genome.fa.s24.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  155  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48917794--48918005	118	1.8	117	95	1	388	35	14	19	30	1.91
48924536--48924574	18	2.1	19	86	13	55	33	12	17	35	1.88
48924613--48924643	15	2.1	15	100	0	62	32	19	12	35	1.90
48927490--48927539	23	2.2	23	82	7	57	60	2	10	28	1.40
48928325--48928376	12	4.1	12	75	22	52	65	1	3	28	1.21
48928237--48928430	19	10.3	19	68	13	89	62	3	3	30	1.27
48931290--48931320	13	2.4	13	100	0	62	25	0	38	35	1.56
48951300--48951354	18	2.9	19	73	15	60	27	1	0	70	0.97
48952370--48952402	17	1.9	17	93	0	57	87	3	9	0	0.63
48952370--48952403	9	3.7	9	88	4	50	88	2	8	0	0.62
48956913--48956974	28	2.2	29	79	2	72	53	12	6	27	1.63
48963282--48963320	19	2.1	19	100	0	78	38	20	15	25	1.92
48964897--48965068	40	4.3	40	88	2	222	25	27	21	25	1.99
48964897--48965111	80	2.7	79	79	5	227	26	27	20	25	1.99
48965053--48965130	40	1.9	41	82	10	97	26	26	19	26	1.99
48966851--48966986	51	2.7	51	78	0	164	39	6	11	41	1.68
48968219--48968290	5	14.8	5	74	21	64	38	0	4	56	1.18
48968248--48968290	19	2.3	19	92	8	70	41	0	0	58	0.98
48968295--48968334	18	2.2	19	90	4	64	80	2	15	2	0.93
48969204--48969337	44	3.0	45	83	4	162	35	13	23	27	1.93
48970267--48970916	326	2.0	327	99	0	1275	31	14	22	31	1.94
48974693--48974764	5	14.8	5	74	21	64	38	0	4	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48974722--48974764	19	2.3	19	92	8	70	41	0	0	58	0.98
48974769--48974808	18	2.2	19	90	4	64	80	2	15	2	0.93
48975678--48975811	44	3.0	45	83	4	162	35	13	23	27	1.93
48978915--48979050	51	2.7	51	78	0	164	39	6	11	41	1.68
48981954--48982016	27	2.3	27	83	5	74	14	22	23	39	1.91
48983736--48983764	6	4.8	6	100	0	58	48	0	0	51	1.00
48984161--48984209	25	2.0	24	84	11	64	26	4	6	63	1.36
49002007--49002053	21	2.2	22	92	3	78	21	38	19	21	1.94
49005838--49005931	49	1.9	49	86	0	134	27	25	19	27	1.99
49007541--49007635	49	2.0	48	85	8	131	53	10	7	28	1.62
49010568--49010635	16	4.0	16	75	17	66	1	14	1	82	0.82
49010569--49010635	18	3.9	16	81	12	71	1	13	1	83	0.79
49010569--49010635	17	3.8	19	81	11	72	1	13	1	83	0.79
49010578--49010632	25	2.2	24	87	3	74	1	12	1	83	0.80
49010569--49010635	36	1.9	34	87	6	98	1	13	1	83	0.79
49020070--49020107	19	2.0	19	85	10	51	21	39	2	36	1.67
49031974--49032038	28	2.3	28	94	0	112	26	24	12	36	1.91
49040037--49040093	27	2.1	27	100	0	114	29	29	10	29	1.90
49049104--49049154	21	2.4	21	77	6	59	33	7	31	27	1.85
49053800--49053851	23	2.3	22	75	21	54	9	23	1	65	1.32
49059242--49059276	18	1.9	18	88	0	52	5	11	0	82	0.82
49066266--49066298	13	2.7	13	90	9	52	36	12	15	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49066977--49067034	30	1.9	31	89	3	91	43	6	18	31	1.77
49067498--49067841	102	3.4	101	89	2	478	28	16	26	28	1.97
49067498--49067840	51	6.8	50	81	5	377	28	16	26	28	1.97
49071726--49071764	18	2.2	18	85	0	51	61	2	23	12	1.43
49073163--49073191	12	2.3	13	94	5	51	24	0	0	75	0.80
49075063--49075123	29	2.1	28	82	8	70	54	4	4	36	1.44
49075345--49075383	18	2.1	19	90	4	62	69	5	2	23	1.21
49077057--49077186	45	2.9	45	83	0	161	23	26	21	28	1.99
49077242--49077340	44	2.2	44	85	3	128	26	24	19	30	1.98
49077378--49077902	267	2.0	267	87	0	771	25	26	20	27	1.99
49082134--49082172	18	2.1	19	90	4	62	69	5	2	23	1.21
49083510--49083668	27	5.9	27	86	7	189	21	19	20	38	1.94
49083510--49083668	81	2.0	81	86	5	223	21	19	20	38	1.94
49086412--49086669	27	9.5	27	86	4	340	18	17	20	43	1.89
49086411--49086692	136	2.1	135	87	4	406	19	17	20	42	1.89
49088277--49088469	50	3.8	50	88	0	260	22	31	21	24	1.98
