genome.fa.s24.2.7.7.80.10.50.1000.239.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  239  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72553676--72553804	60	2.2	59	85	1	186	36	17	10	36	1.83
72555276--72555301	8	3.2	8	100	0	52	65	11	0	23	1.25
72565335--72565375	21	2.0	21	90	0	64	29	21	29	19	1.98
72569591--72569634	23	1.9	23	85	0	61	27	2	2	68	1.14
72569643--72569729	20	4.6	19	76	18	67	36	1	4	57	1.27
72569646--72569720	19	3.9	19	82	8	91	37	1	5	56	1.31
72573198--72573232	18	1.9	18	94	0	61	51	0	5	42	1.25
72575185--72575212	14	2.0	14	100	0	56	35	0	21	42	1.53
72575450--72575644	95	2.1	94	90	3	304	41	10	13	33	1.80
72586918--72587297	188	2.0	188	92	2	629	45	13	15	26	1.82
72588850--72588994	72	2.0	72	100	0	290	44	16	8	30	1.77
72590624--72590661	19	2.0	19	90	10	60	68	0	0	31	0.90
72592062--72592103	17	2.5	17	82	17	52	33	16	4	45	1.69
72594372--72594428	25	2.3	25	96	0	105	29	5	10	54	1.56
72598586--72598632	17	2.8	17	76	0	58	55	2	0	42	1.12
72598801--72598871	35	2.0	35	100	0	142	45	8	14	32	1.74
72607841--72607899	26	2.4	25	86	13	79	28	1	10	59	1.40
72611271--72611336	29	2.5	25	88	11	96	40	0	0	59	0.98
72612318--72612378	12	5.4	11	75	9	52	70	1	1	26	1.06
72615511--72615571	29	2.1	29	82	11	72	18	4	6	70	1.27
72616388--72616428	22	1.9	22	85	5	57	24	17	2	56	1.53
72618259--72618289	16	1.9	16	100	0	62	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72622215--72622430	104	2.1	102	85	5	292	52	14	17	15	1.74
72622812--72622850	15	2.6	15	84	8	53	46	2	33	17	1.62
72622812--72622852	16	2.6	16	84	3	57	46	4	31	17	1.69
72624419--72624477	26	2.2	28	85	11	79	52	3	3	40	1.35
72626743--72626772	10	3.0	10	95	0	51	40	0	3	56	1.16
72630057--72630104	19	2.6	18	81	15	53	62	0	4	33	1.14
72630116--72630147	16	2.0	16	100	0	64	31	12	12	43	1.80
72634823--72634862	16	2.5	16	100	0	80	32	0	20	47	1.50
72635836--72636214	174	2.2	173	86	5	523	35	7	17	40	1.77
72636181--72636283	52	2.0	52	96	0	188	45	5	10	37	1.63
72636813--72636861	24	2.0	25	84	11	66	65	2	0	32	1.04
72643616--72643657	8	5.4	8	78	16	52	0	26	9	64	1.24
72646297--72646915	153	4.1	151	86	5	844	29	9	7	53	1.61
72647155--72647198	18	2.4	18	100	0	88	56	0	0	43	0.99
72650634--72650671	12	3.2	12	92	0	58	28	42	26	2	1.69
72654746--72654798	12	4.4	12	86	9	72	26	43	28	1	1.65
72662443--72662477	11	3.2	11	88	11	54	0	54	0	45	0.99
72662944--72663014	3	23.3	3	74	8	63	30	1	5	61	1.27
72662956--72663017	23	2.8	22	87	4	81	32	1	8	58	1.37
72662951--72663025	23	3.2	23	80	10	64	32	2	9	56	1.45
72665089--72665195	4	24.8	4	78	19	101	3	25	0	71	1.03
72665076--72665197	24	5.2	24	72	19	64	4	26	0	69	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72665084--72665203	20	6.5	18	80	17	108	3	27	0	69	1.04
72665089--72665187	44	2.4	43	86	9	143	4	25	0	70	1.04
72665084--72665213	10	12.9	10	73	18	67	3	28	0	68	1.04
72666441--72666620	69	2.6	69	81	1	209	27	27	18	26	1.98
72666640--72666715	32	2.4	32	84	2	100	31	23	15	28	1.96
72667638--72667670	15	2.2	15	100	0	66	36	6	12	45	1.66
72672973--72673019	21	2.3	21	96	3	87	12	17	0	70	1.17
72678502--72678573	25	2.9	25	75	10	76	30	5	8	55	1.52
72678504--72678596	25	3.6	24	73	18	71	30	5	8	55	1.52
72682097--72682127	16	2.0	16	93	6	55	38	0	0	61	0.96
72682132--72682188	29	2.1	28	83	9	73	52	5	1	40	1.34
72682072--72682341	148	1.8	148	92	0	459	46	1	4	47	1.29
72682290--72682340	13	3.3	16	71	18	54	47	0	1	50	1.12
72683559--72683607	11	4.5	11	79	5	55	28	12	0	59	1.34
72688878--72688945	31	2.2	32	89	7	104	26	5	17	50	1.69
