genome.fa.s24.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Length:  73211361

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   

This is table  158  of  240  ( 28759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49826909--49827166	129	2.0	129	98	0	498	23	18	16	41	1.89
49839156--49839391	85	2.8	84	86	3	312	35	25	16	22	1.95
49839164--49839390	42	5.4	42	76	12	187	36	25	15	22	1.94
49843268--49843550	154	1.8	156	90	6	459	41	4	11	42	1.61
49844859--49844965	53	2.0	53	100	0	214	28	7	13	51	1.67
49846697--49846747	25	2.0	25	85	7	68	43	1	3	50	1.31
49846705--49846763	29	2.0	31	90	6	95	44	3	1	50	1.28
49846712--49846772	29	2.0	31	84	12	83	45	3	3	47	1.35
49846732--49846847	61	1.9	58	84	8	153	43	4	4	48	1.42
49848193--49848238	22	2.1	22	88	8	67	56	10	8	23	1.61
49856217--49856255	20	2.0	20	94	0	69	48	0	2	48	1.15
49856354--49856393	20	2.0	20	90	0	62	50	7	10	32	1.64
49857179--49857458	124	2.3	124	87	4	395	31	16	21	31	1.95
49860167--49860388	41	5.4	41	90	0	336	27	20	27	23	1.99
49861977--49862104	35	4.0	34	78	19	134	33	0	21	44	1.53
49861977--49862114	29	4.6	29	83	14	172	34	0	20	44	1.57
49862284--49862333	21	2.4	21	79	0	55	2	24	30	44	1.65
49863278--49863302	7	3.6	7	100	0	50	60	12	0	28	1.32
49864391--49864449	29	2.0	29	90	6	93	57	1	0	40	1.09
49864483--49864533	22	2.3	21	83	9	66	33	0	33	33	1.58
49864486--49864585	52	1.9	52	91	0	164	38	0	32	30	1.58
49864538--49864593	22	2.5	22	97	2	103	41	0	30	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49864754--49866124	714	1.9	709	95	1	2483	24	25	19	30	1.98
49873876--49873905	13	2.3	13	94	0	51	90	0	10	0	0.47
49873875--49873909	18	2.1	16	89	10	52	88	0	11	0	0.51
49879749--49879793	15	2.9	16	90	6	74	84	0	15	0	0.62
49882297--49882361	3	21.7	3	100	0	130	67	0	32	0	0.91
49889209--49889275	34	2.0	34	90	0	107	20	22	8	47	1.78
49891399--49891437	19	2.1	19	95	0	69	33	10	7	48	1.66
49896283--49896315	6	5.5	6	100	0	66	84	0	15	0	0.61
49897665--49897973	124	2.4	126	83	4	365	30	15	22	30	1.95
49897970--49898474	22	23.1	21	78	11	466	24	0	31	43	1.59
49897968--49898410	43	10.0	50	74	18	216	24	0	31	43	1.61
49898024--49898474	65	7.0	64	82	5	478	24	0	31	43	1.58
49898025--49898412	43	9.0	43	84	7	470	24	0	31	43	1.58
49898422--49898455	15	2.2	16	94	5	61	14	0	35	50	1.44
49898429--49898467	15	2.6	15	88	8	53	17	0	33	48	1.48
49897970--49898418	22	20.5	22	82	9	501	25	0	30	43	1.59
49898440--49898483	22	2.0	21	83	12	54	25	2	31	40	1.68
49899015--49899057	18	2.4	18	84	0	59	44	6	27	20	1.77
49899898--49899935	20	1.9	20	84	10	51	55	7	2	34	1.43
49900795--49900832	11	3.4	11	88	3	58	44	2	34	18	1.64
49915807--49915868	19	3.3	19	74	17	58	54	3	3	38	1.32
49915814--49915874	23	2.6	24	75	14	65	59	1	1	37	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49915841--49915887	24	2.0	24	83	8	60	55	0	2	42	1.12
49915905--49915982	40	2.0	40	89	0	120	39	5	2	52	1.37
49915968--49916033	28	2.3	28	80	10	80	54	3	1	40	1.25
49920375--49920456	4	20.8	4	70	9	53	24	8	0	67	1.19
49920395--49920452	12	4.5	12	77	14	62	25	6	0	67	1.16
49920396--49920471	27	2.8	29	82	15	99	26	7	0	65	1.19
49925488--49925520	14	2.3	15	89	5	50	27	15	33	24	1.95
49925614--49925645	16	1.9	17	93	6	57	81	0	15	3	0.82
49926532--49927134	44	13.6	44	69	14	244	31	19	21	28	1.97
49926536--49926709	89	2.0	88	84	1	231	31	19	21	27	1.97
49926609--49926995	212	1.8	213	88	0	596	31	18	20	29	1.96
49926967--49927186	44	4.6	48	76	10	202	30	20	21	26	1.98
49927056--49927472	209	2.0	209	100	0	834	34	19	23	23	1.97
49928032--49928075	18	2.4	17	82	14	52	0	22	6	70	1.11
49928935--49928995	16	3.9	15	76	14	52	26	8	0	65	1.20
