	12	51	1.70
33597518--33597570	19	2.9	19	83	10	58	18	7	0	73	1.06
33597518--33597558	19	2.2	20	86	8	59	19	7	0	73	1.07
33600668--33600700	3	11.0	3	100	0	66	66	0	0	33	0.92
33604256--33604290	15	2.3	15	90	0	52	31	2	0	65	1.07
33616468--33616515	20	2.4	20	85	0	60	31	25	12	31	1.92
33628142--33628257	59	2.0	59	94	0	205	21	20	18	38	1.93
33629850--33629929	35	2.3	35	86	0	106	25	17	26	31	1.97
33630846--33631119	78	3.6	77	80	6	281	27	14	13	44	1.82
33640918--33640948	16	1.9	16	93	0	53	6	16	19	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33648293--33648386	17	5.5	18	68	22	60	54	1	3	41	1.23
33648254--33648393	68	2.0	72	86	9	200	52	2	2	41	1.31
33654089--33654295	102	2.0	103	92	0	344	41	21	10	27	1.85
33654851--33654927	38	2.1	36	83	11	93	50	2	2	44	1.29
33658644--33658690	26	1.9	26	87	12	73	14	8	8	68	1.39
33663253--33663325	16	4.6	16	75	1	76	41	2	27	28	1.70
33674249--33674281	11	3.1	11	91	4	50	66	3	0	30	1.06
33675545--33675716	50	3.5	50	71	4	150	22	25	22	30	1.99
33675595--33676068	50	9.5	50	65	7	217	23	24	22	29	1.99
33675521--33676079	100	5.6	100	86	2	755	23	24	22	29	1.99
33677482--33677531	14	3.5	14	82	17	59	14	12	0	74	1.09
33677482--33677531	7	7.0	7	75	20	50	14	12	0	74	1.09
33684141--33684166	11	2.4	11	100	0	52	65	0	0	34	0.93
33684409--33684470	25	2.5	25	94	0	106	40	16	27	16	1.89
33713913--33714107	35	5.6	35	83	1	223	40	16	22	20	1.91
33713915--33714107	69	2.8	69	85	0	242	40	17	21	20	1.91
33713913--33714106	104	1.9	103	89	3	300	40	17	22	20	1.91
33714304--33714343	10	4.1	10	80	6	55	35	15	7	42	1.75
33714343--33714385	22	2.0	21	90	4	68	37	4	4	53	1.43
33714406--33714457	27	1.9	27	100	0	104	23	30	19	26	1.98
33718599--33718641	21	2.0	23	81	9	54	44	11	11	32	1.77
33727256--33727371	42	2.8	42	75	10	112	28	25	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33728826--33728938	42	2.7	42	76	5	113	24	26	28	20	1.99
33748451--33748529	37	2.1	37	83	0	95	17	10	29	43	1.82
33750371--33750595	40	5.7	40	84	7	262	24	27	22	25	2.00
33750373--33750595	119	1.9	120	83	6	292	24	27	22	25	2.00
33764821--33765060	120	2.0	120	89	3	367	33	15	24	27	1.95
33767820--33767907	31	2.8	31	78	10	99	23	20	13	42	1.88
33777445--33777536	23	3.9	23	71	15	62	34	22	21	20	1.96
33789032--33789058	4	6.8	4	100	0	54	25	0	25	48	1.52
33790882--33790921	5	8.0	5	94	0	71	40	57	0	2	1.12
33791833--33791917	38	2.2	40	89	4	129	52	5	1	40	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240