genome.fa.s24.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  144  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45181254--45181285	15	2.1	15	94	0	55	15	0	0	84	0.63
45181257--45181287	16	1.9	16	93	0	53	16	0	0	83	0.64
45184792--45184840	23	2.3	22	82	10	66	57	12	0	30	1.36
45184813--45184906	45	2.2	42	80	16	104	65	6	0	27	1.16
45193149--45193508	180	2.0	179	97	0	675	30	23	14	32	1.94
45193845--45193886	9	4.7	9	77	11	50	45	2	0	52	1.13
45194946--45195035	2	45.0	2	97	0	171	1	0	48	50	1.08
45196981--45197025	20	2.2	21	84	11	58	62	8	2	26	1.37
45199813--45199898	46	1.9	44	85	4	118	33	22	19	24	1.97
45200669--45200706	20	1.9	20	100	0	76	44	21	7	26	1.79
45208459--45208495	19	1.9	19	88	0	56	54	16	13	16	1.72
45212497--45212540	22	2.0	22	90	0	70	40	11	6	40	1.68
45215261--45215551	50	5.7	50	92	2	438	21	31	21	25	1.98
45215211--45215543	100	3.3	100	87	2	351	22	30	21	25	1.99
45221349--45221584	50	4.6	50	86	5	285	24	30	19	26	1.98
45226396--45226657	39	6.7	40	87	7	328	25	22	27	24	2.00
45228025--45228113	31	2.9	31	76	10	83	40	13	25	20	1.89
45229745--45229804	27	2.2	27	87	0	84	25	25	15	35	1.94
45229792--45229848	27	2.1	27	86	0	78	22	21	10	45	1.82
45230031--45230100	27	2.6	27	84	4	79	27	21	17	34	1.95
45230213--45230309	50	1.9	50	80	0	113	29	22	13	34	1.92
45233447--45233496	20	2.5	20	86	0	64	34	6	4	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45234222--45234262	21	2.0	21	85	0	55	24	26	4	43	1.74
45237079--45237131	26	2.0	26	82	13	65	16	1	15	66	1.35
45243509--45243560	27	1.9	27	88	0	77	17	19	38	25	1.93
45245301--45245348	25	1.9	25	82	0	60	37	0	2	60	1.09
45245375--45245540	86	1.9	85	79	6	183	47	3	8	40	1.51
45246209--45246246	14	2.6	14	84	15	51	47	0	0	52	1.00
45246598--45246629	6	5.3	6	100	0	64	15	0	0	84	0.63
45250399--45250469	28	2.5	28	95	0	133	21	36	7	35	1.80
45252920--45253097	27	6.6	27	84	3	205	29	28	15	26	1.96
45252941--45253096	82	1.9	81	88	3	233	29	28	15	26	1.96
45256113--45256142	14	2.1	14	100	0	60	36	0	0	63	0.95
45256398--45256490	44	2.1	44	90	6	143	36	24	4	34	1.75
45256472--45256511	16	2.5	16	95	0	71	27	27	7	37	1.84
45258799--45258908	41	2.7	42	80	8	136	28	30	20	21	1.98
45275860--45275940	40	2.0	40	100	0	162	41	18	7	32	1.78
45276508--45276570	32	2.0	32	90	3	101	57	23	0	19	1.41
45279929--45280030	29	3.5	29	81	2	80	34	16	16	32	1.92
45292938--45292966	10	3.0	10	95	5	51	51	0	10	37	1.36
45293205--45293326	36	3.4	36	72	15	106	20	16	27	36	1.94
45293193--45293357	73	2.3	73	81	4	181	21	15	27	36	1.93
45295368--45295438	25	2.8	25	82	4	81	28	26	16	28	1.97
45295368--45295459	25	3.8	24	77	12	80	29	27	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45301028--45301065	14	2.7	14	91	0	58	39	10	18	31	1.85
45301605--45301645	13	2.8	16	82	17	54	41	0	0	58	0.98
45302595--45302750	29	5.4	28	83	5	161	37	21	15	25	1.93
45307129--45307271	47	3.0	47	98	0	277	16	17	23	41	1.89
45315612--45315676	32	2.0	32	96	0	121	49	6	20	24	1.71
45317793--45317819	12	2.2	12	100	0	54	40	0	11	48	1.39
45318211--45318258	25	2.0	25	91	4	80	52	4	4	39	1.40
45318211--45318258	24	2.0	23	88	8	69	52	4	4	39	1.40
45318756--45318804	20	2.3	20	83	16	64	40	0	8	51	1.32
45319688--45319724	16	2.3	17	81	13	51	56	0	2	40	1.13
45320073--45320134	23	2.4	25	80	17	74	45	4	6	43	1.51
45320231--45320262	16	1.9	17	93	6	57	31	3	6	59	1.38
45320269--45320315	18	2.4	20	75	17	53	42	6	4	46	1.48
45325562--45325592	11	2.8	11	95	0	53	70	6	6	16	1.29
45338608--45338648	21	1.9	22	90	5	66	58	17	2	21	1.50
45342870--45343041	76	2.3	75	84	6	231	19	38	2	38	1.65