49928947--49928995	12	3.7	13	78	13	55	26	6	0	67	1.14
49929080--49929178	47	2.1	47	100	0	198	32	6	10	51	1.60
49931263--49931300	18	2.1	18	95	0	67	47	18	10	23	1.79
49931284--49931330	24	2.0	24	82	0	58	46	17	10	25	1.79
49931877--49931937	31	2.0	31	90	0	95	19	37	26	16	1.93
49934874--49934902	6	4.8	6	100	0	58	51	17	13	17	1.76
49937246--49937297	15	3.6	15	69	10	54	25	38	13	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49938667--49938723	29	1.9	30	85	3	80	45	12	8	33	1.72
49946401--49946598	35	5.9	35	74	14	100	43	18	7	30	1.77
49946418--49946583	31	5.2	31	75	13	158	43	19	7	28	1.78
49946418--49946598	64	2.8	64	85	8	249	44	18	7	29	1.77
49946944--49947195	76	3.3	78	89	3	377	40	17	3	38	1.68
49950439--49950468	15	1.9	16	93	6	53	0	30	0	70	0.88
49951225--49951445	80	2.7	79	82	6	264	43	22	19	14	1.87
49951173--49951449	27	10.3	27	77	8	251	42	21	20	14	1.88
49951215--49951477	81	3.3	77	76	8	217	42	22	19	15	1.88
49951764--49951876	28	4.0	28	85	0	136	23	23	20	32	1.98
49958853--49959182	27	12.3	27	77	10	284	43	19	20	17	1.89
49958853--49959184	54	6.2	54	79	6	352	42	19	20	17	1.89
49959537--49959640	28	3.7	28	85	2	129	23	24	22	30	1.99
49963901--49964142	50	4.9	50	81	3	238	22	28	20	28	1.99
49967499--49967561	20	3.0	21	84	9	76	14	14	20	50	1.77
49976633--49976880	60	4.1	60	81	4	257	26	27	14	31	1.94
49977788--49977841	22	2.5	22	87	6	74	35	18	7	38	1.79
49981240--49981280	18	2.2	20	86	8	59	70	9	2	17	1.25
49981325--49981363	11	3.6	11	79	6	53	66	7	0	25	1.18
49985013--49985066	18	2.9	19	76	15	60	50	3	1	44	1.30
49995032--49995058	14	1.9	14	100	0	54	70	7	7	14	1.32
49999984--50000207	40	5.6	40	86	4	265	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50007874--50008040	40	4.2	40	89	2	221	25	28	21	23	1.99
50007874--50008093	40	5.6	39	84	4	219	25	28	21	24	1.99
50008025--50008102	40	1.9	41	82	10	97	26	28	21	23	1.99
50012090--50012136	18	2.7	18	83	3	60	48	10	8	31	1.68
50013062--50013145	42	2.0	43	85	2	116	32	17	15	34	1.92
50015265--50015402	40	3.5	40	85	0	168	13	20	28	37	1.91
50035998--50036028	9	3.3	9	95	4	53	58	0	0	41	0.98
50041374--50041418	21	2.1	20	84	12	54	37	0	6	55	1.26
50042595--50042625	14	2.1	15	94	5	55	54	0	0	45	0.99
50043310--50043507	106	1.9	106	84	7	267	45	14	11	28	1.79
50045038--50045090	22	2.4	22	100	0	106	7	30	0	62	1.23
50049781--50049855	31	2.7	26	74	18	69	30	14	8	46	1.73
50049793--50049856	31	2.1	31	96	0	119	28	15	7	48	1.73
50050522--50050594	22	3.3	22	70	0	65	47	8	5	38	1.56
50053352--50053389	3	12.7	3	88	0	58	28	0	36	34	1.58
50063100--50064028	88	10.6	87	85	2	1110	28	18	24	28	1.98
50063102--50063329	44	5.2	44	61	4	109	27	17	25	29	1.97
50063629--50063851	44	5.1	44	64	12	116	29	20	24	26	1.99
50064692--50064716	13	1.9	13	100	0	50	68	0	16	16	1.22
50065468--50065509	19	2.2	20	80	16	54	28	7	0	64	1.20
50071540--50071621	39	2.1	39	97	2	157	28	4	37	29	1.78
50071552--50071615	21	3.2	21	65	13	62	26	4	37	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50075739--50075799	29	2.0	30	81	12	72	36	6	6	50	1.54
50077240--50077332	47	1.9	49	84	6	127	33	25	23	17	1.96
50078759--50078822	17	4.0	17	74	13	64	18	3	6	71	1.20
50078760--50078813	27	2.0	26	82	10	65	18	1	5	74	1.11
50080502--50080545	22	2.0	21	82	4	52	38	11	9	40	1.73
50081422--50081490	24	2.9	24	73	16	70	31	15	10	42	1.81
50081422--50081563	48	3.0	48	78	1	142	27	16	14	41	1.87
50081437--50081540	24	4.3	23	68	15	61	27	17	13	41	1.87
50082995--50083070	21	3.6	21	72	13	75	14	26	30	28	1.95
50089311--50089343	6	5.5	6	92	0	57	57	0	27	15	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240