72694304--72694378	29	2.5	29	82	4	87	48	14	12	25	1.78
72698854--72699404	292	1.9	293	88	3	851	34	19	15	31	1.92
72700653--72700699	3	15.7	3	100	0	94	34	0	34	31	1.58
72704672--72704709	17	2.4	16	87	12	60	76	15	0	7	1.01
72718411--72718437	12	2.2	12	100	0	54	44	0	0	55	0.99
72718528--72718552	7	3.6	7	100	0	50	84	0	0	16	0.63
72726631--72726684	20	2.6	21	77	11	58	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72727945--72727985	18	2.2	19	87	12	59	60	4	7	26	1.43
72731384--72731418	18	1.9	18	94	0	61	25	20	2	51	1.61
72737216--72737742	200	2.6	199	86	1	725	37	22	12	27	1.91
72739715--72739768	26	2.1	26	83	13	67	38	0	1	59	1.08
72746176--72746236	23	2.7	22	68	12	52	44	3	6	45	1.46
72746902--72746927	7	3.7	7	100	0	52	61	0	0	38	0.96
72752814--72752841	13	2.2	13	100	0	56	25	17	21	35	1.95
72771794--72771931	67	2.1	67	100	0	276	31	18	10	39	1.84
72773813--72773910	48	2.0	48	100	0	196	36	8	10	44	1.68
72773822--72773895	21	3.2	21	65	31	53	37	6	9	45	1.63
72774016--72774043	14	2.0	14	100	0	56	28	14	21	35	1.92
72778163--72778357	92	2.1	93	97	1	365	30	10	13	45	1.77
72788049--72788113	32	2.0	32	100	0	130	50	0	12	36	1.40
72789316--72789379	22	3.0	21	77	13	60	51	10	12	25	1.72
72790575--72790610	18	1.9	19	88	5	56	33	8	0	58	1.28
72791369--72791398	15	1.9	16	93	6	53	86	0	0	13	0.57
72792531--72792940	167	2.4	167	90	2	633	41	17	15	24	1.88
72799590--72799630	13	3.2	12	89	6	55	14	4	0	80	0.87
72806037--72806081	22	2.0	22	82	0	54	66	2	2	28	1.15
72814861--72815568	191	3.7	191	83	5	851	31	16	18	32	1.94
72815415--72815718	155	2.0	154	84	4	407	32	14	19	32	1.92
72815571--72816095	194	2.7	192	90	2	793	31	16	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72817377--72817412	18	1.9	19	88	5	56	41	2	0	55	1.14
72824184--72824241	31	1.9	31	85	3	82	44	13	8	32	1.75
72829698--72829735	18	2.1	19	85	5	51	13	10	2	73	1.19
72842751--72842823	31	2.4	30	79	4	76	42	8	12	36	1.72
72844096--72844133	5	7.6	5	100	0	76	63	0	0	36	0.95
72863118--72863183	29	2.3	29	87	10	91	45	13	3	37	1.59
72863704--72863738	4	8.8	4	100	0	70	25	0	25	48	1.51
72867037--72867106	30	2.3	29	85	9	88	44	5	10	40	1.62
72867058--72867114	29	1.9	29	92	3	96	45	8	8	36	1.66
72870388--72871011	221	2.8	221	88	2	891	21	18	20	39	1.93
72871881--72871927	22	2.1	22	92	0	76	42	10	6	40	1.65
72871880--72871919	10	3.8	10	81	12	53	47	10	2	40	1.50
72872495--72872571	38	2.0	40	89	5	122	66	2	3	27	1.22
72873029--72873087	31	1.9	31	86	13	86	59	3	3	33	1.31
72874213--72874255	15	2.7	15	82	10	50	60	0	0	39	0.97
72874216--72874267	16	3.3	16	78	5	61	53	0	0	46	1.00
72875848--72875907	31	1.9	31	86	0	84	38	10	13	38	1.78
72885651--72885722	34	2.1	35	82	7	85	55	4	5	34	1.42
72889301--72889362	4	15.5	4	89	0	52	38	25	11	24	1.88
72889301--72889362	12	5.2	12	82	0	61	38	25	11	24	1.88
72891176--72891594	209	2.0	210	94	1	743	21	17	22	37	1.94
72892441--72892471	14	2.1	15	94	5	55	32	0	6	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72897560--72897658	48	2.1	48	94	0	171	35	14	13	37	1.84
72898690--72898769	31	2.6	31	82	4	99	41	18	15	25	1.89
72898725--72898874	59	2.5	60	77	5	151	44	18	13	24	1.85
72903397--72903427	7	4.4	7	91	0	53	12	3	0	83	0.75
72903438--72903501	27	2.5	26	87	7	96	31	1	0	67	1.00
72903399--72903497	38	2.6	38	79	9	128	25	2	1	71	1.03
72904868--72904927	26	2.3	26	88	2	93	28	1	0	70	0.97
72904870--72904937	25	2.6	26	83	4	66	25	1	4	69	1.16
72910620--72910655	16	2.2	17	90	5	56	72	5	0	22	1.05
72915722--72915771	17	2.7	20	78	18	70	10	0	44	46	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240