49091433--49091468	18	2.0	18	94	0	63	30	11	8	50	1.67
49091967--49092190	121	1.9	121	90	3	362	28	15	15	41	1.87
49097863--49097893	16	1.9	16	100	0	62	32	12	3	51	1.56
49100799--49100953	72	2.1	73	91	3	260	25	14	30	29	1.95
49109356--49109598	50	4.8	50	87	1	335	24	20	31	23	1.98
49130132--49130176	15	3.0	15	83	6	56	71	13	4	11	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49139051--49139079	14	2.0	15	93	6	51	44	0	0	55	0.99
49139368--49139428	28	2.2	28	93	0	104	26	45	19	8	1.78
49141088--49141220	69	1.9	70	90	1	214	32	14	16	36	1.89
49143000--49143239	48	5.0	48	92	2	390	34	6	28	30	1.82
49143000--49143239	98	2.5	96	89	2	390	34	6	28	30	1.82
49143375--49143489	37	3.1	37	89	2	169	26	17	28	26	1.98
49150114--49150209	39	2.5	39	85	0	129	20	34	13	31	1.92
49160744--49160965	111	2.0	111	100	0	444	33	11	15	39	1.83
49161258--49161351	25	3.7	25	68	13	75	35	6	7	51	1.56
49161270--49161375	51	2.1	51	100	0	212	37	3	9	49	1.53
49161542--49161608	34	1.9	35	90	3	109	46	10	8	34	1.70
49162659--49162708	24	2.1	23	85	10	66	36	0	2	62	1.07
49162683--49162722	15	2.4	18	80	16	50	37	0	2	60	1.11
49162682--49162845	60	2.8	57	84	10	192	42	1	2	53	1.21
49162988--49163024	18	2.2	18	85	9	51	37	18	8	35	1.81
49169023--49169535	253	2.0	255	98	0	994	35	25	5	33	1.80
49175619--49175673	25	2.2	25	93	6	94	56	0	3	40	1.17
49176491--49176547	28	2.0	29	93	3	98	57	12	8	21	1.61
49181649--49181697	20	2.5	20	86	0	71	16	22	4	57	1.56
49182371--49182429	21	2.7	22	74	10	59	44	13	8	33	1.74
49184112--49184146	18	1.9	18	88	0	52	42	11	17	28	1.83
49189280--49189309	16	1.9	16	93	6	53	43	3	0	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49195526--49195911	27	14.3	27	84	6	471	39	17	16	27	1.91
49195526--49195936	81	5.1	81	85	5	528	38	17	17	27	1.91
49196078--49196166	27	3.3	27	81	7	83	20	30	20	29	1.97
49200809--49200901	20	4.7	20	70	10	64	17	27	21	33	1.96
49203415--49203479	27	2.4	27	78	2	67	29	27	24	18	1.98
49203585--49203658	26	2.8	26	83	6	87	41	20	20	17	1.90
49203831--49204138	27	11.4	27	85	2	395	17	19	18	44	1.87
49213913--49214019	25	4.4	24	74	8	90	32	19	23	24	1.97
49217132--49217349	27	8.1	27	79	6	93	20	15	24	39	1.91
49217168--49217364	27	7.3	27	82	3	236	17	15	24	41	1.89
49220732--49220881	27	5.6	27	86	1	194	17	16	20	45	1.86
49220732--49220881	81	1.9	81	88	2	230	17	16	20	45	1.86
49224260--49224420	27	6.0	27	81	4	155	19	15	21	44	1.87
49224260--49224420	54	3.0	54	81	5	182	19	15	21	44	1.87
49224271--49224420	81	1.9	81	85	5	214	18	16	20	46	1.85
49227804--49227952	81	1.9	80	89	1	235	17	16	20	45	1.85
49227804--49227952	27	5.6	27	86	4	194	17	16	20	45	1.85
49236406--49236452	24	1.9	24	86	4	67	36	0	38	25	1.56
49237615--49237788	80	2.2	81	90	3	271	41	17	18	21	1.90
49237615--49237797	27	6.8	27	84	3	217	40	19	18	22	1.91
49243150--49243258	57	1.9	57	96	0	200	51	20	3	24	1.63
49244053--49244088	17	2.1	18	89	5	56	13	33	27	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49247310--49247409	26	3.9	26	85	1	112	38	20	20	22	1.94
49247576--49247733	27	5.9	27	87	1	210	18	16	20	44	1.87
49247576--49247742	81	2.1	81	87	4	239	19	16	19	44	1.86
49250418--49250489	31	2.3	32	95	2	128	50	13	19	16	1.79
49255552--49255793	50	4.7	50	75	8	161	28	21	26	24	1.99
49256453--49256688	118	2.0	118	89	3	359	38	9	19	33	1.83
49273093--49273541	224	2.0	224	96	0	835	27	27	18	26	1.98
49281776--49282001	46	4.9	46	77	2	195	27	18	23	30	1.97
49285401--49285433	16	2.1	16	100	0	66	33	36	24	6	1.80
49293151--49293197	18	2.8	17	78	12	60	55	0	4	40	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240