45346183--45346239	22	2.5	23	80	2	71	43	33	1	21	1.63
45348265--45348291	13	2.1	13	100	0	54	51	0	11	37	1.37
45348342--45348430	9	10.6	9	71	16	57	46	17	1	34	1.56
45354330--45354396	32	2.2	32	89	5	111	22	8	34	34	1.85
45354361--45354643	43	6.6	43	82	1	282	25	15	27	31	1.95
45358655--45358805	41	3.7	41	81	5	162	25	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45362015--45362051	19	2.1	19	90	10	60	24	10	8	56	1.60
45367878--45368059	28	6.5	28	95	0	294	32	28	12	26	1.92
45383909--45384604	47	14.6	47	92	2	1088	33	8	28	29	1.87
45383909--45384604	96	7.3	95	92	2	1103	33	8	28	29	1.87
45383909--45384604	288	2.4	288	95	0	1236	33	8	28	29	1.87
45386575--45386611	15	2.5	15	95	0	65	0	21	0	78	0.75
45396372--45396820	47	9.5	47	94	0	763	29	29	8	32	1.87
45398214--45398238	13	1.9	13	100	0	50	36	16	16	32	1.90
45405866--45406047	27	5.6	33	72	21	136	34	27	18	19	1.95
45405818--45406052	102	2.3	103	91	0	373	32	27	18	21	1.97
45409346--45409392	19	2.4	18	80	19	51	63	6	8	21	1.44
45415431--45415502	26	2.7	27	84	2	83	30	20	25	23	1.99
45418603--45418680	25	3.1	25	84	0	102	30	24	14	30	1.94
45418614--45418700	25	3.5	25	77	14	90	29	22	18	28	1.97
45418858--45418907	26	2.0	25	84	7	66	40	6	16	38	1.73
45421298--45421347	22	2.4	21	80	9	57	20	18	20	42	1.90
45421325--45421409	20	4.0	20	71	14	71	11	20	25	42	1.86
45421357--45421433	25	3.3	24	66	17	63	10	18	27	44	1.82
45421334--45421434	45	2.2	45	92	3	168	10	20	26	41	1.85
45421373--45421445	25	3.2	23	73	21	73	13	17	24	43	1.86
45421403--45421457	25	2.2	25	84	12	69	12	18	23	45	1.83
45422728--45422800	26	2.8	26	89	0	92	36	23	24	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45422973--45423337	27	13.5	27	82	5	323	20	18	18	42	1.89
45422973--45423337	81	4.5	82	81	4	377	20	18	18	42	1.89
45439882--45439973	20	4.7	19	71	4	67	40	16	30	13	1.86
45439882--45440070	40	4.8	40	82	3	202	40	19	26	13	1.89
45439907--45440055	79	1.9	81	90	2	239	38	18	28	14	1.90
45444311--45444347	19	1.9	19	94	0	65	48	13	8	29	1.71
45446116--45446168	18	2.9	18	91	0	79	7	22	1	67	1.25
45446123--45446202	36	2.2	36	82	8	92	7	18	1	72	1.15
45446122--45446184	6	10.2	6	72	6	54	6	17	1	74	1.10
45447936--45448001	21	2.9	23	68	21	57	31	16	10	40	1.83
45448089--45448237	74	2.0	75	88	1	219	47	20	5	26	1.71
45448314--45448439	54	2.3	54	94	0	225	42	14	10	32	1.79
45448378--45448416	19	2.1	19	95	0	69	48	12	10	28	1.74
45465586--45465610	11	2.3	11	100	0	50	40	24	8	28	1.83
45473459--45473500	13	3.3	12	87	12	50	66	0	0	33	0.92
45476712--45476814	52	2.0	50	85	7	136	29	13	11	45	1.79
45477652--45477762	58	1.9	58	100	0	222	18	16	20	44	1.87
45480987--45481024	20	1.9	20	88	0	58	36	5	5	52	1.47
45481476--45481527	25	2.1	25	100	0	104	40	17	3	38	1.68
45481891--45481939	19	2.4	21	86	6	66	69	8	4	18	1.30
45482191--45482230	19	2.2	19	86	4	55	55	0	5	40	1.22
45495716--45495771	23	2.5	23	97	2	105	73	8	0	17	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45495716--45495771	11	5.0	11	95	4	103	73	8	0	17	1.08
45495813--45495871	16	3.6	16	95	4	100	62	5	11	20	1.47
45495815--45495871	18	3.3	18	90	4	82	64	5	10	19	1.43
45509326--45509407	32	2.6	32	94	0	146	54	6	6	32	1.49
45515991--45516033	23	1.9	22	90	4	68	46	0	0	53	1.00
45522501--45522542	7	6.0	7	100	0	84	14	28	28	28	1.95
45536505--45536570	29	2.2	30	83	5	89	21	27	10	40	1.86
45536518--45536659	29	4.9	29	70	8	128	25	25	11	37	1.90
45536518--45536681	86	1.9	87	91	1	267	25	25	12	37	1.90
45538508--45538562	25	2.2	25	80	0	65	29	18	20	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240